1023 Commits

Author SHA1 Message Date
jhendersonHDF
1bcef50b86
Print some messages in parallel tests on MPI rank 0 only (#3785)
Avoids overly verbose output from all processes emitting progress, etc. info.
2023-10-27 21:18:24 -07:00
Scot Breitenfeld
1d8513f034
Add compression tests for subfiling (#3769) 2023-10-25 13:49:30 -05:00
vchoi-hdfgroup
6578c452b5
Preserve MPI-I/O file hints when fapl is closed (#3755)
* Fix for issue #3025: Save the MPI info in the file struct so H5Fget_access_plist() can retrieve it from there.
2023-10-24 21:48:28 -05:00
Glenn Song
ea1714b303
Fix H5Pset_evict_on_close failing regardless of actual parallel use (#3761)
Allow H5Pset_evict_on_close to be called regardless of whether a parallel build of HDF5 is being used

Fail during file opens if H5Pset_evict_on_close has been set to true on the given File Access Property List and the size of the MPI communicator being used is greater than 1
2023-10-24 12:51:55 -05:00
Neil Fortner
1900cc63eb
Fix failure in t_select_io_dset when run with more than 10 ranks (#3758) 2023-10-23 19:08:48 -07:00
jhendersonHDF
af49eb5b86
Fix hangs during collective I/O with independent metadata writes (#3693) 2023-10-23 19:06:44 -07:00
Dana Robinson
e4fb67c84a
Clean Autotools files in parallel tests (#3744)
Adds missing files to `make clean` for parallel, including Fortran.
2023-10-22 18:45:22 -07:00
Neil Fortner
630d6e27c9
Add new API function H5Pget_actual_select_io_mode() (#2974)
This function allows the user to determine if the library performed selection I/O, vector I/O, or scalar (legacy) I/O during the last HDF5 operation performed with the provided DXPL. Expanded existing tests to check this functionality.
2023-10-20 10:32:17 -07:00
jhendersonHDF
af56339d3b
Fixes and adjustments to t_filters_parallel (#3714)
Broadcast number of datasets to create in multi-dataset I/O cases
so that interference with random number generation doesn't cause
mismatches between ranks

Set fill time for datasets to "never" by default and adjust on a
per-test basis to avoid writing fill values to chunks when it's
unnecessary

Reduce number of loops run in some tests when performing multi-dataset
I/O

Fix an issue in the "fill time never" test where data verification
could fill if file space reuse causes application buffers to be
filled with chosen fill value when reading from datasets with
uninitialized storage

Skip multi-chunk I/O test configurations for multi-dataset I/O
configurations when the TestExpress level is > 1 since those
tests can be more stressful on the file system

Disable use of persistent file free space management for now
since it occasionally runs into an infinite loop in the library's
free space management code
2023-10-19 15:23:59 -07:00
Dana Robinson
e2d40ef16e
Suppress format string warnings in subfiling test (#3699) 2023-10-17 11:05:20 -07:00
jhendersonHDF
45c4729799
Add test info output to t_filters_parallel (#3696) 2023-10-17 10:40:42 -07:00
Dana Robinson
ccb1a917b6
Fix printf warnings in t_mpi (#3679)
* Fix printf warnings in t_mpi

The type of MPI_Offset varies with implementation. In MPICH, it's long,
which raises warnings when we attempt to use long long format
specifiers. Casting to long long fixes the warnings.
2023-10-16 12:19:15 -05:00
Dana Robinson
ef1edba2ce
Fix uninitialized subfiling test variable (#3675)
Picked up by gcc 10 on skybridge. Probably spurious, but no harm in
initializing it to a "bad" value.
2023-10-14 22:34:29 -05:00
jhendersonHDF
3ec119b558
Add expedited testing support to t_filters_parallel (#3665) 2023-10-12 16:12:57 -05:00
H. Joe Lee
72f94bc1f5
Simplify. (#3659)
* Address @jhendersonHDF review
2023-10-12 11:37:56 -05:00
jhendersonHDF
bfbfaf72e1
Update parallel compression feature to support multi-dataset I/O (#3591) 2023-10-10 10:11:22 -05:00
jhendersonHDF
34fcb9c5a4
Fix several spelling/grammar issues (#3621) 2023-10-03 09:01:28 -07:00
H. Joe Lee
e7360391fd
Fix typos (#3609) 2023-09-27 10:39:17 -07:00
H. Joe Lee
4233ae69c0
Remove sh to run bash script. (#3590) 2023-09-26 14:52:31 -07:00
Scot Breitenfeld
a87ca572fe
Replaces HDgetenv with getenv (#3599) 2023-09-26 13:11:22 -07:00
H. Joe Lee
f994aa5956
Fix typos and grammar in t_pread. (#3565) 2023-09-22 08:44:53 -05:00
H. Joe Lee
16ac8f74d4
Check return values from HDF5 API calls. (#3556) 2023-09-22 08:40:56 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Dana Robinson
3479b51dc1
Remove HD prefix from HDlog10 calls (#3539)
Was missed in a previous commit and causes building subfiling to
fail.
2023-09-15 09:36:14 -05:00
Scot Breitenfeld
157dda4887
quiet warning on sunspot (gcc 11.2.0) (#3534) 2023-09-13 07:34:07 -05:00
Scot Breitenfeld
117d579c32
Consistent initialization of hid_t in the tests (#3521) 2023-09-08 18:06:23 -05:00
Dana Robinson
d24f5d5223
Convert hbool_t --> bool in testpar (#3495) 2023-09-05 11:49:37 -07:00
Scot Breitenfeld
896270cc6b
Removed all the ranks printing out testing information (#3457) 2023-08-31 21:34:57 -07:00
H. Joe Lee
df161ac293
chore: match function call and VRFY() output (#3428) 2023-08-25 08:13:32 -05:00
jhendersonHDF
b80eaf8631
Fix use of uninitialized value in testpar/t_dset.c test (#3423) 2023-08-24 12:30:06 -05:00
jhendersonHDF
216d2191c7
Skip atomicity tests for OpenMPI major versions < 5 (#3421) 2023-08-24 08:54:13 -07:00
H. Joe Lee
f346c74dc0
chore: remove gubbins comment (#3420) 2023-08-24 08:10:27 -05:00
H. Joe Lee
221e727ee2
chore: fix typo (#3405) 2023-08-21 22:09:51 -05:00
jhendersonHDF
5df18802d0
Fix serial to parallel chunked dataset file space allocation bug (#3394) 2023-08-21 22:09:04 -05:00
jhendersonHDF
98b8fa7469
Fix assertion failure during file close on error (#3387) 2023-08-18 15:59:25 -05:00
jhendersonHDF
14eb8f87f4
Work around a testphdf5 failure on Cray MPICH machines (#3361) 2023-08-08 13:02:19 -05:00
vchoi-hdfgroup
291b2f7ae4
Implementation of the mpio driver with selection I/O. (#3222)
* This changes the default selection I/O to on for MPIO.
2023-08-06 22:12:07 -05:00
H. Joe Lee
fb38a8b924
test(parallel): verify FALSE case (#3356) 2023-08-04 22:59:52 -05:00
Sean McBride
07df0d252c
Fixes the last of the -Wextra-semi-stmt warnings (#3326)
* Fixed extra semi warning by adjusting alternative macro definitions

* Find-replace H5E_END_TRY; -> H5E_END_TRY

* Made H5Epush_goto a do-while loop, fixed indentation

* Made GOTOERROR and ERRMSG do-while loops

* Made Hgoto_error and Hgoto_done  do-while loops

* Made vrfy_cint_type and vrfy_ctype  do-while loops

* Made TEST_TYPE_CONTIG and others do-while loops

* Removed extraneous semi-colons

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-08-02 17:46:26 -05:00
H. Joe Lee
85d216634a
chore: fix typo - persent -> present (#3273) 2023-07-25 10:47:08 -07:00
H. Joe Lee
e0083c48e9
chore: fix grammar - get hang -> get hung (#3272) 2023-07-24 14:44:02 -05:00
H. Joe Lee
fe7e027db6
chore: make VRFY output consistent (#3268) 2023-07-24 12:02:10 -05:00
Sean McBride
b68988d2d2
Fixed some -Wunused-variable warnings and one Wsometimes-uninitialized warning (#3260) 2023-07-20 07:57:54 -05:00
jhendersonHDF
aab497a631
Fix some warnings in developer builds (#3247)
* Fix some warnings in developer builds

* Switch approach to Winline flag
2023-07-18 04:27:07 -07:00
Larry Knox
145e962bce
Replace support.hdfgroup.org URLs for alternative COPYING file (#3228)
* Replace support.hdfgroup.org URLs for alternative COPYING file
locations in copyright headers with https://www.hdfgroup.org/licenses.
Replace  support.hdfgroup.org URL for alternative COPYING_LBNL_HDF5
with github URL.
Tweak chkcopyright script for change from UICOPYRIGHTSTR to
THGCOPYRIGHTSTR.
2023-07-12 17:33:58 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
fd56a593b7
Remove HD from C std lib file ops (#3206)
* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite
2023-06-29 08:19:31 -07:00
Dana Robinson
8aef67f0ae
Remove HD from strto* calls (#3204)
* HDstrtod
* HDstrtol
* HDstrtoll
* HDstrtoul
* HDstrtoull
* HDstrtoumax
2023-06-29 08:18:49 -07:00
Dana Robinson
9f430d15b0
Rename HDexit() and related to exit(), etc. (#3202)
* HDatexit
* HDexit
* HD_exit
2023-06-29 08:18:01 -07:00