Commit Graph

18764 Commits

Author SHA1 Message Date
Quincey Koziol
e395d1ed7c Correct Windows build. 2018-12-05 13:33:08 -06:00
Quincey Koziol
14f463593b Merge pull request #1347 in HDFFV/hdf5 from stackable_vol to develop
* commit 'c58d84e721ef9fbda63abc834767a28dc978d121': (50 commits)
  Refactor allocating & releasing pass through wrapper objects.
  Fix typo
  Remove duplicated comment.
  Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector.
  Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value.
  Correct "make check-vol" regression test target.
  Switch H5VL_class_value_t from enum to unsigned integer
  Add support for "make check-vol", along with a few minor cleanups, etc.
  Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors.   Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
  Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory.
  Add pass-through VOL connector
  Update API tracing info for VOL functions and regenerate trace macros for VOL API calls.
  Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
  Add using FAPL from h5_fileaccess() to more tests.
  Remove unused test for unimplemented routine.
  Switch loc_params to VOL callbacks to pass struct by pointer instead of by value.
  Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object.
  Revert some of the changes to support the original property list value of metadata read attempts.
  Add VOL connector info to the flie access property list returned from H5Fget_access_plist().  Also, other misc. cleanups, etc.
  Switch tool error output to match VOL changes within library
  ...
2018-12-05 13:03:59 -06:00
Scot Breitenfeld
2f605eaa99 Merge pull request #1351 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit '988eed8cf776c14d3e0ddac9fecc372c74e5484c':
  updated with HDFFV-10511
2018-12-05 09:03:08 -06:00
Scot Breitenfeld
988eed8cf7 updated with HDFFV-10511 2018-12-04 12:25:30 -06:00
Quincey Koziol
c58d84e721 Refactor allocating & releasing pass through wrapper objects. 2018-12-03 13:11:17 -06:00
Quincey Koziol
81d67d5fdc Fix typo 2018-11-30 15:00:38 -06:00
Quincey Koziol
50c4095c8c Remove duplicated comment. 2018-11-30 14:18:14 -06:00
Quincey Koziol
047269139f Add a couple of missing prototypes for static routines, along with updating
a comment from VOL plugin -> connector.
2018-11-30 14:12:32 -06:00
Quincey Koziol
beb7428f68 Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value. 2018-11-29 08:26:25 -06:00
Quincey Koziol
8c606f586e Correct "make check-vol" regression test target. 2018-11-28 22:54:46 -06:00
Quincey Koziol
f3ad03a538 Switch H5VL_class_value_t from enum to unsigned integer 2018-11-28 22:21:45 -06:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
Quincey Koziol
6eabeabdaa Refactor infrastructure for setting FAPL information from environment
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors.   Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
2018-11-28 17:38:03 -06:00
Quincey Koziol
3abf58dce0 Remove example VOL connector, since it's been superceded by the pass-through
VOL connector in the src subdirectory.
2018-11-28 10:38:52 -06:00
Quincey Koziol
238a207f2d Add pass-through VOL connector 2018-11-28 10:26:03 -06:00
Quincey Koziol
2db4b6df13 Update API tracing info for VOL functions and regenerate trace macros for VOL
API calls.
2018-11-28 10:22:29 -06:00
Quincey Koziol
bf79e1bd76 Added 'notify' callback for async requests; switched VOL class and info
comparison to return comparison value as parameter, so they can return error
values; "cancelled" -> "canceled"; switched order of 'wrap_object' and
'free_wrap_ctx' management callbacks.
2018-11-27 22:15:34 -06:00
Quincey Koziol
3c5706ff5b Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-27 18:51:57 -06:00
Dana Robinson
86c4e7ac0f Merge pull request #1345 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop
* commit '6fccabed2e8b522747ee8056a196273917af78c7':
  Missed some function renames in error text.
2018-11-27 15:05:03 -06:00
Ray Lu
041a8295ff Merge pull request #1344 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10607-patches-for-warnings-in-the-core to develop
* commit '14de476c8cb1b797ad43bea3c71dfb32bcd2131c':
  HDFFV-10607 Fixing two compiler warnings in the library.
2018-11-27 14:59:43 -06:00
Dana Robinson
6fccabed2e Missed some function renames in error text. 2018-11-27 11:50:35 -08:00
Dana Robinson
3db8d69424 Merge pull request #1343 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop
* commit '8cf3bfb14bd2a80f13d269a9e84cd99f86f19254':
  Yanked all MPI-1 calls
  Updated H5S to use the MPI-2 function MPI_Type_get_exten() where available. OpenMPI 4.0 removed the deprecated MPI-1 MPI_type_extent() call by default, so this avoids needing a special OpenMPI build.
2018-11-27 13:08:54 -06:00
Dana Robinson
8cf3bfb14b Yanked all MPI-1 calls 2018-11-27 10:31:54 -08:00
Dana Robinson
bd820f7861 Merge branch 'develop' into openmpi_tweaks 2018-11-27 09:39:23 -08:00
Dana Robinson
b087f675e2 Merge pull request #1341 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'd517bdf9d36f423e7abad34e109b6ce694fd03c8':
  Pulled the RELEASE.txt note concerning HDFFV-10633 since that change was pushed to hdf5_1_10 in case we release the Windows VFD in 1.10.5.
2018-11-27 11:38:29 -06:00
Songyu Lu
14de476c8c HDFFV-10607 Fixing two compiler warnings in the library. 2018-11-27 09:04:42 -06:00
Dana Robinson
38c202df4d Updated H5S to use the MPI-2 function MPI_Type_get_exten()
where available. OpenMPI 4.0 removed the deprecated MPI-1
MPI_type_extent() call by default, so this avoids needing
a special OpenMPI build.
2018-11-26 22:10:06 -08:00
Dana Robinson
d517bdf9d3 Pulled the RELEASE.txt note concerning HDFFV-10633 since that
change was pushed to hdf5_1_10 in case we release the Windows VFD
in 1.10.5.
2018-11-24 11:56:28 -08:00
Quincey Koziol
3217ffa1ac Add using FAPL from h5_fileaccess() to more tests. 2018-11-22 01:21:50 -06:00
Quincey Koziol
340b7a4fb8 Remove unused test for unimplemented routine. 2018-11-22 01:08:47 -06:00
Quincey Koziol
f9b625ef5d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-21 23:13:04 -06:00
Quincey Koziol
3055e499d5 Switch loc_params to VOL callbacks to pass struct by pointer instead of by
value.
2018-11-21 23:12:24 -06:00
Larry Knox
9c7161e105 Merge pull request #1334 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '7bf6e98bd921c4ef1899144ab8a1f0d66a141141':
  Move wait_H5init.cmake up to config/cmake.
  Changes to CMake code to pause cmake/ctest, waiting for batch jobs to run and finish.
  Really don't run parallel tests without option specifying script.
  Add script and changes to wait for H5Tinit.c Add more sample batch scripts, specifically for sbatch, not for knl cross compile. Don't run parallel tests when no parallel test script is configured in HDF5options.cmake.
2018-11-21 09:55:08 -06:00
Quincey Koziol
8939a2190f Add info_to_str and str_to_info "management" callbacks for serializing and
deserializing a connector's info object.
2018-11-21 00:56:13 -06:00
Larry Knox
7bf6e98bd9 Move wait_H5init.cmake up to config/cmake. 2018-11-20 12:09:14 -06:00
Larry Knox
8544aae3e8 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-11-20 11:58:27 -06:00
Larry Knox
720bbdfe61 Changes to CMake code to pause cmake/ctest, waiting for batch jobs to
run and finish.
2018-11-20 11:03:58 -06:00
Larry Knox
5a90dd3cae Merge pull request #1338 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '3dc4055aaf2c0917569cba38d47df051cc0eeb79':
  Fix typo
  Standardize script
  add max count to options file
  Check PARALLEL_LEVEL maximum
2018-11-20 06:54:11 -06:00
Quincey Koziol
23ff0240ae Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-19 21:09:28 -06:00
Ray Lu
160107a97c Merge pull request #1335 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10571-cve-2018-17237-divided-by-zero to develop
* commit 'c923cdad6e515c842f3795a5b6d754ad94021e09':
  HDFFV-10571: Minor format changes.
  HDFFV-10571: Minor change - reformatting the error check.
  HDFFV-10571: Minor change - adding the error check right after decoding of chunk dimension for safeguard.
  HDFFV-10571: Minor change - revised the comment to be clearer.
  HDFFV-10571 Divided by Zero vulnerability.  Minor fix: I added an error check to make sure the chunk size is not zero.
2018-11-19 17:20:06 -06:00
Allen Byrne
3dc4055aaf Fix typo 2018-11-19 11:41:11 -06:00
Allen Byrne
4bc283a0f2 Standardize script 2018-11-19 11:03:42 -06:00
Allen Byrne
d9fbacff90 add max count to options file 2018-11-19 11:02:20 -06:00
Allen Byrne
a26aedce04 Check PARALLEL_LEVEL maximum 2018-11-19 10:03:18 -06:00
Quincey Koziol
6c99961bb2 Revert some of the changes to support the original property list value of
metadata read attempts.
2018-11-18 00:57:09 -06:00
Quincey Koziol
d0d360ff2d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-18 00:39:27 -06:00
Quincey Koziol
59c28780d3 Add VOL connector info to the flie access property list returned from
H5Fget_access_plist().  Also, other misc. cleanups, etc.
2018-11-18 00:38:29 -06:00
Ray Lu
e9125d6a99 Merge pull request #1337 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash2 to develop
* commit '4f5a52e595194562644517b7600f3b96d4008c17':
  HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST.
  HDFFV-10601: Some compiler doesn't support clock_gettime().  So I changed to use gettimeofday (HDgettimeofday in the HDF5 library).
2018-11-17 19:03:30 -06:00
Songyu Lu
4f5a52e595 HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST. 2018-11-16 16:25:50 -06:00
Songyu Lu
d25afb294c HDFFV-10601: Some compiler doesn't support clock_gettime(). So I changed to use gettimeofday (HDgettimeofday in the HDF5 library). 2018-11-16 12:06:30 -06:00