Commit Graph

1194 Commits

Author SHA1 Message Date
Dana Robinson
e21c1cf7c6 Removed H5I_REFERENCE from the library. It has always been unused
and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
2018-12-08 08:14:05 -08:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
hdftest
e2f6e6f62f Snapshot version 1.11 release 2. 2018-09-20 14:54:10 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Larry Knox
d20fd310e4 Change prefix in example scripts to relative path to bin. This was done
for 1.8, and works wherever installed without the need to replace the
original prefix.
2018-08-23 07:37:00 -05:00
Binh-Minh Ribler
7d9f5ed49a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop 2018-07-28 08:05:16 -05:00
Binh-Minh Ribler
4578eb0fc1 Fixed document format
Platforms tested:
    Linux/64 (jelly) (only in comment sections)
2018-07-28 08:00:32 -05:00
Binh-Minh Ribler
f5551a9602 Fixed missing backslash 2018-07-24 08:39:16 -05:00
Larry Knox
9838a1a08f Add missing '\' in the middle of the public headers list in Makefile.am. 2018-07-24 08:36:37 -05:00
Binh-Minh Ribler
3c6a39858f Fixed typos 2018-07-23 11:18:43 -05:00
Binh-Minh Ribler
09913e2f8e Added class DSetAccPropList
Description:
    - Added class DSetAccPropList for the dataset access property list.
    - Added wrapper for H5Dget_access_plist to class DataSet
        // Gets the access property list of this dataset.
        DSetAccPropList getAccessPlist() const;

    - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class
      DSetAccPropList
        // Sets the raw data chunk cache parameters.
        void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)

        // Retrieves the raw data chunk cache parameters.
        void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)

    - Added two more arguments to H5Location::createDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
        const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT

    - Added one more argument to H5Location::openDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT

Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-22 15:22:34 -05:00
Binh-Minh Ribler
4f37cdcd36 Code improvement
Description:
    Moved the new H5Object::getInfo member functions to H5Location and
    made them overloaded with the existing H5Location::getObjinfo.  This
    way is cleaner than the previous approach.
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-21 00:40:57 -05:00
Binh-Minh Ribler
dd0a040ec8 Fixed EED-319
Description:
    - Fixed doc issue
      Added an html version for the C++ function mapping table and removed
      the single web page version.
      Updated cpp_doc_config to use the html file.
    - Added a couple more minor tests
2018-07-18 10:36:05 -05:00
Binh-Minh Ribler
a31cd3623f Fixed HDFFV-10472
Description:
    Added operator!= to DataType
        bool operator!=(const DataType& compared_type)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 12:21:07 -05:00
Binh-Minh Ribler
3aa2443518 Fixed HDFFV-10458 partially
Description:
    Added wrappers for H5Oget_info_by_idx2.

    // Returns information about an HDF5 object, given its index.
    void getInfo(const char* grp_name, H5_index_t idx_type,
                 H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
    void getInfo(const H5std_string& grp_name, H5_index_t idx_type,
                 H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 09:12:10 -05:00
Binh-Minh Ribler
944735221e Fixed comments 2018-07-17 01:32:07 -05:00
Binh-Minh Ribler
14bf28780a Fixed HDFFV-10458 partially
Description:
    Added wrappers for H5Oget_info2 and H5Oget_info_by_name2.

    // Returns information about an HDF5 object.
    void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC)

    // Returns information about an HDF5 object, given its name.
    void getInfo(const char* name, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
    void getInfo(const H5std_string& name, H5O_info_t& objinfo,
                 unsigned fields = H5O_INFO_BASIC,
                 const LinkAccPropList& lapl = LinkAccPropList::DEFAULT)
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-17 01:09:45 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
M. Scot Breitenfeld
4ddd7704b6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-22 11:48:44 -05:00
Allen Byrne
e96ef71034 HDFFV-9739 and cmake improvements merge from develop 2018-05-22 10:23:16 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
M. Scot Breitenfeld
88e0c3e748 Merge branch 'develop' into hdf5_1_10.sync 2018-05-10 09:06:35 -05:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
f1a668a3b5 Correct COMPILE defs usage 2018-05-09 08:53:25 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
hdftest
0c91e6b922 Updated version to 1.10.3-snap1 2018-04-30 08:16:49 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
df83d78134 HDFFV-10444 fix so numbers and merge java test changes 2018-04-10 10:52:18 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Larry Knox
f398e77707 Merge pull request #965 in HDFFV/hdf5 from develop to hdf5_1_10
* commit '02a9433fa0aac34ae81ab5f0d5b97a7934881215':
  Add 2 parallel test files to CHECK-CLEANFILES so that if their tests fail before removing them, make check-clean will remove them.
  Fixed memory leak Description:     Added LinkCreatPropList to initH5cpp to cleaning up resource at exit. Platforms tested:     Linux/64 (jelly)     Linux/ppc64 (ostrich)
  HDFFV-10412 add note for new H5error_on Java API
2018-03-15 13:08:00 -05:00
Binh-Minh Ribler
8f5be458f4 Fixed memory leak
Description:
    Added LinkCreatPropList to initH5cpp to cleaning up resource at exit.
Platforms tested:
    Linux/64 (jelly)
    Linux/ppc64 (ostrich)
2018-03-15 09:06:16 -05:00
lrknox
aa199c893f Updated version to 1.10.3-snap0 2018-03-14 16:19:26 -05:00
Larry Knox
f30873136b Merge pull request #943 in HDFFV/hdf5 from develop to hdf5_1_10
* commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e':
  Rework new tests into one macro
  Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
  Fix CMake test names
  Fixed typo
  Add release note for HDFFFV-10397.
  Added a fix for HDFFV-10358.
  Fixed documentation Description:     - Updated the description of copy constructor for clarification.     - Removed unnecessary comments. Platforms tested:     Linux/64 (jelly)
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-13 13:04:03 -05:00
Binh-Minh Ribler
c76411768f Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp3 into develop 2018-03-12 20:06:20 -05:00
Binh-Minh Ribler
2d4d39d157 Fixed documentation
Description:
    - Updated the description of copy constructor for clarification.
    - Removed unnecessary comments.
Platforms tested:
    Linux/64 (jelly)
2018-03-12 19:39:20 -05:00
M. Scot Breitenfeld
48eaac2029 Merge branch 'develop' into hdf5_1_10_merge 2018-03-12 12:07:51 -05:00