mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-12-03 02:32:04 +08:00
Code Issues Packages Projects Releases Wiki Activity
14,155 Commits 87 Branches 144 Tags 734 MiB
e2175fd0ca
Commit Graph

332 Commits

Author SHA1 Message Date
Elena Pourmal
e2175fd0ca [svn-r26360] Modified CMake files to accomodate new h5_vds-exc.c example. 2015-03-04 12:29:29 -05:00
Elena Pourmal
3c9c263e5a [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure. 
Tested on jam.
 2015-03-04 12:26:33 -05:00
Elena Pourmal
026cf21de8 [svn-r26357] Added mapping example for the Excalibur detector use case. 2015-03-04 12:03:32 -05:00
Elena Pourmal
56f7406671 [svn-r26343] Improved output. 2015-03-02 16:34:39 -05:00
Elena Pourmal
a726992cd8 [svn-r26342] Added usage of the new H5S*_regular_hyperslab functions. 
Tested on jam.
 2015-03-02 16:32:27 -05:00
Neil Fortner
952d00e7f0 [svn-r26306] Merge r26296 through 26304 from trunk to vds branch. 
It should no longer be necessary to use --enable-using-memchecker
make check fails due to an issue with h5ls apparently unrelated to the merge

Tested: ummon
 2015-02-25 17:06:18 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Elena Pourmal
99a3f4d8d4 [svn-r26297] Changed example and h5dump according to suggestions at today's code review VDS-176. 
BNF has been updated too. Now h5dump displays VDS like this:

HDF5 "vds.h5" {
GROUP "/" {
   DATASET "VDS" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
      STORAGE_LAYOUT {
         VIRTUAL {
             HYPERSLAB { (0,0)-(0,5) };
             a.h5;
             A;
             ALL;
             HYPERSLAB { (1,0)-(1,5) };
             b.h5;
             B;
             ALL;
             HYPERSLAB { (2,0)-(2,5) };
             c.h5;
             C;
             ALL;
            }
         }
      }
      FILTERS {
.......
I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow.

Tested on jam
 2015-02-24 23:19:41 -05:00
Neil Fortner
2ca5b16a9f [svn-r26296] Merge r26050 through 26295 from trunk to vds branch. 
Tested: ummon
 2015-02-24 16:53:56 -05:00
Elena Pourmal
7556f179c3 [svn-r26269] Minor cleanup in the comments. 2015-02-21 22:38:00 -05:00
Elena Pourmal
7881deb15e [svn-r26268] Added VDS example. 
I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am,
but didn't run reconfigure?

Tested on jam.
 2015-02-21 22:26:08 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk: 
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
 2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch: 
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
 2015-02-16 11:17:03 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description: 
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
 2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big 
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
 2014-07-07 13:22:48 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder 
Tested: local linux
 2014-05-14 14:50:28 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l 
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
 2014-04-25 16:59:53 -05:00
Dana Robinson
7309bb5ab8 [svn-r25113] Fixed Subversion EOL and executable attributes. No code changes. 2014-04-25 16:27:37 -05:00
Larry Knox
f32690b53c [svn-r24997] Added compiler versions for mpich to settings file and configure summary. 
For make installcheck, compile and run installed examples using the installed scripts.  They were being compiled but not run.
Add Fortran2003 examples to the run-ex-fortran script when fortran2003 is enabled.
Set flag to -O3 in production mode for Intel compilers other than those with specified other settings.
Gentoo patches:
    Remove unnecessary setting of LD_LIBRARY_PATH from configure.
    Prevent potential array subscript out of bounds error in perform/pio_engine.c and sio_engine.c.

Tested with h5committest on jam, koala, ostrich and platypus, on emu and kite, and parallel tests on jam, koala and platypus with mpich built with gnu 4.8.2 and with intel compilers.
 2014-04-08 23:55:49 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1 
h5committest
 2014-03-31 12:07:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description: 
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
 2014-03-21 18:02:24 -05:00
Allen Byrne
da23edd24e [svn-r24851] example causes modal permission dialog to popup on windows. build but do not execute. 2014-03-20 16:18:30 -05:00
Allen Byrne
ba2c98d42a [svn-r24850] example causes modal permission dialog to popup on windows. Do not build. 2014-03-20 16:17:24 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 - 
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
 2014-03-18 11:21:46 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 - 
KitWare recommendations: Change CMake commands to lower case.
 2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 - 
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
 2014-03-11 16:14:57 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles. 
Tested: local cmake, autools, and h5committest
 2013-11-01 16:15:37 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. 
Tested with h5committest and on hdf-duck.
 2013-09-23 20:14:24 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers. 
Tested: local linux
 2013-08-19 16:49:44 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support 
This adds the UserMacros.cmake support needed.
 2013-06-10 12:46:48 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library. 
Tested: local linux, h5committest
 2013-02-18 15:56:21 -05:00
Allen Byrne
2fba171a67 [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10 2013-01-14 13:35:30 -05:00
Scot Breitenfeld
8dc9f39570 [svn-r23093] Fixed API to be 1.6 compliant, removed deprecated APIs 
Checked: jam (gnu, mpi) --disable-deprecated-symbols, --with-default-api-version=v16
 2012-12-12 09:56:39 -05:00
Scot Breitenfeld
7155aa6f1d [svn-r23091] Changed C examples to reflect changes in documentation via Barbara; 
mainly program additions from tutorial.

Tested: jam (gnu compilers)
 2012-12-11 23:00:34 -05:00
Larry Knox
33504deb83 [svn-r22908] Reverted changes in revision 22819 
Tested with h5committest on jam, koala and ostrich.
 2012-10-16 16:38:58 -05:00
Larry Knox
c5371d7618 [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. 
Tested on jam,koala,ostrich(h5committest) and other THG machines.
 2012-09-26 23:49:19 -05:00
Allen Byrne
eff696a3b0 [svn-r22785] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders 
Tested: jam with intel compilers
 2012-09-18 17:08:07 -05:00
Allen Byrne
5d88bae6df [svn-r22714] one more missed VAR change for parallel examples 2012-08-26 14:10:01 -05:00
Allen Byrne
1f8fb63581 [svn-r22709] HDFFV-8129: reconfigured on jam, Remove overloading of autotools TESTS var, rename configure.in to configure.ac, convert test scripts from hard *.sh to configure managed *sh.in files. 
Tested: h5committest
 2012-08-23 11:07:43 -05:00
Larry Knox
edf83e5d1f [svn-r22706] Updated autotools: autoconf 2.69, automake 1.12.3, m4 1.4.16, libtool 2.4.2 
Tested THG machines.
 2012-08-22 00:00:32 -05:00
Larry Knox
f4990be635 [svn-r22426] Add examples/README file to be installed with examples. 
Text file only, but tested with h5committest.
 2012-06-02 13:54:58 -05:00
Allen Byrne
eb5b8163f9 [svn-r22411] reduce compiler warnings by removing unreferenced variables and adding cast 
Tested: local linux
 2012-05-25 12:39:07 -05:00
Dana Robinson
f1df456412 [svn-r22170] Removed extraneous svn executable properties from non-executable files. 2012-03-28 14:30:59 -05:00
Allen Byrne
cc3eb8da73 [svn-r21804] Update CMake Required version in all folders to match current standard 2.8.6 2011-12-05 11:19:09 -05:00
Allen Byrne
c5e075851a [svn-r21667] Update FOLDER solution option for target properties. Added OPTION command for solution folder and no packaging. 
Tested: local linux
 2011-10-25 11:52:58 -05:00
Allen Byrne
2457d8ecaf [svn-r21366] JIRA HDFFV-2748 replace use of _WIN32 in source. Created new defines H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines to use. These can be properly set during configurration. 
Tested: windows and local linux - reviewed internally
 2011-09-06 11:50:32 -05:00
Scot Breitenfeld
9eb1d607d8 [svn-r21249] Description: Part II of F2003 branch merge into the trunk. 
Ran bin/reconfigure to update the Makefile.in in directories not part of the fortran directory check=in. Updates Makefile.in due to changes made in configure.in for the Fortran 2003 additions.

Tested on all platforms run under daily tests.
 2011-08-18 09:38:53 -05:00
Quincey Koziol
69d7f7312a [svn-r21119] Description: 
Simplify use of property lists to H5Rdereference, and switch to use
H5Rdereference2.

Tested on:
    Mac OS X/32 10.6.8 (amazon)
    (too small to require h5committest)
 2011-07-18 17:33:18 -05:00