3091 Commits

Author SHA1 Message Date
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Allen Byrne
882e59d1b3 Merge pull request #1157 in HDFFV/hdf5 from ~JHENDERSON/hdf5:bugfix/CMake_MPI_libs_fix to develop
* commit 'd075c0854d1ffb5a8eae23c5eb9a4456067f30c9':
  Add quotes to places where MPI_C_LIBRARIES are linked against
2018-07-30 11:45:55 -05:00
Jordan Henderson
d075c0854d Add quotes to places where MPI_C_LIBRARIES are linked against 2018-07-27 14:58:01 -05:00
Allen Byrne
14c060bbeb Add missing test option 2018-07-24 14:15:32 -05:00
Allen Byrne
b14c8bdb1c Add test file with unwritten datasets 2018-07-24 12:00:07 -05:00
Larry Knox
3c66549210 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2018-07-18 17:06:59 -05:00
Larry Knox
892252106a Apply Cygwin pathches from Marco Atzeri.
Commit Joe Lee's typo corrections for src/H5MF.c.
2018-07-18 17:01:53 -05:00
Vailin Choi
92bf81a0fb Changes based on feedback from pull request. 2018-07-12 18:25:49 -05:00
Vailin Choi
d1f8ac3312 Modifications made based on feedback from pull request. 2018-07-11 16:02:51 -05:00
Vailin Choi
cf38292064 Fix for HDFFV-10333:
1) Check for valid object header version for a refcount messge
2) Check for invalid fill value size
3) Check for invalid dimension size in a layout message
4) Add --enable-error-stack option to h5stat
5) Add error checks to h5stat.c
6) Add tests to h5stat and h5dump
2018-07-10 22:00:14 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing
changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
2018-06-24 18:04:23 -05:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
Dana Robinson
dec2f588ac Merge pull request #1043 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
  Updated commenting in the H5DO compat test.
  Stripped out most of the duplicated functionality in the H5DO compat test.
  * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
  * Fixed the error tests * Moved common functionality into helper functions
  Normalize with trunk prior to update merge
  Fixed a warning.
  Finished move of H5DOread/write_chunk calls to H5D.
  First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to   direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform   and renamed to direct_write_perf. * Updated autotools and CMake files.
2018-05-31 18:14:24 -05:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
M. Scot Breitenfeld
4ddd7704b6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-22 11:48:44 -05:00
Dana Robinson
0e584c7af2 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-05-14 17:45:23 -07:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
M. Scot Breitenfeld
88e0c3e748 Merge branch 'develop' into hdf5_1_10.sync 2018-05-10 09:06:35 -05:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
Allen Byrne
0344785872 Text cleanup 2018-05-08 15:51:39 -05:00
Dana Robinson
64e13ca220 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-04-30 15:22:09 -07:00
Allen Byrne
fde2d1fe4a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '1f8cb03e11a46f853881f45dac18eff2dd68401e':
  Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files.  (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
  Further minor cleanups
  Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
2018-04-30 11:05:26 -05:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
2018-04-30 07:52:07 -07:00
Quincey Koziol
83e2ea681d Fix errors in Makefile.am files that cause "make check" to repeat test, even
when there are no changes to source files.  (Also add a ggenerated script
to the list of files cleaned up on 'make distclean')
2018-04-28 21:38:49 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
df83d78134 HDFFV-10444 fix so numbers and merge java test changes 2018-04-10 10:52:18 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Quincey Koziol
1be6fd0ac1 Merge remote-tracking branch 'origin/develop' into merge_func_enter_vol 2018-03-28 21:36:51 -05:00
Allen Byrne
8bfa1b6fc5 Add missing test file 2018-03-28 08:17:36 -05:00
Allen Byrne
e1f937f14b Add missing test which is in autotools 2018-03-27 08:41:54 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
lrknox
aa199c893f Updated version to 1.10.3-snap0 2018-03-14 16:19:26 -05:00
Larry Knox
f30873136b Merge pull request #943 in HDFFV/hdf5 from develop to hdf5_1_10
* commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e':
  Rework new tests into one macro
  Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
  Fix CMake test names
  Fixed typo
  Add release note for HDFFFV-10397.
  Added a fix for HDFFV-10358.
  Fixed documentation Description:     - Updated the description of copy constructor for clarification.     - Removed unnecessary comments. Platforms tested:     Linux/64 (jelly)
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-13 13:04:03 -05:00
Allen Byrne
6287bac6e5 Rework new tests into one macro 2018-03-13 12:26:24 -05:00
Allen Byrne
cbe8171f67 Fix CMake test names 2018-03-13 10:26:49 -05:00
Vailin Choi
a8afb3ab3b Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1':
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-12 18:00:05 -05:00
M. Scot Breitenfeld
48eaac2029 Merge branch 'develop' into hdf5_1_10_merge 2018-03-12 12:07:51 -05:00
Vailin Choi
f08b8fa10e Enhancement to the tool h5clear (HDFFV-10360) 2018-03-12 09:02:15 -05:00
M. Scot Breitenfeld
a5d95ec083 Merge branch 'develop' into hdf5_1_10_merge 2018-03-09 16:57:54 -06:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
6d75a3ffb4 Fix misaligned macro 2018-03-07 15:55:33 -06:00
M. Scot Breitenfeld
496af1be89 Needs to sync with lib version and Sencode. 2018-03-07 15:49:14 -06:00
Allen Byrne
8347a31871 Fix CMake missing parens 2018-03-07 15:46:58 -06:00