Commit Graph

10953 Commits

Author SHA1 Message Date
Pedro Vicente Nunes
dfaf4dec8e [svn-r16405] #1449 Change set_extent test to use standard standalone test framework
use a fapl obtained by h5_fileaccess to the call of H5Fcreate
and redo the test calls with

h5_reset();
    fapl = h5_fileaccess();

    nerrors += do_ranks( fapl ) < 0 ? 1 : 0;
    nerrors += test_external( fapl ) < 0 ? 1 : 0;
    nerrors += do_layouts( fapl ) < 0 ? 1 : 0;

tested: windows, linux
2009-02-03 10:55:56 -05:00
Quincey Koziol
348c380e3f [svn-r16401] Description:
Correct error introduced in r16353 with layout version, and add test
so it gets caught earlier.

Tested on:
	FreeBSD/32 6.3 (duty)
	Too minor to require h5committest
2009-02-02 20:41:51 -05:00
Quincey Koziol
1528a6ad07 [svn-r16399] Description:
Remove some internal calls to H5E_clear_stack().

Tested on:
	FreeBSD/32 6.3 (duty)
	Too minor to require h5committest
2009-02-02 15:53:25 -05:00
HDF Tester
01d8f959f9 [svn-r16397] Snapshot version 1.9 release 29 2009-02-01 07:32:57 -05:00
Quincey Koziol
3b8b18d16e [svn-r16394] Description:
Rename H5O_msg_read_real -> H5O_msg_read_oh, to be more consistent with
other routines in library.

	Move H5O_msg_read_oh and H5O_msg_exists_oh from package to private
header file, so other routines in library can use them.

Tested on:
	FreeBSD/32 6.3 (duty)
	Too minor to require h5committest
2009-01-31 21:31:34 -05:00
Quincey Koziol
940f64156b [svn-r16391] Description:
Add more metadata statistics to extensible array header.

Tested on:
	FreeBSD 6.3 (duty)
	(too minor to require h5committest)
2009-01-31 13:12:20 -05:00
Raymond Lu
9146841b9e [svn-r16390] Brought check.com and make.com up to date. I'll test them on OpenVMS. 2009-01-31 11:25:22 -05:00
Raymond Lu
6361428300 [svn-r16389] Corrected a typo in the ZLIB path name.
Tested on OpenVMS.
2009-01-31 10:31:17 -05:00
Raymond Lu
63008bb5b3 [svn-r16388] Changed these files up to date. I'll test them after checkin. 2009-01-30 10:57:16 -05:00
Neil Fortner
e3cfd6f0df [svn-r16386] Fix various warnings (errors in pgcc) associated with yesterday's dense
attribute object copy commit.

Tested: jam (gcc and pgcc)
2009-01-30 10:46:43 -05:00
Quincey Koziol
2af7e952ed [svn-r16382] Description:
Re-insert some whitespace formatting that was accidentally removed.

Tested on:
	None - just eyeballed.
2009-01-29 16:08:13 -05:00
Neil Fortner
af7ced00f6 [svn-r16380] Purpose: Enable copying of dense attributes
Description:
Attribute object copy routines have been moved from H5Oattr.c to H5Aint.c.
These routines are now shared between compact and densely stored attributes.
New routines written to support the copying of dense attributes.  This patch wasmostly written by Peter Cao.

Tested: jam, smirom (h5committest)
2009-01-29 16:02:07 -05:00
Allen Byrne
f7464a5129 [svn-r16378] Description:
Changed max macro in earray.c to avoid Windows conflict.
    Changed if(test) to assert(test) in H5FDcore.c - H5FD_core_open()

Tested on:
    Windows: XP32, XP64, Vista32, Vista64 
    H5committest.
2009-01-29 15:52:44 -05:00
Neil Fortner
5a9903cdde [svn-r16377] Revert unintentional change to tfamily00000.h5 2009-01-29 15:51:25 -05:00
Neil Fortner
ec61416324 [svn-r16376] Purpose: Fix a bug encountered when copying shared messages
Description: When attempting to copy an object with a message shared in its own
object header, the library attempts to protect the same object header twice.
Previously, it was possible for the object header to be protected with write
access in one or both of these protects, which would be illegal.  The library
should now always protect with read only access in this case.  The conditions
for fixing incorrect datatype versions have been made weaker to support this
change.  The version will only be corrected if the object header the datatype
is in is modified.

Tested: jam, smirom (h5committest)
2009-01-29 15:43:16 -05:00
Pedro Vicente Nunes
9a298fd1dd [svn-r16373] replaced some printf statements with parallel_print
tested: linux serial and parallel
2009-01-29 13:58:36 -05:00
Quincey Koziol
6416329ef8 [svn-r16372] Description:
Clean up files produced from set_extent testing.

Tested on:
	FreeBSD/32 6.3 (duty)
	(too minor to require h5committest)
2009-01-29 13:18:39 -05:00
Neil Fortner
b698574fce [svn-r16370] Modify test_pack_ooo to always output the state of randomly generated variables
when it fails, even in the sections that do not use the random variables.

Tested: jam
2009-01-28 12:19:09 -05:00
Quincey Koziol
91c1a6df54 [svn-r16367] Description:
Refactor internal address encode/decode routines slightly, to allow for
more flexible use.

Tested on:
    Mac OS X/32 (amazon)
    FreeBSD/32 (duty)
    (too minor to require h5committest)
2009-01-27 18:09:35 -05:00
Quincey Koziol
05f1e4f778 [svn-r16366] Description:
Add context pointer for extensible array client callbacks.

Tested on:
    Mac OS X/32 (amazon)
    FreeBSD/32 (duty)
    (too minor to require full h5committest)
2009-01-27 17:43:58 -05:00
Quincey Koziol
c7407a8ccb [svn-r16364] Description:
Clean up a few compiler warnings

Tested on:
    Mac OS X/32 (amazon)
    (too minor to require h5committest)
2009-01-27 16:16:55 -05:00
Scot Breitenfeld
f640047612 [svn-r16362] Description:
*Fixed cd_nelements in nh5pget_filter_c - cd_nelments not pased in or returned correctly. Since 
        cd_nelmts has IN/OUT attributes, fixed the input and
        returned value of cd_nelmnts to satisfy this specification.

 *Fixed 'name' returned in nH5Pget_external_c - if the size of the fortran buffer is larger then 
        the returned string from the function then we need to give HD5packFstring the 
        fortran buffer size so that it fills the remaining unused characters with blanks. Found
        with the gfortran compiler.

Platforms tested: smirom, liberty
2009-01-27 15:48:01 -05:00
Neil Fortner
bf4789092a [svn-r16360] Purpose: Fix potential error with H5Tset_order
Description: H5Tset_order will now properly reject H5T_ORDER_NONE for most
datatypes.  Previously this could cause major problems as the file could not be
flushed.

Tested: jam, smirom (h5committest)
2009-01-27 10:56:48 -05:00
Pedro Vicente Nunes
a6dcbd6a0f [svn-r16358] bug fix
a new line was not inserted at the end of output, causing diff to complain between linux and frebsd

tested: linux , freebsd
2009-01-27 10:33:17 -05:00
Quincey Koziol
5cd054dd5c [svn-r16354] Description:
Bring r16353 back from revise_chunks branch:

        Refactor internal layout information, making it easier to add another
type of chunk index.

Tested on:
	FreeBSD/32 6.3 (duty)
	(other platforms tested with original patch)
2009-01-27 09:00:07 -05:00
Pedro Vicente Nunes
85a1c5c273 [svn-r16352] bug fix: some printf calls instead of parallel_print made some tests to fail
tested: linux parallel
2009-01-27 08:48:04 -05:00
Pedro Vicente Nunes
249163bee6 [svn-r16349] new h5diff output files 2009-01-26 14:38:43 -05:00
Pedro Vicente Nunes
120350c395 [svn-r16348] #1368 (E1) h5diff: implement "not comparable" messages. Implemented RFC. The new option is <-c, --compare List objects that are not comparable>
added some test cases

tested: windows, linux
2009-01-26 14:29:22 -05:00
Neil Fortner
0682bfceb7 [svn-r16347] Purpose: enhancements the H5Tinsert, H5Tpack
Description: H5Tinsert will now detect when a compound type that was previously
not packed becomes packed due to out of offset order insertion of a member.
H5Tinsert will now attempt to keep members sorted by offset order.  This should
improve performance of H5Tinsert in all cases due to the fact that it no longer
needs to check every other member for overlapping, and should improve
performance of H5Tpack and possibly type conversion when compounds are packed
out of order.

Tested: jam, smirom (h5committest)
2009-01-26 14:18:40 -05:00
HDF Tester
2a1a78a0b4 [svn-r16344] Snapshot version 1.9 release 28 2009-01-25 06:22:44 -05:00
Frank Baker
5393933154 [svn-r16340] Description:
Changed 'THG' to 'The HDF Group' in various HDF5 source files,
        most of which are <subdirectory>/COPYING.
    -- Closes Bugzilla entry 1403.
2009-01-22 15:53:59 -05:00
Mike McGreevy
a665dd22af [svn-r16338] Purpose:
Bug Fix

Description:

    Removing some unnecessary system headers from test/cache.c which snuck
    their way into one of my previous check-ins ... thanks to Allen for 
    catching this while testing on Windows.

Tested:

    Windows, Linux
2009-01-22 14:56:31 -05:00
Raymond Lu
45489e5dae [svn-r16335] Added the definitions for the new macros H5_HAVE_C99_DESIGNATED_INITIALIZER and H5_HAVE_C99_FUNC.
I tested them for v1.8.  I simply added them by hand for v1.9 for now.  I'll test them later.
2009-01-21 11:08:06 -05:00
Albert Cheng
22228e6f65 [svn-r16333] Bug 948 followup.
Moved a comment up to a more appropriate spot.
No execution change.

Tested: jam pp.
2009-01-19 22:41:21 -05:00
HDF Tester
fdc7b17438 [svn-r16329] Snapshot version 1.9 release 27 2009-01-18 05:04:40 -05:00
Albert Cheng
0c4e71d004 [svn-r16328] Bug 948.
The test "h5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5" sometimes hangs in THG
machines. Skip it until its hanging is resolved.
2009-01-18 03:09:03 -05:00
Raymond Lu
b60c8e2062 [svn-r16327] Added some missing file names for OpenVMS. Tested on OpenVMS for 1.8. 2009-01-16 16:40:20 -05:00
Mike McGreevy
ce7219fc8c [svn-r16324] Purpose:
Code Cleanup

Description:

    - Pulled out repetitive cache stats code into its own new macro.

    - Converted HDasserts in cache stats macros to if / HGOTO_ERROR statments
      in order to keep code consistent.

Tested:

    jam, smirom, liberty
2009-01-15 14:16:40 -05:00
Albert Cheng
50ccdbcc7d [svn-r16321] Purpose:
Improvement

Description:
Modified the warning messages from the Version mismatch checking to suggest
the users to try recompiling or checking the shared lib setting.

Platforms tested:
Tested in Jam only since it was just a simple text string changes.
2009-01-14 18:50:17 -05:00
Pedro Vicente Nunes
60ab04d383 [svn-r16319] add conditinal nan detection to some missing places
tested: windows, linux
2009-01-14 16:37:25 -05:00
Raymond Lu
ea92781324 [svn-r16316] Added support for OpenVMS pathname for external links.
Tested on jam.  Tested v1.8 on OpenVMS.
2009-01-14 15:41:17 -05:00
Neil Fortner
6564dbcfaa [svn-r16308] Purpose: Fix problem with H5Tpack
Description:
If a compound type was packed except for some extra space at the end, H5Tpack
would not modify the type and the extra space would remain.  Changed
H5T_is_packed to fix this behaviour.

Tested: jam, smirom (h5committest - linew down)
2009-01-14 10:30:51 -05:00
Quincey Koziol
a365f0e6aa [svn-r16306] Description:
Bring r16305 back from revise_chunks branch:

	Add detection of C99 "designated initializers" to configure script and
use new H5_HAVE_C99_DESIGNATED_INITIALIZER macro to conditionally compile
default layout variables in src/H5Pdcpl.c

	Also, minor code cleanups, etc.

Tested on:
	FreeBSD/32 6.3 (duty) in debug mode
	(Other platforms tested on branch)
2009-01-14 08:09:42 -05:00
Scot Breitenfeld
84a14c0f25 [svn-r16303] Description:
added:

!DEC$ATTRIBUTES reference ::

for character strings being passed in to C to fix bug in VMS for functions
h5sdecode_f and h5sencode_f.
2009-01-13 16:14:40 -05:00
Pedro Vicente Nunes
164ecb187f [svn-r16301] Add a mention to the usage that the default minimum size for compression is 1024 bytes
M - is an integer greater than 1, size of dataset in bytes (default is 1024)

#bgz 1426

tested: windows, linux
2009-01-13 16:03:45 -05:00
Pedro Vicente Nunes
108699a7a8 [svn-r16300] Added an option to avoid dealing with NaNs
-N, --nan               Avoid NaNs detection
Note: there is no shell script run for datasets with NaN because the output is non portable (different results and NaN strings for different systems)

Tested: windows, linux
2009-01-13 11:33:31 -05:00
Pedro Vicente Nunes
050ded21d3 [svn-r16299] Print a message of
Storage:   information not available
When displaying storage information for VL and dataset region types
Added 2 shell runs that display this information
#818

Tested: windows, linux
2009-01-13 10:37:37 -05:00
Neil Fortner
e5630f3351 [svn-r16296]
Disable more file drivers incompatible with family file driver in external_set_elink_cb in links.c.

Tested: jam check-vfd
2009-01-11 12:23:21 -05:00
Neil Fortner
b5008f9e3f [svn-r16294] Changes to links.c to prevent the core file driver from being used as the member
file driver for a family file.  This was causing problems with check-vfd.

Tested: jam
2009-01-10 16:13:48 -05:00
Mike McGreevy
9dc5ebd07b [svn-r16292] Purpose:
Bug Fix

Descriotion: 

    Removing problematic debugging code, and switching a leftover TRUE verbose
    statement to FALSE in cache_common.c

Tested:

    jam, liberty
2009-01-10 09:57:31 -05:00