Commit Graph

134 Commits

Author SHA1 Message Date
H. Joe Lee
e0083c48e9
chore: fix grammar - get hang -> get hung (#3272) 2023-07-24 14:44:02 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
fd56a593b7
Remove HD from C std lib file ops (#3206)
* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite
2023-06-29 08:19:31 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Dana Robinson
7a44581a84
Rename HDassert() to assert() (#3191)
* Change HDassert to assert

* Fix bin/make_err
2023-06-28 07:31:56 -07:00
Quincey Koziol
940bdafacb
Remove unnecessary fields from cache structs (#2951)
* Remove unnecessary 'magic' field from cache structs

Signed-off-by: Quincey Koziol <quincey@koziol.cc>

* Committing clang-format changes

---------

Signed-off-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-05-15 13:54:58 -05:00
Quincey Koziol
49a71463a0
Comment cleanup (#2689)
* Clean up content and redundant logging in comments.
2023-04-11 09:41:32 -05:00
Dana Robinson
d93c6fae43
Removes MPE instrumentation support. (#2245)
* Removes MPE instrumentation support.

The Autotools will no longer accept --with-mpe= and the logging commands
have been removed from the FUNC_ENTER macros. CMake has never supported
instrumenting for MPE.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-11-09 11:06:26 -08:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
luzpaz
174505ca3c
Fix typos found in the rest of the hdf5 code-base (#1985)
* Fix typos found in the rest of the hdf5 code-base

* Typo in tool.cmake

* Revert "Typo in tool.cmake"

This reverts commit 06b8403d99.

* Fix clang-format styling
2022-08-10 13:57:26 -07:00
Allen Byrne
ae414872f5
Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
Dana Robinson
19a59c29b9
Fixes a bug where t_cache fails due to a string size being too small (#1720)
* Fixes a bug where t_cache fails due to a string size being too small

Recent warning reductions led to an incorrect string size being passed
to h5_fileaccess, causing the test to silently fail. In addition to
fixing the bug, the test will now fail noisily on setup failures.

* Updates the t_cache test to fail noisily on setup errors
2022-05-04 07:53:13 -07:00
jhendersonHDF
2ba7a01bff
Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings

* Move HDfree_const to H5private.h for wider use

* Print output from all ranks in parallel tests on allocation failure

* Move const pointer freeing macro to h5test.h for now
2022-05-01 15:54:41 -05:00
Wei-keng Liao
f2a8ac16d7
free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638)
* free MPI_Group/MPI_Comm/MPI_Datatype objects

* fix clang-format style
2022-04-15 08:20:23 -07:00
Scot Breitenfeld
e8ea850004
spelling fixes (#1561) 2022-03-31 10:42:30 -05:00
jhendersonHDF
86ef00fd67
Unify handling of collective metadata reads status (#1206) 2022-01-29 14:22:30 -06:00
Sean McBride
4ac6ccc021
Snprintf2 (#1399)
* Replaced many uses of sprintf with safer snprintf

Many very straightforward, but in a few cases added a length parameter to some private functions, because buffer length was otherwise unknowable.

* Removed unnecessary use of static on small buffers

This improves thread safety.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-01-28 16:43:48 -06:00
Scot Breitenfeld
f859cb732b
Fixed Spelling Errors (#1166)
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
Dana Robinson
f0e0c7ed2a
Fixes parallel issues from recent C99 changes (#809)
* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Even more missed FUNC --> __func__ macros
2021-06-30 10:17:35 -05:00
Quincey Koziol
3dbbd8aea1
Align with "parallel fence" changes (#479)
* Small code updates and simplifications

* Committing clang-format changes

* Fix 'make installcheck' for parallel builds

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-03-24 15:57:32 -05:00
Larry Knox
2ea165efd0
Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
Allen Byrne
6db183590f
develop revert source to clang-format version 11 (#293)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction
2021-01-29 06:55:18 -06:00
Quincey Koziol
adf7b1d4cf
Add flag to H5CX_pop that allow setting the properties to return to application to be skipped. (#134) 2020-12-01 10:15:34 -06:00
Quincey Koziol
5ff09ae971
Basic alignment with async branch (#115)
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.

* Update minor error code to reflect change within library

* Update the error output to match library
2020-11-23 10:18:26 -06:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
David Young
d20e1274a7 Repair more format strings. 2020-09-25 20:03:20 -05:00
David Young
f8652be7fb Fix a bunch of format string errors reported by Larry. 2020-09-25 11:43:15 -05:00
Dana Robinson
9a97411a61 Merge pull request #2296 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop
* commit '6486e06545bf637d46e18a787395542f4fca143a':
  Revert "Moved -Wunsuffixed-float-constants to the developer warnings."
  Moved -Wunsuffixed-float-constants to the developer warnings.
  Fixed a bug in testpar/t_cache.c concerning checking expected vs. actual cache entry reads and writes.
2020-01-23 16:35:52 -06:00
kmu
838d4ec56b squash cast warning fix 2020-01-23 15:12:00 -06:00
Dana Robinson
0444f65140 Merge branch 'develop' into develop_minor 2020-01-23 10:17:40 -08:00
kmu
2de0ce0d8b merge and fix conflict 2020-01-22 21:30:36 -06:00
Dana Robinson
4e00ee2916 Fixed a bug in testpar/t_cache.c concerning checking expected
vs. actual cache entry reads and writes.
2020-01-22 12:31:56 -08:00
kmu
408b9b1f3b fix uninitizlized warning 2020-01-21 12:29:48 -06:00
kmu
628d267162 merge and fix conflict 2020-01-19 08:09:44 -06:00
kmu
9712fad601 fix unused related warnings 2020-01-13 13:20:19 -06:00
kmu
f22e258586 remove unsed var,function,macro, etc 2019-12-06 12:03:19 -06:00
Allen Byrne
ba974c031d OESS-29 Update HD prefix mostly 2019-08-24 14:07:33 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable.
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
2019-03-09 21:41:38 -06:00
Jordan Henderson
65a820ae89 Fix some collective metadata read issues 2019-02-11 18:31:23 -06:00
Dana Robinson
18e6ec82d0 Squash merge of MDC logging changes. 2018-12-20 20:41:42 -08:00
Dana Robinson
6fccabed2e Missed some function renames in error text. 2018-11-27 11:50:35 -08:00
Dana Robinson
8cf3bfb14b Yanked all MPI-1 calls 2018-11-27 10:31:54 -08:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Quincey Koziol
4766d282ff Corrections for parallel I/O & tests. 2018-03-21 00:09:16 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Allen Byrne
205d33f332 Cleanup overuse of include files 2018-02-14 10:08:09 -06:00