Commit Graph

2727 Commits

Author SHA1 Message Date
Ruey-Hsia Li
970f5f068c [svn-r667] Revised output because now the h5dump tests are done in
the directory testfiles.
1998-09-03 15:47:17 -05:00
Ruey-Hsia Li
23d08b3509 [svn-r666] Added TESTS entries to Makefile.in for automatic tests.
Initial version of testh5dump.sh which runs the h5dump tests.
1998-09-03 15:46:32 -05:00
Ruey-Hsia Li
2bbe015b85 [svn-r665] HDF5 binary files for h5dump tests. Generated by h5dumptst.c. 1998-09-03 15:43:57 -05:00
Ruey-Hsia Li
5a1be3bda3 [svn-r664] Initial version of program that generates hdf5 binary files for
h5dump tests.
1998-09-03 15:20:02 -05:00
Ruey-Hsia Li
85bd27dbd7 [svn-r663] Expected output for the h5dump test. 1998-09-03 15:16:05 -05:00
Robb Matzke
6589650eea [svn-r658] Changes since 19980901
----------------------

./test/dtypes.c
	Got rid of one of some of the `increases alignment' warnings.

./test/tselect.c
	Got rid of an unused variable.
1998-09-03 08:49:48 -05:00
Quincey Koziol
97f56b57a0 [svn-r654] Fixed last bug (hah! ;-) for beta release, changed H5Gget_stat to H5Gget_objinfo
and renamed internal functions to match up with the renamed API functions.
1998-09-02 16:16:24 -05:00
Quincey Koziol
4aa79bb211 [svn-r641] Changed function names for beta release. 1998-08-31 22:35:23 -05:00
Ruey-Hsia Li
ca953eb331 [svn-r636] Removed warning messages during compilation.
Used H5Gstat to check object type.
Modified h5dumputil.c to reflect changes of h5tools.c
1998-08-31 14:52:53 -05:00
Robb Matzke
2ab2e14bb5 [svn-r635] Changes since 19980831
----------------------

./Makefile.in
	Running `make distclean' will not fail if one of the
	subdirectories has already been cleaned.

./config/BlankForm
./config/irix5.3
	Cleaned it up more.  Added better support/documentation for
	systems that have more than one compiler.

./config/alpha-dec-osf4.0	[NEW]
	Added a new config file as a result of testing on Jim Reus's
	machine.

./test/chunk.c
	Scaled down the testing range so we can actually run it
	interactively.

./tools/h5import.c
	Included <unistd.h> to get rid of warning for close().

./src/H5detect.c
	Seg-faults on Linux for some reason when NDEBUG is defined, so
	I just undef it at the top of the source.

./test/big.c
	Added a fflush().

./tools/h5ls.c
	The `-d' flag now works even when `-v' isn't specified.

./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
	Indented according to hdf5 standards.

	Fixed compiler warnings
1998-08-31 14:21:23 -05:00
Robb Matzke
1b1be9918c [svn-r627] Changes since 19980827
----------------------

./src/H5G.c
	Fixed a link count on groups.  Groups were always created with
	a link count of zero instead of one.

./src/H5Gpublic.h
	Added H5G_NTYPES so applications can easily declare arrays
	which are indexed by object type.

./src/H5O.c
	Calling `H5O_link(&ent,0)' will succeed when the file is open
	for read only because it's the only way to get the object's
	current link count.

./tools/h5ls.c
	Can take non-group object names on the command line (and
	multiple objects).  Reorganized to be more extendible. The
	link count is displayed for `-v'.

./src/H5F.c
	Dumping of cache statistics is controlled by only the
	HDF5_DEBUG environment variable and not the H5F_ACC_DEBUG flag
	for H5Fopen() and H5Fcreate() since this makes it similar to
	the other debugging options.

./src/H5R.c
./test/ragged.c
./test/Makefile.in
	Tests pass but still a little work left to be done.
1998-08-28 10:24:12 -05:00
Robb Matzke
eb5e01d37c [svn-r620] Changes since 19980825
----------------------

./MANIFEST
./src/H5R.c		[NEW]
./src/H5Rprivate.h	[NEW]
./src/H5Rpublic.h	[NEW]
./src/Makefile.in
./src/hdf5.h
./test/ragged.c		[NEW]
	Preliminary support for 2d ragged arrays for Mark Miller and
	Jim Reus.  Not fully implemented yet. The test is not actually
	part of `make test' because we still have some memory problems.

./src/H5E.c
./src/H5Epublic.h
	Added H5E_RAGGED as a major error number.

./bin/release
	Checks the MANIFEST file against `svf ls' on systems that have
	it.

./bin/trace
	Fixed a bug that caused arguments of type `void *x[]' to not
	be handled.

./src/H5.c
	Removed unused variables and changed a couple types to
	fix compiler warnings.

	Added tracing support for ragged array object ID's and arrays
	of pointers.

./src/H5D.c
	H5Dcreate() will complain if either of the property lists are
	invalid (instead of using the default).

./src/H5D.c
./src/H5Dprivate.h
	Split H5Dget_space() into an API and internal function so it
	can be called from the new ragged array layer.

./src/H5Fistore.c
	Fixed warnings about unsigned vs. signed comparisons.

./src/H5Flow.c
	Fixed a warning about a variable being shadowed in the MPI-IO
	stuff.

./src/H5Iprivate.h
./src/H5Ipublic.h
	Added the H5_RAGGED atom group.

./src/H5Shyper.c
	Fixed some freeing-free-memory errors that resulted when
	certain arrays were freed but the pointers were left in the
	data structures.  I simply set the pointers to null after they
	were freed.

./src/H5Sprivate.h
./src/H5Sselect.c
	Split the H5Sselect_hyperslab() function into an API and a
	private function so it could be called from the ragged array
	layer.

	Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to
	get rid or compiler warnings.

./src/H5Tconv.c
	Removed a misleading comment.

./test/bittests.c
	Fixed a warning about a printf().

./test/cmpd_dset.c
	Fixed warnings about unused variables because of test #11
	being commented out.

./bin/trace
	Shortened the right margin for the output to allow room for
	the `);' at the end of the TRACE() macros.
1998-08-27 11:48:50 -05:00
Ruey-Hsia Li
4f2d4020d8 [svn-r611] Removed warning messages during compilation. 1998-08-21 12:22:14 -05:00
Robb Matzke
49133159c8 [svn-r609] Debugging.html
Fixed errors

H5.c
	Fixed core dump with setvbuf() for debugging.

H5Fistore.c
	Fixed bug with sparse datasets.

H5Omtime.c
	Found a typo in "Posix Programmer's Guide".  The `%z' in the
	strftime() should be `%Z' instead.

H5T.c
H5Tpublic.h
	Improved api tracing for H5Tinsert_array().

h5tools.c
	Doesn't dump core for empty datasets.
1998-08-20 17:57:35 -05:00
Albert Cheng
4322bfe90a [svn-r605] Added in h5dump tools created by Ruey-Hsia.
Renamed what was called h5dump.c to h5tools.c.
Changed Makefile.in to reflect all the changes.
(Make dependence is to be processed later.)

Tested in Solaris 2.5
1998-08-19 16:46:55 -05:00
Robb Matzke
de87544235 [svn-r578] Changes since 19980805
----------------------

./MANIFEST
	Replaced Compression.html with Filters.html

./doc/html/Filters.html
./src/H5Ocomp.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5Z.c
./src/H5Zprivate.h
	Added two extra arguments to H5Pget_filter() in order to
	retrieve the filter name.  The name is the name registered for
	the filter with H5Zregister(), but if the dataset creation
	property originally came from an existing file then the name
	is that which is stored in the file.

./tools/h5ls.c
	The `-v' option now prints the names of the filters.

./src/H5B.c
./src/H5Fistore.c
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5P.c
	Plugged a memory leak.

./src/H5MMprivate.h
	H5MM_malloc(0) and H5MM_calloc(0) actually allocate a single
	byte in order to be sure that we get a valid pointer.

./src/H5S.c
./src/H5Sselect.c
	Fixed pointer->integer conversions in error return values in
	three places.
1998-08-06 14:39:22 -05:00
Robb Matzke
002b1494b7 [svn-r569] Changes since 19980731
----------------------

./bin/release
	Added ./Makefile to the distribution again -- it got lost in
	the changes last week although it isn't all that important a
	file since it gets clobbered by configure anyway.

./bin/trace
./doc/html/Filters.html
./doc/html/H5.format.html
./doc/html/H5.user.html
./src/H5.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5E.c
./src/H5Epublic.h
./src/H5Farray.c
./src/H5Fistore.c
./src/H5Fprivate.h
./src/H5O.c
./src/H5Ocomp.c
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Sprivate.h
./src/H5Ssimp.c
./src/H5Z.c
./src/H5Zprivate.h
./src/H5Zpublic.h
./src/hdf5.h
./test/dsets.c
./tools/h5ls.c
	Added the data filter pipeline, a generalization of the
	compression stuff which allows things like checksums,
	encryption, compression, performance monitoring, etc.  See
	./doc/html/Filters.html for details -- it replaces the
	Compression.html doc.

./src/H5T.c
	Cleaned up debugging output.

./config/linux
	Added checks for egcs and pgcc and changed optimization flags
	for the compilers.

./src/H5G.c
./tools/h5dump.c
	Fixed compiler warnings in these files and others.

./configure.in
./src/H5private.h
./test/mtime.c
	Added a check for difftime() and defined HDdifftime() to do
	something else on systems that don't have difftime().
1998-08-05 17:22:59 -05:00
Robb Matzke
a34534c9b8 [svn-r546] Changes since 19980724
----------------------

./MANIFEST
./doc/html/H5.format.html
./src/H5O.c
./src/H5Oprivate.h
./src/H5Omtime.c	[NEW]
./src/H5private.h
./src/Makefile.in
	Added the modification time message.  If an object header has
	this message then it's value is updated with the current time
	whenever anything changes in the object header.

./acconfig.h
./configure.in
	Alas, there seems to be no standard way to convert a string
	time like 19980727122800 in UTC to a time_t since mktime()
	only converts local times to time_t.  So I've modified the
	configuration to check for various ways of getting the time
	zone information:

	   * Added checks for the `tm_gmtoff' field of `struct tm'.
	   * Added a check for the `timezone' global variable.
	   * Added a check for `struct timezone'.
	   * Added a check for BSDgettimeofday().
	   * Added a check for gettimeofday() although it doesn't
	     actually set the timezone argument on some systems.
	   * Added a check to see if `tm_zone' is a member of `struct tm'.
	   * Added a check to see if `tzname' is a global variable.
	   * Added a check to see if `struct tm' is defined in time.h
	     or sys/time.h.

	It's not difficult to get the right UTC modification message
	into the object header, but some systems might have problems
	getting the right time back out (Irix64 is one) and those
	systems will report zero for the H5G_stat_t.mtime from an
	H5Gstat() call as if the mtime message isn't even present.  It
	will, however, continue to be updated as normal.

./src/H5G.c
./src/H5Gpublic.h
	The H5G_stat_t struct now contains an `mtime' field which will
	hold the object modification time.  If the object has no
	object modification time then the `mtime' will be initialized
	to zero.

	Fixed a bug in H5G_stat() that caused the `objno' field of the
	H5G_stat_t to be set incorrectly on some machines.

./src/H5D.c
	Writing to external datasets fail if the hdf5 file is not open
	for writing.

	A modification time message is added to the dataset object
	header when it's created and H5O_touch() is called from
	H5D_write() to update that message.

./src/H5T.c
	Fixed a bug in H5Tget_member_dims() that caused a segmentation
	fault if one of the output array arguments was the null
	pointer.

	Relaxed the member dimension checking in H5Tinsert_array() so
	it can also be used for scalar members.

./test/Makefile.in
	Added additional file names to the `mostlyclean' target.

./tools/h5dump.c
./tools/h5tools.h
	Increased the temporary buffer size to 1MB.

	Added support for printing compound data types with array
	members.

	When printing H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR we escape
	double quote characters.

./tools/h5ls.c
	Changed the output format a little because we were starting to
	get too much info to fit on a line.  Without `--verbose' each
	object occupies one line of output.  Otherwise, additional
	information is printed below the object name: object file
	address, comment, and modification time.  If `--dump' is given
	then the data is printed after the other information.

./test/cmpd_dset.c
	Changed the way the dataset is initialized to be more uniform.
1998-07-29 11:43:59 -05:00
Robb Matzke
78c70d7be5 [svn-r541] Changes since 19980723
----------------------

./tools/h5dump.c
./tools/h5ls.c
./tools/h5tools.h
	Able to handle compound data types now.  Moved code that
	chooses memory data type based on file data type from h5ls to
	libh5tools.a(h5dump.o)
1998-07-24 09:28:32 -05:00
Robb Matzke
c8d2f1e17a [svn-r537] Changes since 19980722
----------------------

./src/H5A.c
./src/H5Apublic.h
./test/tattr.c
	Switched the order of the second and third argument of
	H5Aget_name() to make it consistent with other functions that
	take buffers and buffer sizes.

./src/H5G.c
./src/H5Gpublic.h
./src/H5Gprivate.h
	The H5Gget_comment() function returns the size of the comment
	including the null terminator.  If the object has no comment
	then zero is returned.  If an error occurs then a negative
	value is returned.

./MANIFEST
./tools/Makefile.in
./tools/h5tools.h	[NEW]
./tools/h5dump.c	[NEW]
	Created a library for printing values of datasets in a way
	that looks nice.  It's not done yet, but I needed it for
	debugging the contents of files from Jim Reus.

./tools/h5ls.c
	Added the `-d' and `--dump' options which cause the contents
	of a dataset to be printed.  Added `-w N' and `--width=N'
	options to control how wide the raw data output should be. If
	you want single-column output then say `-w1'.

	Printing dataset values can now handle datasets of any integer
	or floating point atomic type.  As a special case, integers
	which are one byte wide are treated a character strings for
	now.

	Sample output:
	    $ h5ls --dump --width=60 banana.hdf
	    ARCHIVE                   0:0:0:744            Dataset {52/Inf}
		Data:
		    (0) "U struct complex { double R; double I; };\012V"
		    (43) " double;\012"
	    U                         0:0:0:2500           Dataset {256/512}
		Data: printing of compound data types is not implemented yet
	    V                         0:0:0:3928           Dataset {256/512}
		Data:
		    (0) 0, 0.015625, 0.03125, 0.046875, 0.0625,
		    (5) 0.078125, 0.09375, 0.109375, 0.125, 0.140625,
		    (10) 0.15625, 0.171875, 0.1875, 0.203125, 0.21875,
		    (15) 0.234375, 0.25, 0.265625, 0.28125, 0.296875,
	    ...
1998-07-23 16:19:17 -05:00
Robb Matzke
29a029d7e7 [svn-r529] Changes since 19980722
----------------------

./src/H5.c
	Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id.

	Added array tracing where the array rank is stored in a simple
	data space.  Just use the name of the data space argument when
	declaring the array argument:

	    herr_t
	    H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op,
				 const hssize_t start[/*space_id*/],
				 const hsize_t _stride[/*space_id*/],
				 const hsize_t count[/*space_id*/],
				 const hsize_t _block[/*space_id*/])

	and when the program runs you'll see array values printed:

	    H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET,
                                start=0xbfffef4c {0}, _stride=NULL,
                                count=0xbfffef44 {64},
				_block=NULL) = SUCCEED;

	Added more symbolic data types to the tracing output.

./src/H5A.c
./src/H5Apublic.h
./src/H5D.c
./src/H5Dpublic.h
./src/H5F.c
./src/H5Fpublic.h
./src/H5G.c
./src/H5Gpublic.h
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sall.c
./src/H5Shyper.c
./src/H5Spoint.c
./src/H5Spublic.h
./src/H5Sselect.c
./src/H5Ssimp.c
./src/H5TB.c
./src/H5V.c
	Changed some API argument names to be more consistent with
	other API functions and to produce better tracing output.
	Reformatted some long lines. Indented printf statements.

./tools/h5ls.c
	Fixed warnings about unsigned vs. signed comparisons.
1998-07-22 13:45:46 -05:00
Robb Matzke
b56f011989 [svn-r526] Changes since 19980721
----------------------

./tools/h5ls.c
	If the dataset is of type H5T_NATIVE_CHAR then we print the
	value as a string.  This is temporary -- I plan to add better
	control of this later but needed something now for debugging.

./src/H5Fistore.c
	Squashed a bug in the chunk caching code that caused the wrong
	chunk to be returned.

./bin/trace
./src/H5.c
	Added support for printing values of array arguments when the
	size of the array is supplied by some previous argument.  You
	must declare the argument as an array in order for the
	automatic tracing stuff to work.  For instance, the third
	argument of H5Pset_chunk() is an array whose size is
	determined by the second argument `ndims'.  Here's how you
	should declare it:

	    herr_t
	    H5Pset_chunk(hid_t plist_id, intn rank, hsize_t dims[/*rank*/])

	The comment inside the `[]' is the name of some previous
	integer argument (int, unsigned, size_t, ssize_t, hsize_t,
	hssize_t).  The trace output will look something like:

	    H5Pset_chunk(plist=1234567, rank=2, dims=0x112233 {11, 22})

	Changed tracing so that data types are printed out
	symbolically when possible.

	Changed tracing so data type initializations are not printed.
	This used to be confusing because lots of H5Tcopy() and
	H5Tregister...() calls showed up before the applications first
	explicit API call.

./src/H5Ipublic.h
	Changed the file atom group from zero to one so printing of
	atoms during tracing is more consistent -- they're all big
	numbers now.

./src/H5A.c
./src/H5E.c
./src/H5F.c
./src/H5G.c
./src/H5Sselect.c
./src/H5T.c
./src/H5TB.c
./src/H5Z.c
	Accidently modified these when working on the tracing, but
	nothing should have changed.

./src/H5P.c
	Changed the definition of H5Pset_chunk() for tracing.

./src/H5S.c
./src/H5Spublic.h
	Changed the definitions of H5Sset_extent_simple() and
	H5Screate_simple() for tracing.  Changed the FUNC_ENTER() name
	for H5Screate_simple() so tracing shows the correct name.
1998-07-22 08:51:51 -05:00
Robb Matzke
2423411a64 [svn-r522] Changes since 19980720
----------------------

./src/H5Gpublic.h
./src/H5Gprivate.h
./src/H5G.c
./test/dsets.c
./doc/html/Groups.html
	Added the H5Gset_comment() and H5Gget_comment() functions
	described in an earlier e-mail.

./src/H5.c
	Fixed a bug in the tracing code that caused certain data space
	enum types to not be printed.  Nested case statements can get
	confusing to the eyes!

./tools/h5ls.c
	Prints the first 50 bytes or so of object comments.
1998-07-20 16:01:32 -05:00
Robb Matzke
1dbacc8377 [svn-r517] Changes since 19980720
----------------------

./bin/release
	The archive names have only three parts to a version number.
	Instead of `hdf5-1.2.3d.tar.gz' they will be named like
	`hdf5-1.2.3.tar.gz'.

./src/H5public.h
./src/H5.c
	Dropped the patch level from the version number.  The version
	number is now a major number, a minor number, and a release
	number.

./doc/html/Version.html
	Updated to get rid of patch numbers.

./tools/h5repart.c
	Added a `-V' flag like for `h5ls' that prints the version number.
1998-07-20 11:05:43 -05:00
Robb Matzke
79d65106ab [svn-r514] Changes since 19980715
----------------------

./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsplit.c
	Changed the allocation size request from `size_t' to `hsize_t'
	because it was overflowing for the `big' test.

./src/H5detect.c
	If `long double' and `double' are the same size then we define
	H5T_NATIVE_LDOUBLE to be the same as H5T_NATIVE_DOUBLE.
	Similarly for `long' vs. `long long' and `unsigned long' vs.
	`unsigned long long'.

./test/Makefile.in
	Added `big' to the list of tests to normally run.

./test/big.c
	Added a check to see if the file system supports holes and if
	it doesn't then the test is skipped.

./RELEASE
	Added a couple minor details details about API tracing and
	symbolic links.

./src/H5public.h
	Added comments about the use of hbool_t. Fixed a comment
	spelling error.

./test/testhdf5.h
	Changed the way the version number is printed.  The old method
	was `hdf5-1.2.3d' and the new method is `hdf5 version 1.2
	release 3'

./tools/h5ls.c
	Only prints the max dimension if it differs from the current
	dimension or if verbose mode is enabled.  Added switches `-?',
	`-h', and `--help' to print a usage message.  Added switches
	`-v' and `--verbose' to generate more verbose output.  Added
	switches `-V' and `--version' to print the version number and
	exit.  The version number is printed like: This is h5ls
	version 1.0 release 24'

./bin/h5vers	[NEW]
	This script prints, sets, and/or increments the hdf5 version
	number. It can be run from the top directory or any of the
	child directories like src, tools, test, etc. Some examples:

	  $ h5vers				# Display current version
	  1.0.24

	  $ h5vers -v
	  version 1.0 release 24		# Display current version.

	  $ h5vers -s 5.2.8			# Set version and display
	  5.2.8

	  $ h5vers -s 2.1
	  2.1.0

	  $ h5vers -s hdf5-1.0.24a.tar.bz2
	  1.0.24

	  $ h5vers -s 'version 2.0 release 8'
	  2.0.8

	  $ h5vers -s 'junk 22 junk 33 more junk 66 and 99 junk'
	  33.66.99

	  $ h5vers -i major			# Increment from 1.0.24
	  2.0.0

	  $ h5vers -i minor			# Increment from 1.0.24
	  1.1.0

	  $ h5vers -i release			# Increment from 1.0.24
	  1.0.25

	  $ h5vers ~/hdf5/src/H5public.h	# Use an alternate file
	  1.0.24

./bin/checkapi		[NEW]
	Run from the src directory with arguments H5[A-Z]*.c and it
	will print the locations of each place where an API function
	was called from within the library.  Use it as the compile or
	grep command under Emacs and you can C-x ` through the list.

./bin/debug-ohdr	[NEW]
	Keeps track of H5O_open() and H5O_close() debugging messages
	and lists the file addresses of the object headers that are
	opened but never closed.  You must enable the `o' debugging at
	configuration time and pipe stderr into this script.

./bin/errors
	Added a note to indicate that this script no longer works
	because of changes in the HRETURN_ERROR() and HGOTO_ERROR()
	macros.

./bin/iostats		[NEW]
	Watches output from the Linux strace program and accumulates
	statistics about low-level access to an hdf5 file.  The output
	is a list of 2d data points which can be plotted by gnuplot to
	show file seeking behavior.

./MANIFEST
	Added new files.
1998-07-17 14:03:43 -05:00
Quincey Koziol
13834c0d94 [svn-r490] Changed more API functions to the new names as documented. 1998-07-14 16:14:22 -05:00
Robb Matzke
614ae2dce6 [svn-r485] Changes since 19980710
----------------------

./Makefile.in
./config/commence.in
./config/conclude.in
./config/depend.in
./src/Makefile.in
./test/Makefile.in
	Tests are no longer installed for `make install'.  Added a new
	target `make tests' that builds the tests but doesn't run them.

./configure.in
./configure		[REGENERATED]
./src/H5config.h.in	[REGENERATED]
	Added detection of fork() and waitpid().  If present the
	contants HAVE_FORK and HAVE_WAITPID will be defined in
	H5config.h.

./test/dtypes.c
	Minor tweaks for systems that don't have fork() or waitpid().

./MANIFEST
./tools			[NEW]
./tools/Makefile.in	[NEW]
./tools/h5debug.c	[NEW]
./tools/h5import.c	[NEW]
./tools/h5ls.c		[NEW]
./tools/h5repart.c	[NEW]
	Added a tools directory and moved tools from the src directory
	to here.
1998-07-13 10:35:21 -05:00