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dca6370691
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1847 Commits

Author SHA1 Message Date
Allen Byrne
dca6370691
Move C++ and Fortran and examples to HDF5Examples folder (#4552) 2024-06-08 06:46:09 -05:00
Allen Byrne
162e7d676d
Allow HDF5_LIB_INFIX to work with DLL (#4500) 
* Allow HDF5_LIB_INFIX to work with DLL

* Separate individual library name into parts and add suffix option

* Java cannot use alternative names and removed extra setting

* Incorporate the underscore into the CORE name
 2024-05-28 08:27:15 -07:00
Scot Breitenfeld
fe0df13115
Add H5fortkit dependecy for H5Rff.F90 (#4482) 2024-05-14 11:10:43 -05:00
Julien Schueller
239d2f849d
CMake: Fix mingw/fortran build (#4466) 2024-05-10 12:33:55 -05:00
Scot Breitenfeld
dfc6295c1d
Fixed failures with xl compilers. (#4458) 
* type cast constant

* fixed return types
 2024-05-02 15:33:20 -05:00
Scot Breitenfeld
abf8b01f55
H5R Fortran wrappers and misc. H5R API/DOC updates (#4446) 
- Add Fortran H5R APIs:
      h5rcreate_attr_f, h5rcreate_object_f, h5rcreate_region_f,
      h5ropen_attr_f, h5ropen_object_f, h5ropen_region_f,
      h5rget_file_name_f, h5rget_attr_name_f, h5rget_obj_name_f,
      h5rcopy_f, h5requal_f, h5rdestroy_f, h5rget_type_f

    - Fixed function H5Requal actually to compare the reference pointers

      Fixed an issue with H5Requal always returning true because the
      function was only comparing the ref2_ptr to itself.
 2024-05-01 05:39:01 -07:00
bmribler
84fac90ce8
Correct the high-level library link (#4398) 
* Correct the high-level library link

The link currently used points to 1.13 release.  Changed to use the md file instead.

* Update Doxyfile for md files

* Update to include md files
 2024-04-12 12:37:15 -07:00
Scot Breitenfeld
527ab8c2fd
Removed duplicate entries in compile line for h5* compiler wrappers (#4360) 
* h5fc remove duplicate args
* h5 wrappers remove duplicate args
 2024-04-09 17:01:00 -07:00
Scot Breitenfeld
f6ae241032
Addresses configuration fortran testing flags (#4276) 
* turn warnings to errors in fortran configure test

* Intel fortran test fix
 2024-03-28 16:55:32 -05:00
Scot Breitenfeld
df9d2eafab
MPI type correction (#4268) 
* corrected type for MPI_*_f2c APIs

* fixed return type of callback

* reset compilation flags of logical test program
 2024-03-27 22:20:25 -05:00
H. Joe Lee
ce3784de25
Replace user-define with user-defined (#4261) 2024-03-27 13:55:44 -07:00
Scot Breitenfeld
724eaaf618
Determine MPI LOGICAL during build, used in tests. (#4246) 2024-03-26 09:05:51 -07:00
Scot Breitenfeld
6837fe5bc8
Addressed Fortran issues with promoted integers and reals via compilation flags, part 2 (#4221) 
* addressed issue wit promoted integers and reals

* fixed h5fcreate_f

* added option to use mpi_f08

* change the kind of logical in the parallel tests

* addressed missing return value from callback
 2024-03-25 07:42:03 -05:00
Scot Breitenfeld
c1a56f432e
Revert "Addressed Fortran issues with promoted integers and reals via compil…" (#4220) 
This reverts commit 06c42ff038.
 2024-03-23 07:16:43 -07:00
Scot Breitenfeld
06c42ff038
Addressed Fortran issues with promoted integers and reals via compilation flags (#4209) 
* addressed issue wit promoted integers and reals

* added option to use mpi_f08
 2024-03-22 11:52:58 -05:00
Scot Breitenfeld
8621663b99
Reworked H5Epush_f (#4153) 2024-03-19 04:59:32 -07:00
Scot Breitenfeld
e913eee81c
defined CMAKE_H5_HAVE_DARWIN (#4146) 2024-03-15 10:05:14 -07:00
Scot Breitenfeld
ece121b415
Fixed misc. H5E fortran failures due to previous PR (#4138) 
* fixed promotion of integers and reals tests and check-passthrough-vol failure

* fixed cygwin issue
 2024-03-15 07:37:22 -05:00
Jouke Witteveen
cfb1c798b9
Don't set the rpath when linking statically (#4125) 2024-03-13 08:03:21 -07:00
Dana Robinson
0ea1d7280b
Clean up off_t usage (#4095) 
* Add comments to C++ and Fortran API calls that use off_t
* Remove noise casts for small integers
 2024-03-09 09:06:10 -08:00
Scot Breitenfeld
f22f538ab7
fixes compilation failures due to H5E additions (#4090) 2024-03-08 10:57:05 -08:00
Scot Breitenfeld
bc0c42695f
addressed compilation errors with gfortran 4.8 (#4082) 2024-03-07 10:44:14 -08:00
Scot Breitenfeld
9d8e882496
Added new H5E with tests. (#4049) 
Added Fortran H5E APIs:
h5eregister_class_f, h5eunregister_class_f, h5ecreate_msg_f, h5eclose_msg_f
h5eget_msg_f, h5epush_f, h5eget_num_f, h5ewalk_f, h5eget_class_name_f,
h5eappend_stack_f, h5eget_current_stack_f, h5eset_current_stack_f, h5ecreate_stack_f,
h5eclose_stack_f, h5epop_f, h5eprint_f (C h5eprint v2 signature)

Addresses Issue #3987
 2024-03-07 03:34:55 -08:00
Allen Byrne
0be892585a
Rename incorrectly named option (#4067) 
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
 2024-03-05 09:07:16 -08:00
Scot Breitenfeld
e7f41a2fbf
Fix the datatype passed to H5*exists_async APIs in tests. (#4033) 
Add a new testing function to verify C_BOOL values.
 2024-02-23 07:57:30 -06:00
Scot Breitenfeld
9c327bc616
append '-WF,' when passing C preprocessor directives to the xlf compiler (#3976) 
* append '-WF,' when passing C preprocessor directives to the xlf compiler

* strip path from compiler name
 2024-01-31 23:04:43 -06:00
Scot Breitenfeld
3a3501df2d
h5 compiler wrappers now pass all arguments passed to it to the compile line (#3954) 
* The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line.

* added testing for compiler wrappers
 2024-01-30 12:20:58 -06:00
Scot Breitenfeld
791915e92a
Fixed XL and gfortran errors (#3968) 
* fixed XL and Gfortran errors

* fixed data type len array
 2024-01-30 09:05:20 -08:00
Scot Breitenfeld
d79667eb0c
Add API support for Fortran MPI_F08 module definitions. (#3959) 
* revert to using c-stub for _F08 MPI APIs

* use mpi compiler wrappers for cmake and nvhpc
 2024-01-29 13:13:33 -06:00
Scot Breitenfeld
424f3803ea
fixed BIND name (#3957) 
* update H5Ssel_iter_reset_f test
 2024-01-24 10:19:47 -06:00
Scot Breitenfeld
54fb809382
Fortran API work. (#3941) 
* - Added Fortran APIs:
      H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
      H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F

    - Added Fortran Parameters:
      H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F

    - Added tests for new APIs
    - Removed H5F C wrapper stubs
    - Documentation misc. cleanup.
 2024-01-23 07:59:10 -08:00
Scot Breitenfeld
9d1fe2c166
renamed defined H5_VERS* to avoid conflicts (#3926) 2024-01-05 06:55:54 -06:00
Scot Breitenfeld
8f1a93f1a2
New Fortran Examples added (#3916) 
* added subfiling example

* Added filtered writes with no selection example
 2024-01-03 10:55:17 -06:00
Scot Breitenfeld
2fc140079b
Added H5Fdelete_f with test (#3912) 2023-12-30 17:33:31 -06:00
Quincey Koziol
3a21ee0877
Add 'warning density' computation to the warnhist script (#3910) 
* Add 'warning density' computation to the warnhist script, along with several
cleanups to it.   Add "--enable-show-all-warnings" configure (and CMake)
option to disable compiler diagnostic suppression (and therefore show all the
otherwise suppressed compiler diagnostics), disabled by default.  Clean up
a buncn of misc. warnings.

Signed-off-by: Quincey Koziol <qkoziol@amazon.com>
 2023-12-29 08:42:35 -06:00
Allen Byrne
fc88fcde10
Develop merge examples (#3851) 
* Merge examples repo into library

* Change grepTest to be more fault-tolerant

* Update examples macro file

* Exclude all Fortran examples from doxygen
 2023-11-27 15:30:15 -06:00
Allen Byrne
3ea21ccb3e
Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859) 2023-11-22 07:51:30 -06:00
Scot Breitenfeld
046440400f
Moved the README to markdown and expanded its overview of the files, file generation, and other Fortran wrapper development practices as mentioned in the HDF5 architectural document. I added a new figure and included the SVG file and the original xfig file it was generated from. (#3862) 2023-11-21 09:05:23 -08:00
Allen Byrne
378e99079b
cmakedefine macro uses C comments with "#undef" (#3845) 
* Correct CMake macro name
* Use ifdef for H5_HAVE_FLOAT128 like elsewhere
 2023-11-13 13:52:31 -06:00
Allen Byrne
66786fa036
Add intel oneapi windows build to CI CMake (#3836) 2023-11-10 07:36:46 -06:00
Scot Breitenfeld
6a3c859e58
Fortran Wrappers H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f (#3801) 
* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f

* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests

* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests
 2023-11-03 09:22:00 -07:00
Scot Breitenfeld
5e787741cd
Removed the use of C wrappers from H5P APIs. (#3824) 
* fix seg fault on frontier/cray

* fix seg fault on frontier/cray

* fix seg fault on frontier/cray

* removed the use of h5pclose_c

* removed the use of h5pclose_c
 2023-11-03 06:02:50 -07:00
Robert Adam
87b3e7c821
Don't build util tests when HDF5_EXTERNALLY_CONFIGURED=ON (#3781) 
Fixes #3780
 2023-10-30 12:47:06 -05:00
Scot Breitenfeld
207d749a28
Added missing DLL for H5PGET_ACTUAL_SELECTION_IO_MODE_F (#3760) 
* add missing H5PGET_ACTUAL_SELECTION_IO_MODE_F dll
 2023-10-23 19:02:16 -05:00
Scot Breitenfeld
da3b7ff945
Add h5pget_actual_selection_io_mode fortran wrapper (#3746) 
* added h5pget_actual_selection_io_mode_f test

* added tests for h5pget_actual_selection_io_mode_f

* fixed int_f type conversion
 2023-10-23 14:55:47 -05:00
Scot Breitenfeld
34f4569cdd
update stat arg for apple (#3726) 
* update stat arg for apple

* use H5_HAVE_DARWIN for Apple ifdef

* fix typo

* removed duplicate H5_ih_info_t

* added fortran async test to cmake
 2023-10-23 12:35:42 -07:00
Dana Robinson
e4fb67c84a
Clean Autotools files in parallel tests (#3744) 
Adds missing files to `make clean` for parallel, including Fortran.
 2023-10-22 18:45:22 -07:00
Glenn Song
2d551c9b57
Add -h and --help as flags in h5cc & h5fc (#3729) 
Adds these common help flags in addition to -help
 2023-10-20 11:28:10 -07:00
Scot Breitenfeld
5672fd8177
Attempt to quiet some warnings with cray compilers. (#3724) 2023-10-19 14:40:08 -07:00
Allen Byrne
65e1bd8ce9
Add NVidia compiler support and CI (#3686) 2023-10-18 12:44:42 -07:00