Commit Graph

19716 Commits

Author SHA1 Message Date
M. Scot Breitenfeld
92bebb782e fixed dependencies 2019-06-13 10:41:31 -05:00
M. Scot Breitenfeld
e5d1da0224 fixed invalid pointer 2019-06-13 10:31:14 -05:00
M. Scot Breitenfeld
c348d7d606 removed unregistering native vol 2019-06-13 09:56:50 -05:00
M. Scot Breitenfeld
46a62130fa fix for cycle dependency 2019-06-13 09:23:12 -05:00
Scot Breitenfeld
9a82fa66d4 Merge pull request #1708 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:H10621 to develop
* commit '0742c15fca95965ed4eb87c6d54f41bb07bd4526':
  makefile clean-up
  move the vol_info to an optional parameter
  added H5Pset_vol
  added vol connector
  added test for vol_connector
  removed H5VL constants
  removed VOLL NULL connector and replaced it with native VOL
  added connector_name test
  added missing files
  add tests
  added more tests
  added missing files
  Implemented VOL APIs and C constants, no tests
  Implemented VOL APIs and C constants, no tests
  initial API impl.
2019-06-12 16:06:21 -05:00
Larry Knox
7e929a9bec Merge pull request #1728 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:bugfix/HDFFV-9976-add-configuration-or-make-options to develop
* commit '6e1dc507240fba447c79827897b099e91b9dd5c1':
  Add release note for enable-tools and enable-tests options.
  Modified Makefile.ams for h5repack, h5watch and gif2h5 to allow disabling tests. Moved h5cc.in from tools/src/misc to src directory to always create h5cc whether or not tools are enabled. Added configuration status of tools and tests to libhdf5.settings.
  Add options to enable or disable building tools and tests.  The default is enabled for each.
2019-06-12 15:09:51 -05:00
Larry Knox
6e1dc50724 Add release note for enable-tools and enable-tests options. 2019-06-12 14:13:48 -05:00
Vailin Choi
8d72e5e3e0 Fix for HDFFV-10800 H5Ocopy failure:
The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format
version bounds array for fill value message, should be version 3 not 2.
2019-06-12 12:55:12 -05:00
Larry Knox
5385f032dd Modified Makefile.ams for h5repack, h5watch and gif2h5 to allow
disabling tests.
Moved h5cc.in from tools/src/misc to src directory to always create h5cc
whether or not tools are enabled.
Added configuration status of tools and tests to libhdf5.settings.
2019-06-12 10:21:41 -05:00
M. Scot Breitenfeld
0742c15fca makefile clean-up 2019-06-12 09:21:59 -05:00
Dana Robinson
bb5e7822f4 Fixed an error string typo 2019-06-11 14:39:39 -07:00
Dana Robinson
436250369a Merge pull request #1725 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5dump_memory_bug to develop
* commit '0cf52525d5b45cc7cf6f89267da76b46ffa75f90':
  H5A__free() was renamed to H5A__shared_free() and now requires attr->shared to not be NULL.
  Fixed a memory issue where unfreed shared attribute dataspace memory tripped an assert in our memory sanity checks.
  Fixed a memory issue where unfreed shared attribute dataspace memory tripped an assert in our memory sanity checks.
2019-06-11 16:37:13 -05:00
Dana Robinson
0cf52525d5 H5A__free() was renamed to H5A__shared_free() and now requires
attr->shared to not be NULL.
2019-06-11 14:14:13 -07:00
M. Scot Breitenfeld
893641990a move the vol_info to an optional parameter 2019-06-11 14:28:10 -05:00
Dana Robinson
3fd4f270fd Merge branch 'h5dump_memory_bug' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into h5dump_memory_bug 2019-06-11 11:03:04 -07:00
Dana Robinson
c4ee9ef7c0 Fixed a memory issue where unfreed shared attribute dataspace memory
tripped an assert in our memory sanity checks.

Fixes HDFFV-10774.
2019-06-11 10:59:41 -07:00
Dana Robinson
2bd041f878 Added H5Fdelete call and VOL support (but no VFD/native implementation). 2019-06-11 09:04:23 -07:00
Dana Robinson
5098894ffd Fixed a memory issue where unfreed shared attribute dataspace memory
tripped an assert in our memory sanity checks.

Fixes HDFFV-10774.
2019-06-11 04:09:27 -07:00
Dana Robinson
48b0ff7724 Merge pull request #1721 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:release_fixes to develop
* commit 'a668acfc6cb541cc6afa63f964af3d808d058883':
  Minor tweaks to the VOL function comments to bring them in line with the RM.
2019-06-06 14:37:07 -05:00
Dana Robinson
a668acfc6c Minor tweaks to the VOL function comments to bring them in line with the
RM.
2019-06-06 11:06:04 -07:00
Larry Knox
54a07f556c Add options to enable or disable building tools and tests. The default
is enabled for each.
2019-06-05 23:20:01 -05:00
Larry Knox
f6b15437dd Merge pull request #1720 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '931abe94244c94e106835250e2f723f634a61c8c':
  Move set (MAX_PROC_COUNT 8) back to HPC options files.
  Move check for MPI defined to enable parallel from options scripts in HPC to config/cmake/HDF5options.cmake.
2019-06-05 17:19:19 -05:00
Larry Knox
931abe9424 Move set (MAX_PROC_COUNT 8) back to HPC options files. 2019-06-05 16:44:10 -05:00
Larry Knox
c64bfbd8a0 Move check for MPI defined to enable parallel from options scripts in HPC to config/cmake/HDF5options.cmake. 2019-06-05 16:35:04 -05:00
Allen Byrne
d3a6a9ed8f Merge pull request #1715 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '1ecce0e9bbc07cb3eb6f6bc1fca9d42c9e9c8176':
  Fix minor issues
  Update macro
  Java formatting of args
2019-06-05 15:06:53 -05:00
Dana Robinson
b31a53bfcb Merge pull request #1719 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vipl to develop
* commit 'a18727bc77c90a9925cabbde8d8ec46c757c6254':
  Added a VOL initialization property list type.
2019-06-05 15:04:06 -05:00
Dana Robinson
cb82b6c222 Merge pull request #1718 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:release_fixes to develop
* commit '9557087c0ed7811301610155654bf58d6583e38c':
  Minor warning fixes: * Fixed an error return value in H5Aint.c (NULL --> FAIL) * Added H5VL_FILE_GET_FILENO to H5trace.c
2019-06-05 11:26:12 -05:00
Dana Robinson
a18727bc77 Added a VOL initialization property list type. 2019-06-05 04:34:36 -07:00
Dana Robinson
9557087c0e Minor warning fixes:
* Fixed an error return value in H5Aint.c (NULL --> FAIL)
* Added H5VL_FILE_GET_FILENO to H5trace.c
2019-06-05 04:32:08 -07:00
Vailin Choi
82f656aed0 Merge pull request #5 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm
* commit '66699f2c7d889e725ced0fba579621ef97726b41': (49 commits)
  Minor fixes/improvements for VDS performance improvement (HDFFV-10693).
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Added code that disallows unregistering the native VOL connector.
  Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
  Correct message command syntax
  Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack
  Avoid clearing error stack when calling H5Eget_msg()
  Reorder lines in HDF5config.cmake so that additions to end of $HPC-HDF5options scripts will take precedence.
  updated -E option
  remove -M option
  added -M HPC to ctest command
  fixed missing paralle test
  Adding cross-compilation for theta (ANL) and qsub (COBALT) batch controls.
  Add note about CMake and spaces in paths
  Putting ctest command in variable CMD did not work for skipping failing tests.
  Code improvement Description:     Fixed potential division by zero occurrences and changed an assert to     if statement. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
  Combine "collective group and dataset write" and "independent group and dataset read" tests into one test.  The second test is dependent on the file created by the first test, and will not pass when run by itself.
  Add final list of single testphdf5 tests
  Pull a test from default testphdf5
  ...
2019-06-04 15:44:08 -05:00
Neil Fortner
66699f2c7d Merge pull request #1717 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to develop
Complete rework of H5S__hyper_project_intersection. Addresses VDS performance issues raised in HDFFV-10693.

* commit 'd3e242eba1ba98726ed64b14e75f6adee724bea7':
  Minor fixes/improvements for VDS performance improvement (HDFFV-10693).
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
2019-06-04 11:06:23 -05:00
Binh-Minh Ribler
c9ae1cf557 Merge pull request #1693 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to develop
* commit '8a57a683391eed79aca80a7325ef152bb76ad0a6':
  Code improvement Description:     Fixed potential division by zero occurrences and changed an assert to     if statement. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
2019-06-03 13:16:02 -05:00
Neil Fortner
d3e242eba1 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop 2019-06-03 12:48:02 -05:00
Neil Fortner
45daa3d168 Minor fixes/improvements for VDS performance improvement (HDFFV-10693). 2019-06-03 12:42:22 -05:00
Allen Byrne
1ecce0e9bb Fix minor issues 2019-06-03 10:45:20 -05:00
Neil Fortner
988d6d0844 Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal. 2019-05-31 19:32:35 -05:00
Neil Fortner
35a8a549f6 Refactor H5S__hyper_project_intersection to operate directly on span
trees, improving performance and removing the conditionn that the
extents be equal.
2019-05-31 19:26:56 -05:00
Allen Byrne
94d3aa7166 Update macro 2019-05-31 12:33:50 -05:00
Allen Byrne
748da4d3e2 Java formatting of args 2019-05-30 15:56:02 -05:00
Dana Robinson
4af633d1c4 Merge pull request #1714 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5VLunregister_native to develop
* commit '0afb76228e16e63d72a7dbacdbb894d34fe29722':
  Added code that disallows unregistering the native VOL connector.
2019-05-24 16:04:47 -05:00
Dana Robinson
0afb76228e Added code that disallows unregistering the native VOL connector. 2019-05-24 13:39:45 -07:00
Dana Robinson
d5a8b2a80c Split VOL connector routines into separate headers:
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things

Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
2019-05-24 02:22:08 -07:00
Jerome Soumagne
e1879a23ae Merge pull request #1706 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_getloc to develop
* commit '982ed75720d7dece10623868cda22c46908baebe':
  Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
2019-05-23 13:51:56 -05:00
Jerome Soumagne
982ed75720 Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
Implement native H5VL_OBJECT_GET_NAME by addr
2019-05-23 13:48:04 -05:00
M. Scot Breitenfeld
2c79243111 added H5Pset_vol 2019-05-22 14:09:17 -05:00
Jordan Henderson
f37a17a6ce Merge pull request #1709 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit '802b2927254b1de163589b1e4eaced47ee81ad07':
  Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack
  Avoid clearing error stack when calling H5Eget_msg()
2019-05-21 09:51:36 -05:00
Allen Byrne
2717a0da8b Merge pull request #1710 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0b086c3db2c6cd376b7bffb3236df1ef158ae80d':
  Correct message command syntax
  Add note about CMake and spaces in paths
2019-05-19 10:59:14 -05:00
Allen Byrne
0b086c3db2 Correct message command syntax 2019-05-17 15:14:20 -05:00
Jordan Henderson
802b292725 Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack 2019-05-17 10:49:27 -05:00
Jordan Henderson
04f171d0cb Avoid clearing error stack when calling H5Eget_msg() 2019-05-17 10:48:04 -05:00