** config/depend1.in
We don't regenerate the Dependencies files if we're compiling in the
source tree because `gcc -MM' doesn't output enough information to
make the result usable when compiling outside the source tree.
** src/H5config.h.in
Regenerated to include HAVE_LIBMPI and HAVE_LIBMPIO because of recent
changes to configure.in
had to change some of the functions in the h5findshd.c file since we didn't
have the globals anymore. these changes also affected the h5toh5.c file.
passes all tests on unix
New feature
configure.in:
When just --enable-parallel is used, will try to test if MPI and MPI-IO
library codes are linkable. If not, try -lmpi and -lmpio as the most
commonly used library names for them.
Also, set default value for RUNPARALLEL if not set.
Now, for systems, like SGI Crays where there are the system supported
MPI libraries, "./configure --enable-parallel" would configure
correctly.
Configure:
Derived from configure.in via autoconf.
Platform tested:
SGI O2K.
** bin/rpmsync
** config/depend1.in
Tweaks for versions of `make' that can't search directories.
** examples/Dependencies
** src/Dependencies
** test/Dependencies
** testpar/Dependencies
** tools/Dependencies
Regenerated all these with more complete path names.
so i moved the dumper stuff out to the libary. Had to change some functions
in h5findshd so they would stop using globals that shouldn't be defined in the
lib. I will remove the globals next. also the h5findshd.c has an extra member
to the struct for that objects in the table so i added that into the appropriate place.
the dumper is working ok now but the h5toh4 is still broken.
----------------------
./MANIFEST
./configure.in
./configure [REGENERATED]
Added more checking for `make' features.
./Makefile.in
./doc/Makefile.in
./doc/html/Makefile.in
./doc/html/Tutor/Makefile.in
./examples/Makefile.in
./pablo/Makefile.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
./config/commence.in
./config/conclude.in
./config/depend.in [REMOVED]
./config/depend1.in [NEW]
./config/depend2.in [NEW]
./config/depend3.in [NEW]
./config/depend4.in [NEW]
./config/dependN.in [NEW]
The directory search stuff was moved into commence.in, thereby
shortening the Makefile.in prologues.
./doc/html/Dependencies [NEW]
./doc/html/Tutor/Dependencies [NEW]
./examples/Dependencies [NEW]
./src/Dependencies [NEW]
./test/Dependencies [NEW]
./testpar/Dependencies [NEW]
./tools/Dependencies [NEW]
The `.distdep' files were all renamed to `Dependencies' to make them
more obvious. They are required (but may be empty) in every directory
that has a Makefile.in that ends with @CONCLUDE@ (you'll get an
obvious error from make if you forgot to create one).
./bin/trace
./src/H5.c
Added H5E_major_t and H5E_minor_t although tracing only prints the
integer value.
./src/H5E.c
./src/H5Epublic.h
Added tracing information.
./src/H5FDcore.c
./src/H5FDfamily.c
./src/H5FDgass.c
./src/H5FDmpio.c
./src/H5FDsec2.c
./src/H5FDstdio.c
Fixed places where FUNC_LEAVE() evaluated it's argument more than
once.
Added tracing information.
Wrapped long lines.
./config/gnu-flags
Fixed a syntax error when we don't have a gnu compiler.
Bug fix.
Description:
If the H4DUMP (hdp) is not executable for some reasons (e.g., not
in $PATH), it produced zero sized files. The test script did not
detect the abnormality but compared the zero sized files the same
and concluded the test passed.
Solution:
Test if H4DUMP can produce valid output. If not, print warning
messages. Also check the size of output files to make sure they
are reasonably valid.
Platform tested:
Linux.
Updated.
configure.in:
Removed the test for -lxnet in the GASS-driver part. There is
no need for it and it does not exist in other machines like IRIX64.
configure:
Deriverd from configure.in.
----------------------
./configure.in
./src/H5config.h.in [REGENERATED]
The /usr/ncsa/{include,lib} directories are only added if they
actually exist. This fixes a warning on some systems.
Checks for the <pdb.h> header file and also for either the PDB or Silo
library, and if found prepares to compile the pdb2hdf program.
./config/distdep
Relative path names for include files are changed to base names since
the makefile contains the logic for searching and since it's likely
that building the .distdep files happed from a location other than
where they would be used in the file system.
./config/conclude.in
Fixed shell errors when `for' loops iterate over nothing for the
`uninstall' target.
./src/H5D.c
./src/H5Oefl.c
File names for the external files are added to the heap when the
dataset is created instead of when the object header is written. This
fixes a rare infinite recursion bug.
./src/H5FD.c
./src/H5FDpublic.h
Optimization to the free list causes H5FD_alloc() usage to go from >10
seconds to <0.4 second for one example (converting a 30MB equation of
state file from PDB to HDF5 format). The optimization is to simply
keep track of the largest item in the free list and not search the
free list when the largest item is not big enough to satisfy the
request.
./src/H5FDcore.c
./src/H5FDcore.h
./test/h5test.c
If the `backing_store' property is true then a flush causes the entire
contents of memory to be written to the specified file. This is in
preparation for the ASCI/red optimizations and is currently tested by
the pdb2hdf `--cached' switch.
./src/H5Odtypes.c
Wrapped three long lines.
./tools/Makefile.in
./tools/pdb2hdf.c [NEW]
A PDB-to-HDF5 translator. It only translates meta data -- the
resulting HDF5 points into the PDB file for the raw data.
