Commit Graph

4000 Commits

Author SHA1 Message Date
Dana Robinson
4dfde6bac7
Fix file names in tfile.c (#3743)
Some tests in tfile.c use h5_fileaccess to get a VFD-dependent file
name but use the scheme from testhdf5, reusing the FILE1 and FILE8
names. This leads to files like test1.h5.h5 which are unintended
and not cleaned up.

This changes the filename scheme for a few tests to work with h5test,
resulting in more informative names and allowing the files to
be cleaned up at the end of the test. The test files have also
been added to the `make clean` target for the Autotools.
2023-10-21 19:08:12 -05:00
Dana Robinson
4b2d2eccdd
Clean the flushrefresh test dir on Autotools (#3741)
The flushrefresh_test directory was not being cleaned up w/
`make clean` under the Autotools
2023-10-21 11:44:33 -07:00
Dana Robinson
e01ea706e2
Add missing test files to distclean target (#3734)
Cleans up new files in Autotools `make distclean` in the test directory
2023-10-20 12:46:26 -07:00
Neil Fortner
630d6e27c9
Add new API function H5Pget_actual_select_io_mode() (#2974)
This function allows the user to determine if the library performed selection I/O, vector I/O, or scalar (legacy) I/O during the last HDF5 operation performed with the provided DXPL. Expanded existing tests to check this functionality.
2023-10-20 10:32:17 -07:00
jhendersonHDF
11f3804c48
Fix CMake VOL passthrough tests by copying files to correct directory (#3721) 2023-10-19 14:59:18 -07:00
jhendersonHDF
ebd3744407
Work around Theta system issue failure in links test (#3710)
When the Subfiling VFD is enabled, the links test may
try to initialize the Subfiling VFD and call MPI_Init_thread.
On Theta, this appears to have an issue that will cause
the links test to fail. Reworked the test to check for
the same conditions in a more roundabout way that doesn't
involved initializing the Subfiling VFD
2023-10-18 14:47:13 -07:00
H. Joe Lee
5e310254e2
Correct ld in format strings in cmpd_dset.c (#3697)
Removes clang warnings
2023-10-18 07:59:01 -07:00
Dana Robinson
2a3b511e96
Restore floating-point suffixes in tests (#3698)
A prior commit removed too many F suffixes. This restores the suffixes
for float variables.
2023-10-17 12:22:27 -07:00
Dana Robinson
3523d4ba66
Fix unused variable in tselect.c (#3701) 2023-10-17 12:14:24 -07:00
Dana Robinson
e158217012
Fix a possible NULL pointer dereference in tests (#3676)
The dtypes test could dereference a NULL pointer if a strdup call
failed.
2023-10-16 08:09:48 -05:00
vchoi-hdfgroup
6f56d06f6a
Add more tests for selection I/O. (#3528) 2023-10-10 10:13:00 -05:00
Allen Byrne
7631015ea4
Use real URLs and updated names for plugins (#3651)
* synchronize TGZ naming convention/usage
2023-10-10 09:30:19 -05:00
jhendersonHDF
34fcb9c5a4
Fix several spelling/grammar issues (#3621) 2023-10-03 09:01:28 -07:00
H. Joe Lee
4261552068
Fix Intel oneAPI icc warning (#3619) 2023-09-29 17:50:04 -07:00
Allen Byrne
1529ec0ab3
Develop tools move (#3580)
Reorganizes the tools files to support the VOL tests
2023-09-26 13:46:55 -07:00
Scot Breitenfeld
a87ca572fe
Replaces HDgetenv with getenv (#3599) 2023-09-26 13:11:22 -07:00
Dana Robinson
58f3d6664e
Use HDoff_t with lseek consistently (#3600)
lseek on Windows uses __int64 for both the offset and return type
instead of off_t like most POSIX systems. This changes ensures we
use HDoff_t (which is typdef'd correctly on Windows) w/ lseek.
2023-09-26 11:38:07 -07:00
H. Joe Lee
9d41d478ef
Fix typo (givin->given) in test/testframe.c. (#3567) 2023-09-22 08:45:10 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Dana Robinson
aa849f07e3
Remove HD prefix from math functions (#3538) 2023-09-14 10:54:00 -07:00
Scot Breitenfeld
75ba9ec7a6
removed C_INT32_T from Fortran APIs (#3537) 2023-09-14 07:51:39 -07:00
Scot Breitenfeld
117d579c32
Consistent initialization of hid_t in the tests (#3521) 2023-09-08 18:06:23 -05:00
Dana Robinson
9208697960
Convert hbool_t --> bool in test (#3494) 2023-09-05 13:11:52 -07:00
Scot Breitenfeld
896270cc6b
Removed all the ranks printing out testing information (#3457) 2023-08-31 21:34:57 -07:00
jhendersonHDF
8ef463e9bd
Fix an issue with use of uninitialized memory in trefer_deprec.c test (#3422) 2023-08-24 08:55:35 -07:00
vchoi-hdfgroup
291b2f7ae4
Implementation of the mpio driver with selection I/O. (#3222)
* This changes the default selection I/O to on for MPIO.
2023-08-06 22:12:07 -05:00
vchoi-hdfgroup
ede4987b63
Fix for the bug exposed from running test/set_extent.c when selection… (#3319)
* Fix for the bug exposed from running test/set_extent.c when selection I/O is enabled.
This is a fix from Neil.
The test/set_extent.c is modified to test for selection I/O enabled.
2023-08-04 16:36:50 -05:00
Sean McBride
07df0d252c
Fixes the last of the -Wextra-semi-stmt warnings (#3326)
* Fixed extra semi warning by adjusting alternative macro definitions

* Find-replace H5E_END_TRY; -> H5E_END_TRY

* Made H5Epush_goto a do-while loop, fixed indentation

* Made GOTOERROR and ERRMSG do-while loops

* Made Hgoto_error and Hgoto_done  do-while loops

* Made vrfy_cint_type and vrfy_ctype  do-while loops

* Made TEST_TYPE_CONTIG and others do-while loops

* Removed extraneous semi-colons

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-08-02 17:46:26 -05:00
Larry Knox
0d3617135b
Update files to skip list and ignore_words_list (#3321)
* Update files to skip list and ignore_words_list for codespell to not
check files generated by autotools.  Autotools generate misspellings
that can't be fixed in HDF5 code.
2023-08-02 08:39:56 -05:00
Allen Byrne
56451503c5
Fix loading plugin fails with missing directory GH issue #3248 (#3315) 2023-08-01 23:16:11 -05:00
jhendersonHDF
a78863a82c
Fix incorrect error check in H5Ofill.c for undefined fill values (#3312) 2023-08-01 23:14:02 -05:00
Sean McBride
553e1cd311
Another round of fixing -Wextra-semi-stmt warnings (#3264)
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-24 16:18:04 -05:00
Sean McBride
1903c4b1b0
Fixed more warnings about extra semicolons (#3249)
* Require semi-colon after H5_CHECK_OVERFLOW calls



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-18 10:35:05 -05:00
jhendersonHDF
aab497a631
Fix some warnings in developer builds (#3247)
* Fix some warnings in developer builds

* Switch approach to Winline flag
2023-07-18 04:27:07 -07:00
Jan-Willem Blokland
305ac88865
ROS3: (feature) Temporary security credentials (#3030)
- Implemented support for AWS temporary security credentials.
  For this kind of credentials also a session/security token
  should be included in the request by adding the
  x-amz-security-token header.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-14 15:15:11 -05:00
Larry Knox
145e962bce
Replace support.hdfgroup.org URLs for alternative COPYING file (#3228)
* Replace support.hdfgroup.org URLs for alternative COPYING file
locations in copyright headers with https://www.hdfgroup.org/licenses.
Replace  support.hdfgroup.org URL for alternative COPYING_LBNL_HDF5
with github URL.
Tweak chkcopyright script for change from UICOPYRIGHTSTR to
THGCOPYRIGHTSTR.
2023-07-12 17:33:58 -05:00
Dana Robinson
39e6bf48c9
Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
fd56a593b7
Remove HD from C std lib file ops (#3206)
* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite
2023-06-29 08:19:31 -07:00
Dana Robinson
8aef67f0ae
Remove HD from strto* calls (#3204)
* HDstrtod
* HDstrtol
* HDstrtoll
* HDstrtoul
* HDstrtoull
* HDstrtoumax
2023-06-29 08:18:49 -07:00
Dana Robinson
9f430d15b0
Rename HDexit() and related to exit(), etc. (#3202)
* HDatexit
* HDexit
* HD_exit
2023-06-29 08:18:01 -07:00
Dana Robinson
a5f1fb01b9
Remove some "Programmer" comments (#3209)
These are meaningless noise.

Removes the "Programmer" lines on comment start lines:

    /* Programmer: John Smith

These complicate my sed script that will rip out the rest of
the comments.
2023-06-29 06:33:49 -07:00
Dana Robinson
dd39b54c95
Rename HDato*() to ato*() (#3201) 2023-06-29 06:33:09 -07:00
Dana Robinson
a90bdbbcfc
Remove HD from protected POSIX calls (#3203)
These calls are non-C99 but protected by ifdefs and have no Windows
equivalents:
* HDalarm
* HDasprintf
* HDclock_gettime
* HDfcntl
* HDgethostname
* HDgetrusage
* HDsymlink
2023-06-29 06:32:40 -07:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson
605cea4af6
Remove HD from HDposix_memalign() (#3196)
The posix_memalign call is only used in the direct VFD, which can only
be built if posix_memalign() is available.
2023-06-28 13:03:45 -07:00
Dana Robinson
187ea8a9ae
Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
Dana Robinson
7a44581a84
Rename HDassert() to assert() (#3191)
* Change HDassert to assert

* Fix bin/make_err
2023-06-28 07:31:56 -07:00
Dana Robinson
622fcbd138
Rename HDpipe() to pipe() (#3192)
Pipe is POSIX but implemented in Microsoft's CRT
2023-06-28 07:31:08 -07:00
Dana Robinson
6df077953e
Rename HDqsort() to qsort() (#3193)
* Rename HDqsort() to qsort()

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-06-28 07:30:54 -07:00