Commit Graph

3315 Commits

Author SHA1 Message Date
Quincey Koziol
833a4f73fd Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-12-13 17:32:39 -06:00
Quincey Koziol
247a6afb7e Fix plugin code from referencing invalid key ID value, and also switch from
strtok() to strtok_r() to avoid possible interference with / to application
use of strtok().
2018-12-13 17:31:00 -06:00
Jacob Smith
0a4834c264 Reformat to be more consistent with existing code.
Fix a few typos.
2018-12-13 14:02:29 -06:00
Jacob Smith
943b7f9c02 Merge branch 'develop' into dset_ohdr_minimize 2018-12-13 10:27:27 -06:00
Jordan Henderson
76c0d8c434 Add test for H5Aget_info(_by_name/_by_idx) NULL info pointer 2018-12-12 18:30:34 -06:00
Jacob Smith
ad6de59e4c Merge branch 'develop' into dset_ohdr_minimize 2018-12-12 17:34:13 -06:00
Jacob Smith
911b8e8fc2 Merge branch 'dset_ohdr_minimize' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize
Incorporate a few housekeeping changes and one fix.
2018-12-12 17:27:27 -06:00
Jacob Smith
ea73325250 Merge branch 'develop' into dset_ohdr_minimize 2018-12-12 17:26:08 -06:00
Jacob Smith
c81e310214 Fix typo.
Fix CHECK of wrong ID (dset[2|3]_id).
2018-12-12 14:03:56 -06:00
hdftest
afdf3094cc Merge pull request #1367 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'deb7d2fb9714acc8222815328f71b0aae7e74275':
  Use version 2 functions in test file to address compile errors for --with-default-api-version=v16 option.
2018-12-12 11:30:05 -06:00
Larry Knox
deb7d2fb97 Use version 2 functions in test file to address compile errors for
--with-default-api-version=v16 option.
2018-12-12 06:53:26 -06:00
Jacob Smith
496de6922f change test file name and apply 'h5_fixname' to it 2018-12-11 17:45:12 -06:00
Dana Robinson
e21c1cf7c6 Removed H5I_REFERENCE from the library. It has always been unused
and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
2018-12-08 08:14:05 -08:00
Allen Byrne
ce625a617e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '4643860aa940fb52da251f7023ec2e48d7d10f34':
  HDFFV-10635: Some minor changes to the test case and the comments in the library.
  HDFFV-10635: add a test case.
  HDFFV-10635: Allowing to write the same variable-length element more than once.
2018-12-07 15:57:56 -06:00
Ray Lu
4643860aa9 Merge pull request #1348 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10635-hdf5-library-segmentation-fault to develop
* commit '3e8599591504c95d8a97100b9546174f6132dc97':
  HDFFV-10635: Some minor changes to the test case and the comments in the library.
  HDFFV-10635: add a test case.
  HDFFV-10635: Allowing to write the same variable-length element more than once.
2018-12-07 14:58:43 -06:00
Songyu Lu
3e85995915 HDFFV-10635: Some minor changes to the test case and the comments in the library. 2018-12-06 17:36:34 -06:00
Allen Byrne
2998dbfc70 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'f2da47f732ded55837f6d008af46d0c448bec1f1':
  Update to new callbacks in H5VL_class_t.
2018-12-06 08:14:34 -06:00
Songyu Lu
19a94503f3 HDFFV-10635: add a test case. 2018-12-05 16:48:47 -06:00
Jacob Smith
f1825f0d26 Sidestep and hide&flag minor issues causing test failures. 2018-12-05 16:39:39 -06:00
Quincey Koziol
592a223455 Update to new callbacks in H5VL_class_t. 2018-12-05 15:09:32 -06:00
Allen Byrne
307749cc71 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '55e87e5b86aacbb37c57614cd2e869541291caad': (51 commits)
  Correct Windows build.
  Refactor allocating & releasing pass through wrapper objects.
  Fix typo
  Remove duplicated comment.
  Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector.
  Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value.
  Correct "make check-vol" regression test target.
  Switch H5VL_class_value_t from enum to unsigned integer
  Add support for "make check-vol", along with a few minor cleanups, etc.
  Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors.   Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
  Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory.
  Add pass-through VOL connector
  Update API tracing info for VOL functions and regenerate trace macros for VOL API calls.
  Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
  Add using FAPL from h5_fileaccess() to more tests.
  Remove unused test for unimplemented routine.
  Switch loc_params to VOL callbacks to pass struct by pointer instead of by value.
  Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object.
  Revert some of the changes to support the original property list value of metadata read attempts.
  Add VOL connector info to the flie access property list returned from H5Fget_access_plist().  Also, other misc. cleanups, etc.
  ...
2018-12-05 14:25:58 -06:00
Allen Byrne
e3e24a2989 HDFFV-10632 - split stderr and stdout in cmake 2018-12-03 09:35:59 -06:00
Quincey Koziol
50c4095c8c Remove duplicated comment. 2018-11-30 14:18:14 -06:00
Quincey Koziol
047269139f Add a couple of missing prototypes for static routines, along with updating
a comment from VOL plugin -> connector.
2018-11-30 14:12:32 -06:00
Quincey Koziol
8c606f586e Correct "make check-vol" regression test target. 2018-11-28 22:54:46 -06:00
Quincey Koziol
f3ad03a538 Switch H5VL_class_value_t from enum to unsigned integer 2018-11-28 22:21:45 -06:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
Quincey Koziol
6eabeabdaa Refactor infrastructure for setting FAPL information from environment
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors.   Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
2018-11-28 17:38:03 -06:00
Quincey Koziol
3217ffa1ac Add using FAPL from h5_fileaccess() to more tests. 2018-11-22 01:21:50 -06:00
Quincey Koziol
340b7a4fb8 Remove unused test for unimplemented routine. 2018-11-22 01:08:47 -06:00
Jacob Smith
1fed1a7be7 Incorporate minimized dset ohdr tests into extant suite. 2018-11-19 14:08:31 -06:00
Quincey Koziol
6c99961bb2 Revert some of the changes to support the original property list value of
metadata read attempts.
2018-11-18 00:57:09 -06:00
Quincey Koziol
59c28780d3 Add VOL connector info to the flie access property list returned from
H5Fget_access_plist().  Also, other misc. cleanups, etc.
2018-11-18 00:38:29 -06:00
Quincey Koziol
140f72b748 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-07 15:20:28 -06:00
Allen Byrne
79903575e6 HDFFV-10605 Only test plugins if SHARED enabled 2018-11-06 15:45:58 -06:00
Quincey Koziol
1daa7b830a Switch driver | plugin => connector. 2018-11-04 01:27:23 -05:00
Quincey Koziol
deb75622ca Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-04 00:25:36 -05:00
Vailin Choi
51076d4061 Fixed exit() to HDexit() in use_append_chunk.c and use_append_mchunks.c 2018-11-01 15:00:40 -05:00
Vailin Choi
4f62c084f1 Fixed fprintf to HDfprintf in the following routines:
1) read_uc_file() in use_common.c
2) main() of use_append_chunk.c and use_append_mchunks.c
2018-11-01 12:03:34 -05:00
Quincey Koziol
a5cc4e272b Refactor and standardize the link VOL callbacks. Also fix error stack for
testing.
2018-11-01 11:22:54 -05:00
Quincey Koziol
ef7c458d73 Update for change in error stack when opening a dataset. 2018-10-31 18:41:19 -05:00
Quincey Koziol
d66d5e01c0 Refactor and standarize file object callbacks, including some fixes on the
dataset callbacks.
2018-10-31 18:18:45 -05:00
Vailin Choi
d1d2cf776d Fix for HDFFV-10554 use_append_chunks in swmr use case test failure
Fix the timing issue of the test by moving the open/close of the test file for the writer to
use_append_chunk.c and use_append_mchunks.c.
2018-10-30 16:53:09 -05:00
Quincey Koziol
8ee361f185 Move all callback-related routines into the callback source file, standardizing
their coding style
2018-10-28 01:31:28 -05:00
Quincey Koziol
6e84fd8327 Remove virtual dataset refresh code's direct use of native VOL plugin's ID. 2018-10-27 01:33:07 -05:00
Quincey Koziol
171deaa588 Checkpoint progress on stacking VOL plugins - all standalone regression tests
in the 'test' directory appear to be working.
2018-10-26 16:09:06 -05:00
Quincey Koziol
305997501d Updates after merging changes from develop. 2018-10-26 00:54:29 -05:00
Quincey Koziol
4a32895724 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-10-25 18:32:13 -05:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins.
modified:   test/dsets.c
2018-10-24 23:52:47 -05:00
Dana Robinson
46c5b059f1 Split H5VLnative.h into public and private files and updated 2018-10-20 13:06:37 -07:00
Dana Robinson
2d6d5cad0c Updates to the VOL ID and object API calls.
This brings the H5VL code in line with the H5I code regarding
naming, parameter order, etc.

Several public API calls were affected by this change.

These changed names to reflect their use with VOL drivers:
    H5VLregister()          -->     H5VLregister_driver()
    H5VLregister_by_name()  -->     H5VLregister_driver_by_name()
    H5VLunregister()        -->     H5VLunregister_driver()
    H5VLis_registered()     -->     H5VLis_driver_registered()

This call was renamed to match H5Iregister(). The order of the first
two parameters also reversed and the object pointer is now const.
    H5VLobject_register()   -->     H5VLregister()
2018-10-17 02:06:28 -07:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
8d7bdb7041 CMake changes for SKIPPED and flush tests 2018-09-24 14:38:46 -05:00
Dana Robinson
265652fe54 Normalization with vol_integration (property lists, file drivers,
other misc).
2018-09-21 12:12:05 -07:00
Jacob Smith
ff7d250093 Remove unused/redundant external file link test 2018-09-20 15:25:10 -05:00
Jacob Smith
9dec62e0ae Modify MTIME size behavior to be closer to expectations (we hope).
Minor code cleanup.
2018-09-20 15:15:49 -05:00
Jacob Smith
5f8f703dec Continued progress in implementing tests. 2018-09-20 14:16:26 -05:00
Dana Robinson
67a126c7ba Normalization with vol_integration (test code and H5Xtest.c) 2018-09-20 10:40:51 -07:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Jacob Smith
e1f3a10c52 Make questionable tests fail with TODOs 2018-09-14 15:24:00 -05:00
Jacob Smith
14c044f1b1 Change to use internal routines to get dcpl minimize setting.
Fix external file/link problem:
    Include H5Fpkg.h to access file private variables directly.
2018-09-14 15:10:01 -05:00
Jacob Smith
6af06e74be Add modtime dataset to explicitly not track 2018-09-14 13:55:56 -05:00
Jacob Smith
1e3efbcf52 Refactor file- and dataset-creation code for easier reading.
Add modification message test logic.
Minor formatting tweaks.
2018-09-14 13:34:34 -05:00
Jacob Smith
dbf6afee39 Remove redundant code and refactor 2018-09-12 15:40:26 -05:00
Jacob Smith
5beeb64c29 Add presumptive test for external links. 2018-09-12 15:38:32 -05:00
Jacob Smith
dde5666f42 Add additional tests (or placeholders for same).
Tests use h5_fixname().
Small changes.
2018-09-12 14:06:55 -05:00
Jacob Smith
7ef8d1d848 Add new test file 2018-09-11 16:45:33 -05:00
Jacob Smith
602dd3ac15 Stash work on object header reduction code and tests.
CMake stuff is not verified.
2018-09-11 16:37:14 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Vailin Choi
ad317226ea Fix for HDFFV-9277: update the ainfo message after removing an attribute. 2018-07-20 11:21:50 -05:00
Larry Knox
64d8a67943 Merge pull request #1143 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '3c6654921000a8659276f1fcb32dd0ada1353558':
  Apply Cygwin pathches from Marco Atzeri. Commit Joe Lee's typo corrections for src/H5MF.c.
2018-07-18 17:15:42 -05:00
Larry Knox
3c66549210 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2018-07-18 17:06:59 -05:00
Larry Knox
892252106a Apply Cygwin pathches from Marco Atzeri.
Commit Joe Lee's typo corrections for src/H5MF.c.
2018-07-18 17:01:53 -05:00
Allen Byrne
e5156823bd TRILABS-137 Convert tcheck_version script to cmake tests 2018-07-18 10:42:14 -05:00
Allen Byrne
47780cb4e0 TRILAB-31 Working locally 2018-07-16 13:01:53 -05:00
Larry Knox
0f6d0803ef Merge pull request #1128 in HDFFV/hdf5 from HDFFV-10525-typo-in-vds.c to develop
* commit '863148d1fe0b6949708698ad9277dbdba8129e0c':
  fixed typo.
2018-07-15 23:35:54 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
Larry Knox
08a8202eda Vailin's fix for H5open fail when file doesn't have write permissions
for user in test_misc33().  The test file can be
opened read-only because the test doesn't write to it.
2018-07-12 14:31:02 -05:00
Hyo-Kyung Lee
863148d1fe fixed typo. 2018-07-10 18:13:44 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
M. Scot Breitenfeld
57f64b92d1 Merge branch 'develop' into hdf5_1_10.sync 2018-06-14 09:17:06 -05:00
Dana Robinson
91089de53f Normalization with vol_integration branch. 2018-06-06 21:34:11 -07:00
M. Scot Breitenfeld
f484649347 Merge branch 'develop' into hdf5_1_10.sync 2018-06-04 14:41:12 -05:00
Allen Byrne
f5b0b1c607 Fix usage of compression lib in shared tests 2018-06-01 10:09:53 -05:00
Dana Robinson
dec2f588ac Merge pull request #1043 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5do_direct_chunk_hl_to_src to develop
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
  Updated commenting in the H5DO compat test.
  Stripped out most of the duplicated functionality in the H5DO compat test.
  * Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
  * Fixed the error tests * Moved common functionality into helper functions
  Normalize with trunk prior to update merge
  Fixed a warning.
  Finished move of H5DOread/write_chunk calls to H5D.
  First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to   direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform   and renamed to direct_write_perf. * Updated autotools and CMake files.
2018-05-31 18:14:24 -05:00
Vailin Choi
796dc16e34 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'e8ece625f223032db0d26cfffafc045e4ccdf37d':
  Normalize with vol_integration.
2018-05-31 11:50:24 -05:00
Vailin Choi
18fe60ae10 (1) Made the change according to the pull request feedback.
(2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
2018-05-31 11:45:20 -05:00
Dana Robinson
384a1ec709 Normalize with vol_integration. 2018-05-29 14:06:01 -07:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
M. Scot Breitenfeld
4ddd7704b6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-22 11:48:44 -05:00
Allen Byrne
73efe72e0d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '73d7f7e7d37b869ce9c39cc8e648ef50d563fc93':
  Updated the threadsafety test to use error macros instead of asserts.
2018-05-21 09:11:39 -05:00
Vailin Choi
4df595946c Fix for HDFFV-10469: set to latest format for virtual layout encoding. 2018-05-17 11:51:34 -05:00
Dana Robinson
0e584c7af2 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-05-14 17:45:23 -07:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Dana Robinson
2c3b598158 Updated the threadsafety test to use error macros instead
of asserts.
2018-05-14 00:44:02 -07:00
M. Scot Breitenfeld
88e0c3e748 Merge branch 'develop' into hdf5_1_10.sync 2018-05-10 09:06:35 -05:00
M. Scot Breitenfeld
278fdfcbdb temporary fix for HDFFV-10469 2018-05-09 16:26:09 -05:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
f1a668a3b5 Correct COMPILE defs usage 2018-05-09 08:53:25 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
Dana Robinson
ac035bf367 * Fixed the error tests
* Moved common functionality into helper functions
2018-05-02 10:11:49 -07:00
Dana Robinson
64e13ca220 Merge branch 'develop' into h5do_direct_chunk_hl_to_src 2018-04-30 15:22:09 -07:00
Allen Byrne
fde2d1fe4a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '1f8cb03e11a46f853881f45dac18eff2dd68401e':
  Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files.  (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
  Further minor cleanups
  Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
2018-04-30 11:05:26 -05:00
Dana Robinson
09b1106e39 First stage of moving H5DOread/write_chunk() to src/ and making
them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
  direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
  and renamed to direct_write_perf.
* Updated autotools and CMake files.
2018-04-30 07:52:07 -07:00
Quincey Koziol
4411bc27ac Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:05:18 -05:00
Quincey Koziol
01f196b31a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:04:21 -05:00
Quincey Koziol
83e2ea681d Fix errors in Makefile.am files that cause "make check" to repeat test, even
when there are no changes to source files.  (Also add a ggenerated script
to the list of files cleaned up on 'make distclean')
2018-04-28 21:38:49 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
df83d78134 HDFFV-10444 fix so numbers and merge java test changes 2018-04-10 10:52:18 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
38cccb23ba Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58':
  Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
  Minor warning cleanup while working on VOL issues.
2018-04-09 07:14:53 -05:00
Allen Byrne
5e943e85e2 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '048ae59d2970dd21810577c999f756c028b6faaf':
  Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
  Update java error stack tests
  Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
  Add comment for the file flush when the file low / high bounds are changed after a file is open.
  Expanded comments abuot H5CX_t fields.
  Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
  Add comments for internal structs.
  Remove redundant 'is_collective' parameter from H5CX_set_loc.
  Correct typo in comment.
  Revert some tangential code cleanups.
  Add API context source files to CMake configuration file.
  Corrections for parallel I/O & tests.
  Update handling of reporting for breaking collective I/O when the default DXPL is used.
  Update encoded DXPLs to reflect changes in properties.
  Correct typo for error checking malloc return value.
  Refactor H5CX code to reduce duplication.
  Cleanup API context function usage.
  Add API context interface and use it throughout the library.
2018-04-06 09:21:06 -05:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Allen Byrne
f6a5236e43 Use var instead of absolute number 2018-04-05 08:16:13 -05:00
Quincey Koziol
c135db3365 Update encoded DXPLs to reflect changes in properties. 2018-03-20 13:52:04 -05:00
Allen Byrne
e158ec4d1f Merge mem leak fix from develop 2018-03-20 09:17:33 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
c31460c1b7 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 2018-03-18 18:38:21 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Allen Byrne
a32178ba94 Fix memory leak simply by capturing allocation in var 2018-03-16 09:03:08 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Larry Knox
f30873136b Merge pull request #943 in HDFFV/hdf5 from develop to hdf5_1_10
* commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e':
  Rework new tests into one macro
  Added a "won't fix" RELEASE.txt entry for HDFFV-10356.
  Fix CMake test names
  Fixed typo
  Add release note for HDFFFV-10397.
  Added a fix for HDFFV-10358.
  Fixed documentation Description:     - Updated the description of copy constructor for clarification.     - Removed unnecessary comments. Platforms tested:     Linux/64 (jelly)
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-13 13:04:03 -05:00
Vailin Choi
a8afb3ab3b Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1':
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-12 18:00:05 -05:00
M. Scot Breitenfeld
48eaac2029 Merge branch 'develop' into hdf5_1_10_merge 2018-03-12 12:07:51 -05:00
Binh-Minh Ribler
0684235b36 Merge pull request #935 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr:develop to develop
Notes for gen_bounds.c

* commit '8155dba8d7cb8dbe2532c17c7ea5a27f52e3095b':
  Improve code Description:     Added notes and changed argument to H5Fcreate to clarify the     latest situation Platforms tested:     Linux/64 (jelly)
2018-03-12 11:25:03 -05:00
M. Scot Breitenfeld
4460e41dfa removed duplicate code 2018-03-12 09:14:56 -05:00
Vailin Choi
f08b8fa10e Enhancement to the tool h5clear (HDFFV-10360) 2018-03-12 09:02:15 -05:00
Binh-Minh Ribler
4731819b0e Improve code
Description:
    Added notes and changed argument to H5Fcreate to clarify the
    latest situation
Platforms tested:
    Linux/64 (jelly)
2018-03-09 20:44:37 -06:00
M. Scot Breitenfeld
a5d95ec083 Merge branch 'develop' into hdf5_1_10_merge 2018-03-09 16:57:54 -06:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Binh-Minh Ribler
7c293908a7 Improving tests
Description:
    Fixed typos that caused daily test failure on Ostrich
Platforms tested:
    Linux/64 (jelly)
    Linux/ppc64 (ostrich)
2018-03-09 00:35:42 -06:00
M. Scot Breitenfeld
496af1be89 Needs to sync with lib version and Sencode. 2018-03-07 15:49:14 -06:00
Binh-Minh Ribler
e1721103c5 Merge pull request #901 in HDFFV/hdf5 from ~BMRIBLER/version_bounds_bmr:develop to develop
tests for version bounds.

* commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c':
  Miscellaneous test fixes Description:     - dtypes.c: added the use of highest version of nested datatypes to       verify the datatype's version.     - miscellaneous typos Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Added h5repack tests Description:     Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested:     Linux/64 (jelly) - cmake
  Added bounds_latest_latest.h5
  Misc improvement Description:     - Added test file for h5repack test VERIFY_INVALIDBOUNDS     - Updated MANIFEST     - Removed unnecessary header file in test     - Update h5repack script to copy the new file to the test location Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Improving tests Description:     - Added test for version bounds with nested datatypes     - Added script for additional version bound test in h5repack     - Cleaned up tests for consistency     - Removed extra included header files Platforms tested:     Linux/64 (jelly)     Linux/64 (moohan)     Darwin (osx1010test)
2018-03-07 15:09:15 -06:00
Binh-Minh Ribler
f05f9d4cff Miscellaneous test fixes
Description:
    - dtypes.c: added the use of highest version of nested datatypes to
      verify the datatype's version.
    - miscellaneous typos
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-03-06 11:41:33 -06:00
Allen Byrne
960a1d55ee plist testfiles need to be copied into VFD test folders as well 2018-03-06 09:45:26 -06:00
Allen Byrne
1599e835c6 Fix test loop 2018-03-01 08:33:45 -06:00
Allen Byrne
5a8ac1fb6c Fix test loop 2018-03-01 08:33:24 -06:00
Allen Byrne
cecb59f93f Correct if-endif block 2018-03-01 08:26:33 -06:00
Allen Byrne
e0f872c13e Correct use of list var 2018-02-28 09:02:44 -06:00
Allen Byrne
23ceda33b3 Correct use of LIST var 2018-02-28 09:01:38 -06:00
Allen Byrne
3b518415f4 Remove uncomitted test 2018-02-28 08:24:52 -06:00
Binh-Minh Ribler
4899c9ab47 Misc improvement
Description:
    - Added test file for h5repack test VERIFY_INVALIDBOUNDS
    - Updated MANIFEST
    - Removed unnecessary header file in test
    - Update h5repack script to copy the new file to the test location
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-02-27 18:04:29 -06:00
Allen Byrne
d4e7beb9ee Incr CMake min, add missing test, rework test CMake script 2018-02-27 16:39:10 -06:00
Allen Byrne
93744615f9 Fix list var 2018-02-27 14:04:34 -06:00
Allen Byrne
90f01d5b16 Fix IN_LIST usage 2018-02-27 13:33:38 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00