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Commit Graph

42 Commits

Author SHA1 Message Date
Quincey Koziol
4282c5f01f [svn-r29630] Description:
Minor style cleanups, from revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel and production
    (too minor to require h5committest)
2016-04-04 22:45:38 -05:00
Dana Robinson
32f21214bb [svn-r29545] Minor normalization w/ trunk in preparation for big merge.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           autotools parallel (MPICH 3.1.4)
2016-03-23 19:38:03 -05:00
Dana Robinson
ed380746fe [svn-r28837] Merged r28836 from revise_chunks (tarray.c fix).
Tested on ostrich w/ gcc
2016-01-07 12:45:11 -05:00
Dana Robinson
b834ac3653 [svn-r28821] Merge of r28816 from revise_chunks (tarray.c cleanup).
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2016-01-06 13:33:23 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description:
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-15 11:07:38 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in
format strings.

Tested on: h5committest
2015-03-11 17:51:14 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
2015-03-01 13:48:54 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Quincey Koziol
1809f040c9 [svn-r18419] Description:
Clean up srcdir querying code more, extracting it into single header file,
to avoid compiler warnings.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug & prod
    Linux/32 2.6 (jam)
2010-03-18 07:23:04 -05:00
Quincey Koziol
fd547cd11f [svn-r18413] Description:
Unify srcdir handling for test executables and allow them to use the srcdir
setting from configure time without requiring the 'srcdir' environment variable
be set (although you still can, to override the built in setting).  Attempted
to get this right for Windows builds also.

    Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so
that the test/testcheck_version.sh script works correctly.

Tested on:
    Linux/32 2.6 (jam)
    Mac OS X/32 10.6.2 (amazon)
2010-03-17 16:38:20 -05:00
Quincey Koziol
1bc07c6aae [svn-r18031] Description:
Bring r18030 from merge_metadata_journaling branch to trunk:

	Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

	Also, some other minor cleanups along the way.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 17:21:08 -05:00
Neil Fortner
849d015bbd [svn-r16594] Purpose: fix bug 1189
Description:
Some files apparently exist in the wild which have corrupt symbol table messages
on the root group.  These files can be opened by 1.6 (which uses the cached
information in the superblock) but not by 1.8.  This patch fixes 1.8 and 1.9 so
they can now open these files, and will correct them if necessary.  Also fix
some potential (rare) problems with array datatype versions.

Tested: jam (parallel; h5committest not working on linew or smirom)
2009-03-23 13:51:29 -05:00
Quincey Koziol
a5984f59f7 [svn-r14212] Description:
Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the
"perm" parameter from the '2' versions.

	Shift internal library usage to '2' versions.

	Add simple regression tests for '1' versions.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-18 17:02:19 -05:00
Quincey Koziol
d9e5ca72f3 [svn-r14199] Description:
Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2

	Fix thread-safe error stack initialization for API versioned error
stack printing routines.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-11 11:24:11 -05:00
Quincey Koziol
16683943c6 [svn-r14193] Description:
Make H5Dopen versioned and change all internal usage to use H5Dopen2

	Add simple regression test for H5Dopen1

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-08 14:59:36 -05:00
Raymond Lu
3015df0a5b [svn-r13501] Suppress the compiler warning about the equality comparison of floating-point values. 2007-03-12 10:52:52 -05:00
Albert Cheng
ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice.
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00
Quincey Koziol
e40557304f [svn-r12803] Description:
Finish new version of the I/O pipeline message, which is much smaller than
the previous version.  This version is used with the "use the latest version
of the format" flag.

    Closed several memory leaks/overruns (found with valgrind).

    Also, lots of compiler & formatting cleanups.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-23 15:40:14 -05:00
Quincey Koziol
14dcb6db33 [svn-r12736] Description:
Add "use the latest format" support for dataspace object header encode/
decode routines and clean up format a bit for the latest format (new to 1.8.x
releases)

    Remove storing 'perm' parameter for array datatypes in memory and the file,
and add test to make certain that if any user applications are attempting to
store them, we get some reports back.  (Should be unlikely, since the RefMan
says that the parameter is not implemented and is unsupported).
    Carry those changes into the tests, etc.

    Clean up a bunch more compiler warnings.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/enable-1.6-compat
2006-10-08 23:18:18 -05:00
Quincey Koziol
e9d6c992d6 [svn-r12474]
Clean up some compiler warnings.

Tested on:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2006-07-15 14:49:04 -05:00
Raymond Lu
1acc676fcf [svn-r12322] Purpose: Test some functions
Description: Test some data type functions that are and aren't supposed to work
with some data types.


Platforms tested: h5committest and fuss.
2006-05-02 14:42:41 -05:00
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Quincey Koziol
427ff7da28 [svn-r9727] Purpose:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)

Description:
    Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation.  So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.

    I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
    FreeBSD 4.10 (sleipnir) w/threadsafe
    FreeBSD 4.10 (sleipnir) w/backward compatibility
    Solaris 2.7 (arabica) w/"purify options"
    Solaris 2.8 (sol) w/FORTRAN & C++
    AIX 5.x (copper) w/parallel & FORTRAN
    IRIX64 6.5 (modi4) w/FORTRAN
    Linux 2.4 (heping) w/FORTRAN & C++


Misc. update:
2004-12-29 09:26:20 -05:00
Quincey Koziol
e1c1f5cc15 [svn-r9395] Purpose:
Bug fix

Description:
    Correct a couple of array bounds issues exposed by the PGI compiler

Platforms tested:
    Linux 2.4 (verbena) w/PGI compilers
    Too minor too requie h5committest
2004-10-10 14:22:03 -05:00
Quincey Koziol
987f5d5e4d [svn-r8048] Purpose:
Code cleanup & reorganization

Description:
    Move further in the testing framework cleanup, eliminating all the
global variables (moving them into testframe.c as static variables) from the
testing framework code and moving it into the libh5test.a.

Platforms tested:
    FreeBSD 4.9 (sleipnir) w & w/o thread-safety, c++ & parallel
    h5committested
2004-01-09 20:41:13 -05:00
Bill Wendling
44022e598c [svn-r6538] Purpose:
Update

Description:
    Updated the Copyright statement

Platforms tested:
    Linux (This change is only in the comments, so I just check that the
    modules still compile)

Misc. update:
2003-03-31 12:59:04 -05:00
Quincey Koziol
fa314a767e [svn-r5191] Purpose:
Bug fix

Description:
    When several level deep nested compound & VL datatypes are used, the data
    in the nested compound datatypes is incorrectly sharing the same "background
    buffer", causing data corruption when the data is written to the file.

Solution:
    Allocate a separate background buffer for each level of the nested types
    to convert.  (Also allocate temporary background buffers for array
    datatypes, where this sort of problem could occur also)

    Added more regression tests to check for these errors.

Platforms tested:
    FreeBSD 4.5 (sleipnir) & Solaris 2.6 (baldric)
2002-04-17 11:47:47 -05:00
Quincey Koziol
d456c2bb82 [svn-r4643] Purpose:
Code cleanup
Description:
    Windows is generating hundreds of warnings from some of the practices in
    the library.  Mostly, they are because size_t is 32-bit and hsize_t is
    64-bit on Windows and we were carelessly casting the larger values down to
    the smaller ones without checking for overflow.

    Also, some other small code cleanups,etc.

Solution:
    Re-worked some algorithms to eliminate the casts and also added more
    overflow checking for assignments and function parameters which needed
    casts.

    Kent did most of the work, I just went over his changes and fit them into
    the the library code a bit better.

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-11-27 11:29:13 -05:00
Quincey Koziol
7a96b1a0d2 [svn-r4482] Purpose:
Kludge
Description:
    Since we're only about halfway through converting the internal use of
    property lists from the "old way" to the generic property lists, we turned
    off snapshots to avoid exposing lots of API changes to users, until the
    APIs settled down.

    Getting the snapshots rolling again seems to have become a priority, so
    some changes are going to have to be made now that were going to be
    postponed until we were completely finished with the conversion.  This
    requires that the old API functions be able to deal with both the old
    and new property lists smoothly.

Solution:
    Kludge together the property list code so that they can transparently handle
    dealing with both the old and new property lists

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-09-26 15:29:35 -05:00
Quincey Koziol
e87fc517b8 [svn-r4355] Purpose:
Code cleanup (sorta)

Description:
    When the first versions of the HDF5 library were designed, I remembered
    vividly the difficulties of porting code from a 32-bit platform to a 16-bit
    platform and asked that people use intn & uintn instead of int & unsigned
    int, respectively.  However, in hindsight, this was overkill and
    unnecessary since we weren't going to be porting the HDF5 library to
    16-bit architectures.

    Currently, the extra uintn & intn typedefs are causing problems for users
    who'd like to include both the HDF5 and HDF4 header files in one source
    module (like Kent's h4toh5 library).

Solution:
    Changed the uintn & intn's to unsigned and int's respectively.

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-08-14 17:09:56 -05:00
Quincey Koziol
95862451f7 [svn-r4324] Purpose:
New Features!
Description:
    Start migrating the internal use of property lists in the library from the
    older implementation to the new generic property lists.

    Currently, only the dataset transfer property lists are migrated to the
    new architecture, all the rest of the property list types are still using
    the older architecture.

    Also, the backward compatibility features are not implemented yet, so
    applications which use dataset transfer properties may need to make the
    following changes:
        H5Pcreate(H5P_DATASET_XFER) -> H5Pcreate_list(H5P_DATASET_XFER_NEW)
            and
        H5Pclose(<a dataset transfer property list>) -> H5Pclose_list(id)

    This still may have some bugs in it, especially with Fortran, but I should
    be wrapping up those later today.

Platforms tested:
    FreeBSD 4.4 (hawkwind)
2001-08-10 15:47:05 -05:00
Quincey Koziol
41529d180e [svn-r4312] Purpose:
Feature shift
Description:
    Take out the v1.2.x compatibility stubs and put in the hooks for v1.4.x
    compatibility when needed.
Platforms tested:
    FreeBSD 4.3 (hawkwind)
2001-08-06 11:01:44 -05:00
Quincey Koziol
0c1c23245d [svn-r4180] Purpose:
Documentation
Description:
    Accommodate v1.2.x behavior when --enable-hdf5v1_2 is enabled.
Platforms tested:
    FreeBSD 4.3 (hawkwind)
2001-07-10 15:18:52 -05:00
Bill Wendling
bfd983e7f4 [svn-r3770] Purpose:
Update
Description:
    Changed includes of the form:

            #include <hdf5_file.h>

    to

            #include "hdf5_file.h"

    so that gcc can pick them up easier without including the system
    header files since we don't care about them.
Platforms tested:
    Linux
2001-04-03 13:09:16 -05:00
Albert Cheng
cb876a28a1 [svn-r3677] Purpose:
Bug fix (sort of)
Description:
    The RCSID string in H5public.h was causing the C++ code problem as it
    was included multiple times and C++ did not like multiple definitions
    of the same static variable.
Solution:
    Since we don't really make use of the RCSID strings as we have not
    installed it in all source files, we decided to remove it.
Platforms tested:
    eirene (linux), modi4 (IRIX64-64) both serial and parallel modes.
2001-03-20 16:32:24 -05:00
Quincey Koziol
35bc545296 [svn-r3252] Purpose:
Code cleanup.
Description:
    Fixed _lots_ (I mean _tons_) of warnings spit out by the gcc with the
    extra warnings.  Including a few show-stoppers for compression on IRIX
    machines.
Solution:
    Changed lots of variables' types to more sensible and consistent types,
    more range-checking, more variable typecasts, etc.
Platforms tested:
    FreeBSD 4.2 (hawkwind), IRIX64-64 (modi4)
2001-01-09 16:22:30 -05:00
Quincey Koziol
6cfbe1f0c7 [svn-r3111] Purpose:
Additional test
Description:
    Exercise reading background buffer from file when reading only one field
    from a compound datatype which has array fields.
Platforms tested:
    FreeBSD 4.2 (hawkwind)
2000-12-11 15:07:04 -05:00
Quincey Koziol
0726621eaa [svn-r3005] Purpose:
Backward compatibility code
Description:
    Add in code to allow the library to emulate the v1.2 API and behavior.
Platforms tested:
    FreeBSD 4.2 (hawkwind)
2000-11-27 18:01:48 -05:00
Quincey Koziol
bf9a8a39c8 [svn-r2887] Purpose:
Backward compatibility additions
Description:
    Test HDF5 v1.2 compatibility API functions (H5Tget_member_dims &
    H5Tinsert_array) when they are built into the library.
Platforms tested:
    FreeBSD 4.1.1 (hawkwind)
2000-11-13 16:26:56 -05:00
Quincey Koziol
f178100d14 [svn-r2844] Purpose:
New Feature
Description:
    Added array datatype tests to the regression tests.  These datatype
    combinations are tested currently:
        1-D array of atomic datatypes
        3-D array of atomic datatypes
        array of array of atomic datatypes
        array of compound of atomic datatypes
        array of compound of array datatypes
        array of VL of atomic datatypes
        array of VL of array datatypes

    Also added a test to verify that the older style compound datatype with
    array fields works correctly.
Platforms tested:
    FreeBSD 4.1.1 (hawkwind)
2000-11-09 16:47:59 -05:00