Improvement
Description:
Added a 5 seconds timeout to the PING command so that it can detect
host not online quicker.
Platforms tested:
The three platforms tests do not cover this command.
Test it in eirene where it is usually run.
Misc. update:
Bug Fix & Update
Description:
FPHDF5 was creating files which didn't have the EOA field in the
superblock set correctly. It turns out that the SAP was keeping this
information to itself instead of giving it to the client processes.
Naughty SAP!
Solution:
Have the SAP send this information back to the clients so that they
can update the superblock as necessary. This now creates a file (with
just the root group) that looks correct! Only problem is that there's
extra file space being allocated. Also, at program termination,
there's an infinite loop...
Platforms tested:
H5committests (run by hand on burrwhite, arabica, and modi4)
Misc. update:
New test feature
Description:
Added the VFD_LIST definition to support the "make check-vfd" tests.
Platforms tested:
h5committested.
Since check-vfd is not invoked by default, I went to each machine
to invoke them by hand. The target worked fine but there were
errors reported from those driver tests. (Those errors were beyond
the scope of this make target test.)
Misc. update:
New test feature
Description:
The various virtual file drivers (multi, family, core, ...)
are not tested automatically. One would have to do it by hand
by setenv HDF5_DRIVER <driver> and then do gmake check in test/.
Solution:
Added a new target, check-vfd, which will take the list from
$VFD_LIST and run 'make check' with each of its members.
Platforms tested:
h5committested.
Since check-vfd is not invoked by default, I went to each machine
to invoke them by hand. The target worked fine but there were
errors reported from those driver tests. (Those errors were beyond
the scope of this make target test.)
Misc. update:
Bug fix.
Description:
n_test must be inited to 1 when it is for tests within one machine.
Undid my previous mistake.
Platforms tested:
Eirene.
Did not do the h5committest because this is a script and if it works
in one machine, it most like will work in all Unix platform.
Misc. update:
new feature and some bug fixes
Description:
Add a new feature to "skip" some tests.
Sometimes, a machine has problem (e.g. titan and sleipnir having AFS
problems). Sometimes some feature in a machine is temporary off (e.g.,
PGI compilers in eirene.) The tests will be reported being SKIPPED
which will be reminder to remove the skipping once the problem is fixed.
I installed the skipping control in snaptest.cfg rather than in
allhostsfile to have a finer control to skip just a subset of the
tests of a machine, rather than skipping the all tests of a machine.
Bug fixes: fixed the miscounting of number of tests ran. It was
reporting one too many.
Platforms tested:
Only tested in eirene since eirene is the one uses it directly.
Misc. update:
Purpose:
Adding descriptions of new library features to the RM
Description:
H5Pset_fapl_log: Added new 'buf_size' parameter.
New 'flags' parameter replaced 'verbosity' parameter,
requiring new table describing 20 available flags.
H5Pset_filter: Added valid 'filter' parameter values.
Modified for Fletcher32 EDC filter.
H5Pget_filter: Added return value descriptions.
H5Pset_layout & H5Pget_layout: Modified for compact datasets.
Added the following new functions:
H5Pset_fletcher32
H5Pset_edc_check & H5Pget_edc_check
H5Pset_filter_callback
H5Pset_shuffle
Platforms tested:
Safari
IE 6
Bug fix/code cleanup/new feature
Description:
Fix h5debug to work correctly again, with all the changes over the past
few months.
Improved and cleaned up debugging output available in h5debug.
Platforms tested:
FreeBSD 4.7 (sleipnir)
Purpose: Bug fix.
Description: When I added support for filters, I forgot to add
fortan man pages file to the MANIFEST file.
When I run chkmanifest, I discovered that there was also
a typo ( ./dac/Makefile.in instead of ./doc/Makefile.in )
Solution: added ./doc/html/fortran/h5z_FORTRAN.html and chnages "a" to "o"
Platforms tested: arabica with bin/chkmanifest
Misc. update:
Bug fix
Description:
The $RUNPARALLEL is set even when parallel mode is not used.
Then it is used to launch some parallel natured test (e.g. example/ph5example)
which is not compiled to be so. That created some unnecessary problem
in some situation (e.g., Copper cannot "poe a.out" from an AFS space
because of the missing AFS token system bug.
Solution:
Setup RUNPARALLEL only when parallel mode is enabled.
Platforms tested:
Only tested in Copper since the change applies to IBM machines only.
(note that v1.4 will fail by default due to a problem when the default
production mode is used. But that is an error not related to this config file)
Misc. update:
Bug fix and Update
Description:
From Quincey's comments on the code I checked in last night:
- In H5F_close call, the "private" processes should call the
H5F_flush with the "CLEAR_ONLY" flag.
- There's no need for a special case for FPHDF5 in the
FD_real_alloc function since FPHDF5 doesn't define an alloc
function.
- The return type of H5Pset_fapl_fphdf5 should be herr_t instead
of hid_t. I don't know how it got that way in the first place.
- The variable names for MPI types and the structure typedefs
should be switched: H5FP_request/H5FP_request_t to
H5FP_request_t/H5FP_request and so on.
- In the H5FP.c module, I was commiting the H5FP_request MPI
datatype but using the wrong offset field...
Platforms tested:
Linux...will test on others, but these are mostly FPHDF5 changes.
Misc. update:
Adding new platform support
Description:
Added support for the C++ API on hpux11.00 with the compiler aCC.
Because aCC doesn't use "std," a new macro H5_NO_STD is provided
and used where "std" is presented in the library.
In addition, changed several cout's when reporting errors to cerr's.
Platforms tested:
HPUX 11.00 (kelgia)
Linux 2.2x (eirene)
IRIX 6.5.11 (modi4)
SunOS 5.7 (arabica) - by Elena
Misc. update:
Adding new platform support
Description:
Added the config file to support the C++ API on hpux11.00 with
the compiler aCC.
Platforms tested:
HPUX 11.00 (kelgia)
Linux 2.2x (eirene)
IRIX 6.5.11 (modi4)
SunOS 5.7 (arabica) - by Elena
Misc. update:
Will update MANIFEST and release_docs/RELEASE for new features.
bug Fix
Description:
MPI stuff was getting into the non-parallel headers.
Solution:
#ifdefed the headers out if H5_HAVE_FPHDF5 isn't defined...
Platforms tested:
Sol, Modi4
Misc. update:
Update
Description:
When doing an allocation, check to see, if it's an FPHDF5
driver, if only the captain should be performing the allocation
Platforms tested:
Linux, Modi4, Sol
Misc. update:
Update
Description:
Have the FPHDF5 module initialized on startup. Have only the captain
process perform certain functions (like flushing during an F_close
call or allocating the superblock).
H5Fistore needed a few checks to see if it was working with an FPHDF5
driver. Done similarly to how MPI and MPIPOSIX drivers are checked..
Platforms tested:
Linux, Modi4, Sol
Misc. update:
Why not?
Description:
Lots of changes. This is basically a "commit because there are a lot
of changes" commit.
The server now acts more like a metadata caching server. The dumping
mechanism finally works (I think). At least in the test I did it
seemed to write things back. There's a new MPI TAG to use
(H5FP_TAG_DUMP) when dumping things. Changed a lot of the functions
from passing a structure around to just passing a pointer to that
structure. I have no clue why I did it the previous way...
Um...And more synchronization stuff between the client and server.
The protocol between the two was being broke in a couple of places.
We're getting closer!
Platforms tested:
Linux (probably Modi4 too)
Misc. update:
Bug Fix
Description:
The MPI datatypes we were committing weren't using the correct
structure.
Also, we needed to know the rank of the captain process inside of the
BARRIER COMM.
Solution:
Changed to use the correct structure.
Got the Captain process's rank and Bcast it to the "privates".
Platforms tested:
Linux
Misc. update:
Update
Description:
More changes to the FPHDF5 file driver. Too many to mention here.
Some highlights:
- Addition of lock/unlock methods to the driver, though they
aren't implemented fully just yet.
- Extra query functions to determine various things about the
file. (If this is the captain process, etc)
- Fixes to make things work...
Platforms tested:
Linux
Misc. update:
New Feature
Description:
Added support for the lock and unlock function calls for file
drivers. Only FPHDF5 uses this feature. All of these drivers don't
define lock or unlock methods.
Platforms tested:
Linux, Modi4, Sol
Misc. update:
Cleanup
Description:
The H5O_FPHDF5 object was left in this header file by mistake when
the H5Ofphdf5 module was removed
Solution:
Removed it.
Platforms tested:
Linux
Finish code cleanup
Description:
Wrap up the conversion of H5F_flush's multiple boolean flags into a single
bitfield of flags by pushing the flags down into the H5AC_flush and
H5F_istore_flush routines.
Also, changed the flags from H5_FLUSH_<foo> to H5F_FLUSH_<foo> to be more
consistent with rest of library.
And reverted the changes to H5FDflush and H5FD_flush routines.
Platforms tested:
FreeBSD 4.7 (sleipnir)
Solaris 5.8 (sol)
IRIX64 6.5 (modi4) w/parallel
Misc. update:
Refactoring of Flush Logic
Description:
The Flushing logic passed in multiple flags to indicate what type of
flush it was: closing, invalidate, alloc only. This made extending
the function of the flush logic to handle other flags annoying.
Solution:
I changed it to be just one bitmasked flag to indicate what type of
flushing to do. I also added the CLEAR_ONLY flag, which will be used
in the FPHDF5 stuff.
Platforms tested:
h5committest doesn't work for me (my environment isn't setup on the
other machines I guess). I tested it manually:
Linux parallel & C++
Sol Fortran
Modi4 parallel & Fortran.
Purpose: Catching up with the C library
Description: Added tests for the follwoing new fortran functions
h5iget_name_f
h5tis_variavle_str_f
h5zunregister_f
h5zfilter_avail_f
h5pset_shuffle_f
h5pset_fletcher32
h5pset_edc_check_f
h5pget_edc_check_f
h5dfill_f
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with the C library
Description: Added the follwoing new fortran functions
h5iget_name_f
h5tis_variavle_str_f
h5zunregister_f
h5zfilter_avail_f
h5pset_shuffle_f
h5pset_fletcher32
h5pset_edc_check_f
h5pget_edc_check_f
h5dfill_f
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with the C library
Description: Added file to provide PGI Fortran support
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with the C library
Description: Enabled checking for shuffle, deflate and checksum filters for Fortran
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with the C library
Description: Updated documentation files to include information on the following functions
h5iget_name_f
h5tis_variavle_str_f
h5zunregister_f
h5zfilter_avail_f
h5pset_shuffle_f
h5pset_fletcher32
h5pset_edc_check_f
h5pget_edc_check_f
h5dfill_f
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with C library
Description: Fortran Library would not configure correctly with PGI compilers
because configure couldn't find any appropriate filesin the config
directories.
Solution: Added new files for PGI compilers support on Linux 2.4
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
Purpose: Catching up with C library
Description: Added new files for PGI compilers support on Linux 2.4
config/linux-gnuaout
fortran/config/linux-gnuaout
Added new source and test files for filters
fortran/src/H5Zf.c
fortran/src/H5Zff.f90
fortran/test/tH5Z.f90
Solution:
Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel)
Misc. update:
New feature
Description:
Added feature to print a summary of total number of tests and time spent
in each host.
Platforms tested:
Did not run h5committest because it does not test this script.
Did test it out in eirene and burrwhite.
Misc. update:
No document change.
Bug fix
Description:
"make distclean" is failing currently in the doc/html/ed_libs and
doc/html/ed_styles directories for lack of a 'Dependencies' file.
Solution:
Add it.
Platforms tested:
FreeBSD 4.7 (sleipnir)
Misc. update:
Bug Fix
Description:
"using namespace std" isn't supported on HP-UX. We ahve the H5_NO_STD
flag begin set, but it wasn't being used.
Solution:
Added the check to the #ifdef line to see if H5_NO_STD is defined
before trying to use it in the program.
Platforms tested:
Kelgia
Bug Fix
Description:
Kelgia needs the old header file format for #includes.
Solution:
Conditionally include the old header file format if
OLD_HEADER_FILENAME is defined.
Platforms tested:
Kelgia
Purpose:
DreamWeaver (DW) adaptation of the HDF5 doc set, introducing the use of
stylesheets and DW libraries.
Stylesheets -- for consistent format management.
DW libraries -- for managing common elements across documents.
Platforms tested:
IE 5 and 6
Netscape
Purpose:
Adding stylesheets to the HDF5 doc set (via DW libraries).
Description:
These HTML stylesheets are for consistently managing formatting issues.
The *Elect* stylesheets will be used in the distributed HTML doc set,
i.e., the electronic version; the *Print* stylesheets will be used to
generate printer-friendly versions.
Platforms tested:
IE 5 and 6
Netscape
Purpose:
Adapting the document set for use with DreamWeaver.
Description:
These are the DreamWeaver library files, which will be used to manage
common elements across documents: elements that are identical in many
places across the doc set and when they change, they change everywhere.
Testing:
IE 5 and 6
Netscape
