Commit Graph

84 Commits

Author SHA1 Message Date
Scot Breitenfeld
1706355ee1
removed the use of encoded single apostrophe (#3261)
* removed the use of encoded single apostrophe, and fix H5Dread_chunk from write to read

* updated sanitizer paragraph
* fixed brief description for H5Fget_info
2023-07-20 09:01:58 -05:00
Allen Byrne
9b5d742529
Replace 1_10 reference with develop branch (#3227) 2023-07-13 12:17:18 -05:00
H. Joe Lee
e03f1951c9
docs: remove redundancy in Data Transfer section of user guide (#3208) 2023-06-29 08:25:05 -05:00
Dana Robinson
aebac33a1f
Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Sean McBride
65d8c93470
Many fixes to various compiler warnings (#3124)
* Fixed various -Wmissing-variable-declarations by adding static keyword
* In a few cases, renamed the variable suffix from _g to _s.
* Fixed some -Wmissing-variable-declarations by using different declaration macros
* Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero
* Fixed various -Wcomma warnings
* Fixed clang -Wstrict-prototypes warnings
* Fixed various -Wunused-variable warnings
* Updated some casts to fix the only 3 -Wcast-qual warnings
* Fixed the only -Wsometimes-uninitialized warning
2023-06-18 22:13:38 -07:00
H. Joe Lee
fcadfca992
Add Python for HDF-EOS zoo description (#3129) 2023-06-14 19:03:26 -07:00
bmribler
a64d3a989a
Fixed typo: hdf5-examples should be hdf5_examples in a link (#3101) 2023-06-11 07:08:39 -07:00
Lori Cooper
ee84868c56
Added new HDF5 logo and minor text and link changes to README.md (#3085) 2023-06-08 12:57:18 -07:00
Allen Byrne
d6059b9d75
Fix doxygen comments in structure and enable FAIL_ON_WARNINGS (#3059) 2023-06-06 14:43:09 -05:00
Allen Byrne
00e6c2d221
Remove most unused options which are defaulted #2998 (#3019)
* Remove most unused options which are defaulted #2998

* Fix property list references
2023-05-26 09:19:32 -07:00
Scot Breitenfeld
e08c822c6f
Fixed Fortran Doxygen warnings (#3017)
Fixes Fortran doxygen warnings, #2998
2023-05-26 06:29:38 -07:00
Dana Robinson
5c2e434dc6
Fix 'datatype' misspellings ('dataype') (#2984) 2023-05-19 09:05:23 -07:00
Allen Byrne
1054efdaf8
Add missing terminator (#2888) 2023-05-03 14:09:26 -07:00
Allen Byrne
571990d5c4
Changes to isolate API Test option files and use fetchcontent (#2880) 2023-05-03 11:45:16 -05:00
Scot Breitenfeld
a0340338e5
Add Fortran Selection IO APIs (#2864)
new selection IO fortran APIs with tests
2023-05-01 15:21:47 -07:00
Dana Robinson
265494b5b9
Remove "the the" from comments and docs (#2865) 2023-05-01 09:06:39 -07:00
Neil Fortner
3236fb79ce
Implement selection I/O with type conversion (#2823)
Initial implementation of selection I/O with type conversion.  Allows
Parallel collective I/O with type conversion, as long as selection I/O
is enabled.
2023-04-28 16:58:25 -07:00
Scot Breitenfeld
def21b1e33
Added Fortran Async APIs (#2715)
H5A, H5D, H5ES, H5G, H5F, H5L and H5O async APIs were added.
2023-04-21 11:07:48 -05:00
Scot Breitenfeld
d2345e9f0c
Addressed various Doxygen grammar issues. (#2524)
* reviewed H5A

* Addressed various grammar issues.

* remove double words, spelling fixes

* replace the use of rawdata with raw data
2023-03-13 11:53:08 -05:00
mattjala
4b7bdfec69
Update ReferenceManual.dox (#2517) 2023-03-08 15:08:04 -06:00
Mark Kittisopikul
04682f2788
Fix H5Dchunk_iter doxygen example, cherry-pick of ef3bed6 (#2519) 2023-03-08 15:06:17 -06:00
Mark Kittisopikul
5d3d43b1ee
Fix new codespell issues (#2521)
* Fix new codespell issues

* Have codespell ignore ./config/sanitizer/sanitizers.cmake
2023-03-08 14:42:47 -06:00
Allen Byrne
877e4a67c5
Missing or misplaced entries in API reference tables #2470 (#2472)
* Missing or misplaced entries in API reference tables #2470

* Doxy corrections
2023-03-01 06:07:37 -08:00
Allen Byrne
2c9de7a9ae
Port VOL connector Guide to doxygen (#2333)
* Port VOL connector Guide to doxygen

* Fix spelling

* Updated VOL UG ref and added release note
2023-01-18 01:04:41 -08:00
Allen Byrne
9f5cf0a457
H5F_LIBVER_LATEST changes for move to 1.15 (#2288)
* H5F_LIBVER_LATEST changes for move to 1.15

* Add new default api check

* Format fixes

* Fix default configure

* fix lib version tests

* Fix another version variable

* Add 1.14 doc link
2022-12-21 10:07:25 -08:00
Allen Byrne
c1e44d32e6
Fix doxygen warnings and remove javadocs (#2324)
* Fix doxygen warnings and remove javadocs

* fix typo
2022-12-20 16:59:40 -06:00
Scot Breitenfeld
70cf2c390b
Removed idioms and misc. text clean-up (#2320)
* removed idioms and misc. text clean-up, Issue #2135

* removed idioms and misc. text clean-up, Issue #2135
2022-12-16 19:56:52 -08:00
Scot Breitenfeld
8102fa8c97
Only document Fortran functions (#2319)
* Only document Fortran functions

* Only document Fortran functions

* Only document Fortran functions

* Only document Fortran functions
2022-12-16 19:52:08 -08:00
Gerd Heber
10c693a04f
Update hdf5_header.html
Use less awkward language.
2022-12-15 08:49:19 -06:00
Allen Byrne
169896aedb
Remove hard-coded version text (#2260)
* Remove hard-coded version text

* Use macOS 11 until accum test is fixed see #2261
2022-11-16 15:13:46 -06:00
Gerd Heber
2025d047e2
Multidataset RFC updates (#2238) 2022-11-08 17:46:52 -08:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Scot Breitenfeld
7d1997ff7b
Removed the file, func, line args in the _async APIs fpr doxygen (#2179)
* Removed the: file, func, line args in the _async APIs from the doxygen arguments. Documented H5ESclean.

* format fixes

* fixed DOXYGEN_PREDEFINED

* Fixed the #ifdet logic for doxygen, added missing multi-dataset va_args

* format fixes

* Use H5_DOXYGEN instead of H5_DOXYGEN_FORTRAN

* reordered multidataset declarations

* alt. for H5Aclose_async and H5Acreate_async

* made doxgyen API into seperate blocks

* updated codespell

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-10-25 10:41:38 -07:00
Allen Byrne
23e237e728
Port VOL User Guide to doxygen (#2165)
* Port VOL User Guide to doxygen

* Fix spelling

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-10-25 08:51:08 -07:00
Allen Byrne
ea902f9ace
Implement option for using CMake GNUInstallDirs (#2175)
* Implement option for using CMake GNUInstallDirs

* Add release notes
2022-10-25 08:50:43 -07:00
Allen Byrne
dcd332d231
Restructure ref manual presentation (#2123) 2022-09-26 22:49:29 -05:00
Allen Byrne
a9d8b469f4
Use doxygen snippets for common tables (#2104) 2022-09-16 12:45:06 -05:00
Allen Byrne
45178c87a3
develop Merge doxygen from 1.12 branch (#2095) 2022-09-14 15:44:24 -05:00
Scot Breitenfeld
99f17c7271
Doxygen Fortran (#2062) 2022-09-07 17:11:20 -05:00
Allen Byrne
c8fdd92cd4
Update CMake code to 3.18 minimum version (#2080)
* Update CMake code to 3.18 minimum version

* Updated release note
2022-09-02 17:31:29 -07:00
Gerd Heber
e1d6157c5d
Added VOL connector feature flag RFC. (#2064) 2022-08-24 10:30:15 -05:00
luzpaz
174505ca3c
Fix typos found in the rest of the hdf5 code-base (#1985)
* Fix typos found in the rest of the hdf5 code-base

* Typo in tool.cmake

* Revert "Typo in tool.cmake"

This reverts commit 06b8403d99.

* Fix clang-format styling
2022-08-10 13:57:26 -07:00
jhendersonHDF
bf07e0f2c9
Subfiling updates for release (#1963)
* Remove generated file h5fuse.sh

* Link pthreads library when Subfiling VFD is built

* Switch to MPI I/O driver for Subfiling HDF5 stub file

* Rough first implementation for Subfiling file deletion

* Subfiling VFD - get file dirname for file deletion

* Subfiling VFD - set lock callback to NULL for now to avoid performance
issues

* Committing clang-format changes

* Minor tidying up of Subfiling testing

* Fixups for Subfiling VFD support in tools

* Tidy up Subfiling public interface and add Doxygen

* Respect Subfiling configuration settings from application

* Add release note for Subfiling VFD

* Committing clang-format changes

* Committing clang-format changes

* Shorten some Subfiling environment variable names

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-04 10:56:48 -07:00
Gerd Heber
33f6ade6e7
Fixes #1946 (#1947) 2022-07-29 05:20:55 -07:00
Allen Byrne
ae414872f5
Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
Dana Robinson
96edaa304c
Removes padding-right from Doxygen href tags (#1934) 2022-07-26 09:23:11 -07:00
vchoi-hdfgroup
c835d16a59
Remove superfluous dot from hl doxygen. (#1891)
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
2022-07-14 09:32:09 -07:00
Dana Robinson
ff089f8e36
Updates the patterns in Doxyfile.in to accept H5*develop.h (#1865) 2022-07-11 06:35:46 -07:00
Gerd Heber
7e1bde1cb5
Merge pull request #1857 from gheber/fix-doxy-warnings-and-cosmetics
Fix Doxygen warnings and cosmetics
2022-07-08 20:16:43 -05:00
Gerd Heber
6bc41fb11c
Resolve Allen's comment. 2022-07-08 12:48:48 -05:00