Commit Graph

15283 Commits

Author SHA1 Message Date
Quincey Koziol
9ceca0f89a [svn-r28710] Description:
Bring r28708 from revise_chunks branch:

    Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure.  Misc. minor code cleanups
as well.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    h5committest forthcoming
2015-12-19 09:42:15 -05:00
Quincey Koziol
2c55e17cfb [svn-r28702] Description:
Fix typo in comment.

Tested on:
    (Unneeded)
2015-12-17 10:10:06 -05:00
Dana Robinson
0a00732c4d [svn-r28696] Minor normalization with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-17 01:31:27 -05:00
Dana Robinson
1ab7e61c39 [svn-r28678] Updated the cache_tagging test to correctly output tags in
the debug/verbose function.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-15 21:27:35 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag.
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
2015-12-15 15:52:12 -05:00
Dana Robinson
410d8365d0 [svn-r28663] Merge of r28662 from revise_chunks.
Whitespace only.
2015-12-15 11:15:55 -05:00
Dana Robinson
ae8e3348cf [svn-r28655] Updated MANIFEST :/ 2015-12-15 00:38:03 -05:00
Mohamad Chaarawi
2824e6bef0 [svn-r28649] - add new API to toggle collective metadata write.
- set default to FALSE
- fix some bugs.
2015-12-14 14:53:31 -05:00
Dana Robinson
61cee5f91a [svn-r28646] Minor normalization with revise_chunks.
Also purged obsolete /*ARGSUSED*/ from the library.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 14:19:19 -05:00
Dana Robinson
ddd91a7b19 [svn-r28643] Add H5D_t pointer to chunk callback.
Normalization for future single chunk indexing.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 13:31:53 -05:00
Albert Cheng
322816c966 [svn-r28638] HDFFV-9273: cmakehdf5 --script failed in linux platypus
Solution: remove --script option from cmakehdf5.

Tested: platypus
2015-12-14 12:42:26 -05:00
Mohamad Chaarawi
7a0cdfbbac [svn-r28636] merge from trunk. 2015-12-14 10:22:29 -05:00
Dana Robinson
2cb441c507 [svn-r28629] Minor normalization with revise_chunks.
Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 05:50:43 -05:00
Dana Robinson
7e4fb72913 [svn-r28626] Brought VFD-level file locking code over from revise_chunks.
Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 05:03:54 -05:00
Dana Robinson
f6c7631b3c [svn-r28624] Minor normalization of H5FA package with revise_chunks.
Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 02:42:13 -05:00
Dana Robinson
59c2f32bc7 [svn-r28620] Minor normalization of H5HL package with revise_chunks.
Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 01:47:35 -05:00
Dana Robinson
3cdcdbc03e [svn-r28616] Normalization of H5HL package with revise_chunks.
NOTE: Flush dependency code was not moved.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 w/ CMake 3.3.2
    serial only (Autotools and CMake since new files were added)
    (these changes have been in revise_chunks for a long time)
2015-12-14 00:34:41 -05:00
Dana Robinson
91f01bd702 [svn-r28614] Normalization of H5FS package with revise_chunks.
Mostly minor fixes like warnings, etc.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-13 21:16:54 -05:00
Dana Robinson
abf03a6c65 [svn-r28612] Normalization of H5G package with revise_chunks.
Mostly minor fixes like warnings, etc.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-13 20:22:33 -05:00
Quincey Koziol
e78db67c62 [svn-r28606] Description:
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-12-13 00:42:36 -05:00
Dana Robinson
aa4fc58ac9 [svn-r28599] Normalization of tools with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only, autotools and CMake (3.3.2)
2015-12-11 14:14:43 -05:00
Dana Robinson
f53c939bd0 [svn-r28581] Brought flock changes over from revise_chunks as well as a few
minor tweaks from H5private.h.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only, autotools and CMake (3.3.2)
2015-12-11 03:19:10 -05:00
Dana Robinson
1b62a22e0c [svn-r28577] Normalize test/th5o.c with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-10 22:55:01 -05:00
Dana Robinson
1dae74395b [svn-r28575] Normalize test/file_image.c with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-10 22:44:50 -05:00
Dana Robinson
7822924da9 [svn-r28573] Merge of r28109 from revise_chunks. Minor change to test/vds.c.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-10 22:18:03 -05:00
Dana Robinson
84d9914a13 [svn-r28570] Normalization of test/lheap.c with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-10 21:17:20 -05:00
Dana Robinson
308426c6e3 [svn-r28568] Normalization of test/big.c with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-10 21:05:50 -05:00
Dana Robinson
fe938a0d71 [svn-r28565] Normalization of bin/trace with revise_chunks in preparation
for merge.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64)
           bin/trace run only
2015-12-10 20:09:28 -05:00
Albert Cheng
bb2cdb9283 [svn-r28563] HDFFV-9612: added ability to run multiple make commands.
Added --njobs option to special number of jobs (-j N) to allow multiple
commands during build (cmamke) and testing (ctest).

Tested: platypus.
2015-12-10 18:01:27 -05:00
Dana Robinson
46aa3ded7c [svn-r28555] Normalization of Fortran directory with revise_chunks (minor).
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial, with and without the direct VFD enabled
2015-12-09 22:56:33 -05:00
Dana Robinson
5855f5d431 [svn-r28553] Merge of r28436 from revise_chunks. Cleans up warnings exposed
by gcc 5.2 in the flex/bison code.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-09 21:36:22 -05:00
Dana Robinson
af371007e8 [svn-r28538] Merge of r28479 from revise_chunks.
Fixes OS X compilation problems and brings some Linux symbols in
line with the Autotools when building with CMake.

Tested on: 64-bit OS X 10.11.1 El Capitan (Darwin 15.0.0)
           Xcode 7.1 Apple LLVM 7.0.0 (clang-700.1.76)
2015-12-08 15:49:12 -05:00
Neil Fortner
015d8047fb [svn-r28533] Fix loops in H5Dvirtual.c to only loop over used entries in VDS mapping list,
instead of all allocated entries.

Tested: ummon (too minor for full h5committest)
2015-12-07 14:31:47 -05:00
Allen Byrne
dc4a9970ec [svn-r28499] Correct working dir 2015-12-03 10:48:18 -05:00
Allen Byrne
ab1c4e6ba2 [svn-r28497] Avoid race condition on creating same source file. 2015-12-03 10:19:52 -05:00
Dana Robinson
8552007518 [svn-r28488] Removed second argument from AC_CHECK_SIZEOF() in configure.ac. This is no
longer needed for cross compiling and is ignored.

Tested on: h5committest
2015-12-02 21:45:08 -05:00
Dana Robinson
68e2b78957 [svn-r28467] Removed commented-out tests from the list of simple tests. They are handled in the additional tests section, below the list.
Tested on 64-bit Windows 10 w/ VS2015 and CMake 3.3.1.
2015-11-30 11:42:37 -05:00
Dana Robinson
8de50ab664 [svn-r28463] Merge of -r28460 from revise_chunks. Removes -std=c99 from
C++ flags under CMake.

Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0)
    gcc 5.2.1, CMake 3.3.2
2015-11-24 14:29:21 -05:00
Quincey Koziol
e3c415fe5a [svn-r28452] Description:
Normalization changes against revise_chunks branch.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-11-23 15:52:33 -05:00
Quincey Koziol
8830acb2cb [svn-r28422] Description:
Revert most of r27549, since revise_chunks code requires debugging contexts
for v2 B-trees.  Also, misc. warning cleanups and alignments w/changes on
revise_chunks branch.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-11-20 15:24:23 -05:00
Quincey Koziol
5c6f1819d5 [svn-r28416] Description:
Refactor time conversion code to put all the system-specific changes into
one routine, H5_make_time, in H5system.c.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-11-20 09:43:58 -05:00
Allen Byrne
54aa68df1a [svn-r28403] Update to include cdash submit options 2015-11-19 13:32:41 -05:00
Allen Byrne
2e9220b8e6 [svn-r28397] Add note about the "H5_BUILT_AS_DYNAMIC_LIB" compile definition 2015-11-18 15:26:11 -05:00
Albert Cheng
9de281111f [svn-r28393] HDFFV-9573: bin/h5vers failure, claiming reconfigure failed.
bin/reconfigure is replaced by autogen.sh.

Fixed h5vers to call autogen.sh instead.

Tested: Jam
2015-11-18 13:28:17 -05:00
Albert Cheng
9d72e487e3 [svn-r28388] HDFFV-9573: bin/chkmanifest did not like the missing generated file.
Changed bin/chkmanifest to generate the files if configure is missing.

Tested: jam
2015-11-18 12:31:51 -05:00
Allen Byrne
71ee2155d4 [svn-r28377] CMake 3.4 policy change 2015-11-17 10:07:49 -05:00
Albert Cheng
bbfd8a30aa [svn-r28373] HDFFV-9573: Our helper tests bin/release and bin/h5vers are not working properly
bin/release uses the content of MANIFEST file to build the release tarball. But all the files generated by autogen had been removed. Therefore the release would not contain those needed generated files for a proper release.

Solution: Added all those generated files to the tail of MANIFEST and titled it accordingly. (Somehow bin/chkmanifest does not complain against these entries though they are not svn managed. This needs further investigation.)

Test: bin/release generated the release tarball in jam, then use it in Platypus to do a full build (--enable-fortran --enable-cxx). All passed.
2015-11-17 09:37:17 -05:00
Allen Byrne
893d5a4e7a [svn-r28371] Update script mode order of commands 2015-11-17 09:07:51 -05:00
Quincey Koziol
5f6e580533 [svn-r28346] Description:
Bring in cleanups from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (too minor to require full h5committest)
2015-11-14 22:32:00 -05:00
Albert Cheng
3bdc5d7aa4 [svn-r28342] DAILYTEST-195: Osx1010test has culmulated a lot of mounted volumes from cmakehdf5
installation.

Tried to find out what went wrong but all output files were deleted already.
Added a verbose option to display all cmake process output in order to see what
might have gone wrong. Default is on.

Using --disable-verbose will turn it off.

Tested: osx1010dev, osx1010test, playtypus.
2015-11-13 17:22:41 -05:00