Commit Graph

563 Commits

Author SHA1 Message Date
Scot Breitenfeld
4d34a0c6ad [svn-r26051] Fix for HDFFV-9092
Change AC_TRY_RUN TO AC_TRY_COMPILE

Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use
AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory:

aclocal_cxx.m4 (for C++ tests)
aclocal_fc.m4 (for Fortran tests)

tested: jam
2015-01-27 12:17:09 -05:00
Mohamad Chaarawi
50c5f1ab2c [svn-r25963] Do not remove the prefix in the chunk alloc file, otherwise it makes
the H5Fcreate fail when prefix is specified.

tested parallel on Jam.
2015-01-08 12:36:10 -05:00
Quincey Koziol
662892e8b1 [svn-r25928] Description:
Minor code cleanups found while reviewing 'avoid_truncate' changes.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
2014-12-29 00:17:22 -05:00
Mohamad Chaarawi
cbd0460b1b [svn-r25921] - wrap MPI 3 usage with MPI_VERSION compile time check.
- build out unbuffered stdout/err for windows
2014-12-23 09:54:47 -05:00
Quincey Koziol
c0ec3bf38e [svn-r25884] Description:
Minor code cleanups found while reviewing 'avoid truncate' branch.

Tested on:
    MacOSX/64 10.10.1 (amazon) w/serial & parallel
    (too minor to require h5committest)
2014-12-10 22:00:08 -05:00
Mohamad Chaarawi
3ba28fb7ee [svn-r25790] fix bug in shapesame test where test fails with more than 10
procs. This is a fix in the test itself and does not have to do with
the library code.

tested cloud machine with parallel.
2014-11-05 10:47:44 -05:00
Mohamad Chaarawi
5362b49bec [svn-r25779] fix bug in parallel tests where a compact dset is being created
proportional to the process count without regard to the 64KB limit for
compact datasets.

tested on jam with parallel.
2014-11-04 12:52:38 -05:00
Mohamad Chaarawi
87bed2c752 [svn-r25651] Fix for: HDFFV-8715
HDF5_PARAPREFIX is ignored in parallel dense attribute and performance tests.

tested on Jam w/ parallel.
2014-10-01 17:02:41 -05:00
Mohamad Chaarawi
ace4fef4d6 [svn-r25573] fix error output when dataset verify detects wrong data. 2014-09-05 14:30:42 -05:00
Mohamad Chaarawi
8771fba1de [svn-r25503] - fix bug in encode/decode plist parallel test when 1 proccess is used to run the test.
- fix warning in t_chunk_alloc.
2014-08-01 14:24:52 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
92cc75bfae [svn-r25401] add serial and parallel regression tests for zero dset read/write bug. 2014-07-09 14:01:25 -05:00
Mohamad Chaarawi
382976f3e9 [svn-r25398] add a check to make sure MPI_File_get_size() returns correct value (HDFFV-8856). 2014-07-09 10:19:11 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Allen Byrne
e23830d29f [svn-r25282] remove obsolete file 2014-06-13 16:16:34 -05:00
Allen Byrne
21474f8eee [svn-r25188] Implement change to cmake_ext_mod config folder
Tested: local linux
2014-05-14 14:50:28 -05:00
Allen Byrne
d517af5086 [svn-r25135] Remove property will fail - This only is true on windows shared. 2014-04-29 10:26:35 -05:00
Allen Byrne
9fd8692663 [svn-r25128] HDFFV-8172: Add tests properties that indicate it will fail and to depend on PASSED in the output. 2014-04-28 15:20:11 -05:00
Larry Knox
c6e3e68297 [svn-r25117] Removed LT_ADD_LIBHDF5_DEPENDENCY configure conditional to roll back fix for removing rpaths from l
ib files.  The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no.  This removes rpath from lib files on Linux
and solaris machines.

Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
2014-04-25 16:59:53 -05:00
Quincey Koziol
7b6eae2ddf [svn-r25084] Description:
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
2014-04-23 11:30:25 -05:00
Allen Byrne
98bbf4a36a [svn-r24948] Group tests by Common name
Remove WIN32 AND NOT CYGWIN if blocks - should be just WIN32

Tested: local linux CMake
2014-04-02 13:35:01 -05:00
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Quincey Koziol
5b7c8c7a7d [svn-r24772] Description:
Correct some dynamically sized arrays that fail on Windows.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel
2014-03-10 13:03:35 -05:00
Quincey Koziol
ac0ef34a41 [svn-r24769] Description:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (h5committest forthcoming)
2014-03-07 14:12:20 -05:00
Mohamad Chaarawi
863ff882b6 [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward project for
view objects.  The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.

Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
2014-02-13 17:12:46 -05:00
Mohamad Chaarawi
6ceb9711b8 [svn-r24612] fix bugs in parallel tests exposed in corner cases when running with 1
or 2 processes.

First bug is in testpar/t_mdset.c, where the test reports an error in
addition to skipping the test if there are less than three procs. Fix
to just skip the test.

Second bug is in testpar/t_dset.c in actual_io_mode tests, where
incorrect expected value for IO mode was set if the number of procs
running the test is 1.

tested with h5committest.
2014-01-06 12:56:45 -05:00
Dana Robinson
0aa06db0a4 [svn-r24380] The parallel test code now uses HDfree, HDmalloc, and HDcalloc
exclusively.

Part of the preparation for a fix for HDFFV-8551.

Tested on:
    32-bit LE linux (jam) w/ parallel and Fortran.

There are no behavior changes, so testing was minimal.
2013-10-31 02:44:00 -05:00
Larry Knox
ab239810e1 [svn-r24194] Don't add hdf5 library dependencies to lib files when --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276.
Tested with h5committest and on hdf-duck.
2013-09-23 20:14:24 -05:00
Allen Byrne
c502d81a8c [svn-r24029] Move TESTS to seperate file to allow easier editing by all developers.
Tested: local linux
2013-08-19 16:49:44 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Albert Cheng
00648b6875 [svn-r23607] Purpose:
Daily test failed in koala with parallel and v16compat API from the previous
commit r22735.

Descriptoin:
    Changed to use H5Dopen2() instead of H5Dopen().

Tested: koala --enable-parallel --with-default-api-version=v16.
No h5committest test since this is limited to parallel test program.
2013-04-22 13:44:17 -05:00
Quincey Koziol
46342f6398 [svn-r23544] Description:
Correct API version mistake w/H5Acreate -> H5Acreate2

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/parallel
2013-04-04 08:30:45 -05:00
Quincey Koziol
b4331b2ff3 [svn-r23529] Description:
Stop aliasing property to indicate internal collective metadata operations
with property to perform collective raw data operations from the application.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/paralllel
2013-04-02 21:50:50 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
2013-02-18 15:56:21 -05:00
Allen Byrne
2fba171a67 [svn-r23160] HDFFV-8227: Mac DARWIN requires CMake 2.8.10 2013-01-14 13:35:30 -05:00
Jonathan Kim
51c5bf8aa7 [svn-r22992] Purpose:
HDFFV-8146 - Remove "multi-chunk IO without optimization" sub-feature from MPI I/O optimization for chunked dataset feature

Description:
  The “multi-chunk IO without optimization” feature is removed and made the related xfer property (H5FD_MPIO_CHUNK_MULTI_IO) go directly to “multi-chunk-io” feature.
  Also update/fix/cleanup testings (chunk collective IO and actual chunk opt mode) accordingly.
    
Tested: 
    jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
2012-10-30 11:28:17 -05:00
Larry Knox
33504deb83 [svn-r22908] Reverted changes in revision 22819
Tested with h5committest on jam, koala and ostrich.
2012-10-16 16:38:58 -05:00
Larry Knox
c5371d7618 [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries.
Tested on jam,koala,ostrich(h5committest) and other THG machines.
2012-09-26 23:49:19 -05:00
Quincey Koziol
7702c7f760 [svn-r22817] Description:
Update CMake files for new encode/decode property list files.
2012-09-26 15:53:18 -05:00
Quincey Koziol
6a89177036 [svn-r22807] Description:
Add encode/decode API routines for property lists: H5Pencode/H5Pdecode.

Tested on:
        FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN,
                in production mode
        Mac OS X/32 10.7.3 (amazon) in debug mode
        Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
2012-09-25 10:47:25 -05:00
Allen Byrne
eff696a3b0 [svn-r22785] HDFFV-8153: Pull POSIX_C_SOURCE define out to separate variable. Use ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) in non-fortran CMakeLists.txt folders
Tested: jam with intel compilers
2012-09-18 17:08:07 -05:00
Jonathan Kim
0a5b0304ad [svn-r22763] Purpose:
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access

Description:
    Fixed Daily test failed from the previous commit r22735. (ember)
    Also changed H5Pget_mpio_no_collective_cause() parameter type from
    H5D_mpio_no_collective_cause_t to uint32_t due to change to return
    combined bitmap value which can be not emun defined value.

Tested: 
    jam (linux32-LE), koala-pp (linux64-LE), ember, h5committest
2012-09-14 15:24:02 -05:00
Quincey Koziol
602c716f76 [svn-r22758] Description:
Bring generic improvements from encode/decode property list branch to
the trunk.  This includes a better version of the property list comparison
routine, cleaned up compiler warnings, and some cleaned up property list
callbacks.  Also, started on changes to clean up parallel test output, so that
it doesn't report successful tests from each process.

Tested on:
    Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel
    Linux 2.6/32 (jam) w/debug
    Solaris 2.7/64 (linew) w/debug
2012-09-13 12:08:01 -05:00
Jonathan Kim
f4b0229467 [svn-r22744] Purpose:
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access                                                                 

Description:
    Daily test failed from the previous commit r22735. (ember)
    Skip tests not to disrupt other tests while finding a solution for ember.
2012-09-08 14:16:40 -05:00
Jonathan Kim
4990fdaba6 [svn-r22743] Purpose:
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access

Description:
    Daily test failed from the previous commit r22735. (ember)
    Follow actual_io function to sync before go futher as this is similar 
    function.

Tested: 
    jam (linux32-LE), koala-pp (linux64-LE), ember
2012-09-07 17:14:08 -05:00
Jonathan Kim
394f5403a0 [svn-r22741] Purpose:
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access

Description:
    Daily test failed from the previous commit r22735. (koala , ember)
    Fixed failure due to not be able to read external-storage file from external test.

Tested: 
    jam (linux32-LE), koala-pp (linux64-LE)
2012-09-05 14:15:52 -05:00