Description:
- Added functions to query chunk information:
H5Dget_num_chunks(dset_id, fspace_id, *nchunks)
Gets the number of written chunks that intersect with the given
dataspace. However, in this version, the intersection is not
yet completed. Thus, the number of all written chunks will be
returned.
H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size)
Given a chunk's logical coordinates, returns the chunk's filter,
address, and size.
H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size)
Given a chunk's index, returns the chunk's logical coordinates, filter,
address, and size. The chunk belongs to a set of chunks that have
nonempty intersection with the specified dataspace. However, in
this version, the intersection is not yet completed, and the index
is of all the written chunks.
These functions comply with VOL.
- Fixed some oversights found in the library for the tests in chunk_info.c
to work correctly. The returned value from a callback function was not
checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate().
This oversight caused a callback function to continue iterating even though
it's supposed to stop.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
* commit '2e5cd3d2b2d953420252c80ab5e32ac95ac0c5b3':
Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* commit '0b868668bac0d268120844adb9ad216a9a8e1395':
Changed the directory name left out from the previous commit.
Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
* commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb':
Updated h5trav.c to emit output that doesn't require ddl changes for map support.
Fixed Map API CMake option
Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.
Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
Added the map (H5M) API
* commit '5fe1216a4e6af8feef0551f7bece8a0e193310a9':
Fix return type for H5Sselect_intersect_block().
Updated H5TRACE macro.
Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
* commit '905d40aa6f6eb603c5507e7967130760e3a2e43c':
Fix return type for H5Sselect_intersect_block().
Updated H5TRACE macro.
Add H5Sselect_shape_same and H5Sselect_intersect_block API routines, along with tests and minor cleanups and refactorings.
* commit '363217073750d07e0eeb0aac2b404a799fda9f7a':
Update COPYING file. Remove hdfs from list of vfds for check-vfd testing as it is read-only.
Fixed the MANIFEST
* commit 'f97e11e7635a0cd8728d4604ca5dceb3925ba44c':
Update comment and check for strtoumax.
Modify CMakeLists.txt file for renamed h5tools_test_utils files.
Add HD to string functions. Switched strtoul to strtoumax in H5FDs3comms.c. Removed unused functions and variables in s3 and hdfs TestH5Pfapl*.java. Update Copyright headers.
Squashed commit of the following:
* commit '3768566139df18928aa29ece0eff3010b224633b':
Add release notes.
Correct hid_t error value to H5I_INVALID_HID in tests related to libver_bounds.
Fix for HDFFV-10808 H5Pset_file_space_strategy succeeds when using H5Pset_libver_bounds v18,v18. Fails file creation when non-default free-space info is set in fcpl and the library version high bound is less than v110 because free-space info message is introduced in library release v110.
Fails file creation when non-default free-space info is set in fcpl and the library version
high bound is less than v110 because free-space info message is introduced in library release v110.
* commit '35fd0ec8ceffe96cee352187154da15c967fb990':
Updated H5Tcopy() to get the dataset's datatype through the VOL when that is passed in as the object ID.
Fix fortran test and test library linking
Update GCC 6 & 7 flags for CMake builds
Move -Wnormalized down into GCC 6.x flags
Put the memcpy overlap check back into H5MM.
Fixed the heap overflow in t_filters_parallel
Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.
Add lib dir for testing plugins
Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings.
Add H5_HLDLL prefix for windows link
HDFFV-10805 cleanup examples and test code
Fix minor typo in H5S_select_iter_release
Add missing fortran mods
HDFFV-10805 Fix test of library libinfo
Cleanup possible CMake target conflicts
Correct CMake issues
* commit '2e973f7e12301975f9d8dfdd5534682525554e77':
Fix minor typo in H5S_select_iter_release
Fix memory leak in objcopy test after H5Aread of vlen data
* commit '6a1e9a1fbe9606d0dd3452092cab17794e131e64':
Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
* commit '712a2a13d8add828d053135a172abb2e819d59ad':
Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
Fix misc. typos, etc. from code review
New hyperslab selection routines and new public selection iterator routines.
* commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda':
Fix release notes based on feedback from pull request.
Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things
Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
* commit '08b009cc4ab2a8d8d289697d6d4688c0e5c53c6e':
Clean up if-else chain.
Remove thread-local copy of hyperslab operation generation value.
Core changes to selection code from the hyperslab_updates branch.
* commit 'e66bf948a7acba0ddc76239f6d02f17c8b10eb0f':
Fix for split VFD and file cleanup when testing H5Fis_hdf5 and H5Fis_accessible in tfile.c.
Improvements to the H5Fis_accessible() and H5Fis_hdf5() tests in tfile.c. * General code tidying. * Expanded tests to work with multi-file VFDs.
