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841 Commits

Author SHA1 Message Date
Allen Byrne
973aebe25f Add debug trace commands 2017-05-19 11:35:07 -05:00
Allen Byrne
71c223c082 Move execeutable command after declaration 2017-05-17 13:09:13 -05:00
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types 
Create variables just for diff_array function
Whitespace updates
 2017-05-16 15:58:17 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term 
Test is another dataset
 2017-05-15 12:33:58 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change 
Mostly tabs to spaces
Remove Modifications comments
 2017-05-09 16:52:05 -05:00
Allen Byrne
5263bc9029 HDFFV-10186 Whitespace changes 
Mostly replacing tabs with spaces
Removed empty mod sections
 2017-05-09 10:41:00 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Quincey Koziol
101fa7af8e Cleanups and normalizations against incoming page_buffering changes. 2017-02-19 18:28:52 -08:00
Allen Byrne
d1292691c4 HDFFV-9875 enable static pdb and cleanup exports 2017-02-03 12:41:30 -06:00
Allen Byrne
177c050891 HDFFV-9875 Fix target exports and add static tools pdb files 2017-02-02 12:09:10 -06:00
Allen Byrne
be260bbf75 Add goto error for dataset read failure. Fixed comments 2017-01-17 09:55:15 -06:00
Allen Byrne
e1bcae8a6a Update cmake min version and cmake command convention 2017-01-10 17:10:03 -06:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Dana Robinson
122819fec3 Merge pull request #48 in HDFFV/hdf5 from HDFFV-9407-h5dump-fails-to-print-full-precision to develop 
Merged Kimmy's fix (still needs a test).

* commit 'f76c3b56e1ccf81b16225fa6935adb45ac6d2f38':
  fix the issue of h5dump fails to print full precision
 2016-12-07 16:17:45 -06:00
Quincey Koziol
bb6cb6adb0 Code style and warning cleanups, from revise_chunks branch. 2016-11-06 12:08:19 -08:00
Allen Byrne
3ee36553b9 Add support for namespace and add tools to binaries config 2016-10-14 11:22:22 -05:00
kmu
f76c3b56e1 fix the issue of h5dump fails to print full precision 2016-09-27 14:04:19 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description: 
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-08-13 04:23:53 -05:00
Allen Byrne
1494413413 [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in h5diff_array. 
Also format function block in h5diff_attr to eliminate excessive whitespace
 2016-08-01 12:26:41 -05:00
Quincey Koziol
bb19817c9f [svn-r30189] Description: 
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-07-17 19:18:42 -05:00
Quincey Koziol
83724bd787 [svn-r30113] Description: 
Clean up warnings (from 2774 -> 1560, with my standard debug build)

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-28 16:53:48 -05:00
Quincey Koziol
d3396a7953 [svn-r30075] Description: 
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-14 18:07:03 -05:00
Allen Byrne
a5b595e020 [svn-r29889] HDFFV-9775: Add enable-error-stack to tools lib and refactor h5repack error handling. 2016-05-04 13:15:57 -05:00
Allen Byrne
3764d69e9e [svn-r29885] Fix memory leak when one dataset is vlen. 2016-05-04 11:39:28 -05:00
Allen Byrne
74f3326a67 [svn-r29862] Convert source list names from *_SRCS to *_SOURCES. 
Add/convert most tools to use new HDF5_TOOLS_DIR instead of HDF5_TOOLS_SRC_DIR CMake VAR.
 2016-05-04 10:06:05 -05:00
Allen Byrne
7fe0324fc4 [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
 2016-04-11 08:45:33 -05:00
Larry Knox
921b68afa7 [svn-r29678] Revert r29672 changes to h5diff. 
Tested h5committest.new
 2016-04-09 13:48:43 -05:00
Allen Byrne
1a5ee65d50 [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 2016-04-08 12:43:59 -05:00
Dana Robinson
5a9a9e8f0e [svn-r29534] Normalization w/ revise_chunks in preparation for big merge. 
tools directory

Also fixes a minor Java test output error.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java, Fortran, & C++
 2016-03-23 12:42:06 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Allen Byrne
d0444d4f2b [svn-r29261] HDFFV-9241: Print fill value as "DEFAULT" instead of value 0 2016-03-03 10:27:48 -05:00
Allen Byrne
f0a7f5978e [svn-r29257] HDFFV-9705: h5dump should not print filters or allocation time info for VDS files 2016-03-03 08:56:44 -05:00
Allen Byrne
8538eedde3 [svn-r29234] Fix H5 LIB OPTIONS macro for correct ARGN support 2016-02-29 16:24:31 -05:00
Allen Byrne
a1617b7cdb [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on command line. 
Tested: java_merge DT
 2016-02-28 12:58:37 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump 
includes new data files
 2016-02-23 15:23:46 -05:00
Dana Robinson
7511d8b469 [svn-r29179] Revert of 29177 which breaks the autotools build. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
 2016-02-22 15:32:01 -05:00
Allen Byrne
910d420409 [svn-r29177] HDFFV-9654: add VDS options to h5dump 2016-02-22 11:57:07 -05:00
Larry Knox
b3426914a8 [svn-r28669] Changes to correct errors found with -ansi flag. 
h5tools_dump.c
    Removed 3 lines commented out with //.
h5_vds-percival-unlim.c
    Changed C++-style comment to C-style comment.

Tested with h5committest.new.
 2015-12-15 15:52:12 -05:00
Quincey Koziol
cd49e8a2ab [svn-r28025] Description: 
Switch 'int' flag variables to booleans.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & paralel
    (too minor for h5committest)
 2015-10-10 21:42:20 -05:00
Quincey Koziol
d3c6b4ad72 [svn-r27848] Description: 
Clean up warnings and some normalization against trunk.

Tested:
    McaOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-09-21 19:21:18 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description: 
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2015-09-20 21:18:45 -05:00
Dana Robinson
d90e4acfa7 [svn-r27801] Minor warning fixes in the tools. 
Tested on: jam (too minor for h5committest)
 2015-09-16 10:23:16 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
db8e289abe [svn-r27632] Description: 
Revert changes to pass file pointer to selection serialize/deserialize
routines.  Also patch back in some changes that were merged out in the
previous merge w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
 2015-08-31 16:58:15 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description: 
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
 2015-08-31 15:14:57 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges. 
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
 2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler. 
tested: h5committest
 2015-08-31 13:49:17 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch. 
Tested: ummon
 2015-08-27 12:06:54 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library. 
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
 2015-08-24 15:19:39 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure. 
Tested: h5committest
 2015-08-17 16:12:03 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk. 
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
 2015-08-14 14:58:54 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk. 
Tested: h5committest --PASSED--
 2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code. 
Tested: local linux with CMake
 2015-08-05 16:01:07 -05:00
Neil Fortner
5065c139c7 [svn-r27397] Merge revisions 27255 through 27393 from trunk to vds branch. 
Tested: ummon
 2015-07-15 15:33:50 -05:00
Scot Breitenfeld
2c897f41c0 [svn-r27378] svn merge -r27326:27377 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-14 10:34:45 -05:00
Allen Byrne
8bbe712961 [svn-r27364] Add Mac Framework support 2015-07-09 11:56:16 -05:00
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Allen Byrne
48e1bbb0f8 [svn-r27252] Fix whitespace 2015-06-19 10:57:38 -05:00
Allen Byrne
7fdb38eb6f [svn-r27239] Add function prototype for local function 2015-06-18 08:52:52 -05:00
Allen Byrne
cf7c5123cb [svn-r27238] Add function prototype for local function 2015-06-18 08:52:35 -05:00
Dana Robinson
fb27787c2a [svn-r27222] Merge of r27035-27221 from the trunk. 
Tested on 64-bit linux VM:
    Serial: C++ and Fortran 2003
    Parallel: Fortran
 2015-06-17 06:48:34 -05:00
Scot Breitenfeld
85bcb77904 [svn-r27221] Reworked Fortran autools REAL KIND detection. 2015-06-16 16:47:00 -05:00
Allen Byrne
78e128c544 [svn-r27195] Add h5dump cmake tests and files. 
Add tools gen cmake files
move testfiles for pbits to subdir as well as vds

Tested: local linux
 2015-06-12 16:29:20 -05:00
Dana Robinson
aa4e3e3985 [svn-r27191] Merged r26781 to r27185 from trunk 
Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2
    (C++ and Fortran 2003 also tested)
 2015-06-11 14:18:52 -05:00
Scot Breitenfeld
6c4e3759f5 [svn-r27187] svn merge -r27135:27186 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-10 14:23:09 -05:00
Scot Breitenfeld
f2d14c76b8 [svn-r27186] added fix for jam with promoted reals and integers 2015-06-10 14:15:08 -05:00
Mohamad Chaarawi
b9f2a18b5a [svn-r27185] fix more instances where both mpi is_initialized and is_finalized need to be checked before making any MPI calls. 
tested with h5committest.
 2015-06-10 12:57:32 -05:00
Scot Breitenfeld
62401ac7c6 [svn-r27167] more DT fixes 2015-06-09 12:05:09 -05:00
Scot Breitenfeld
32703c9fc5 [svn-r27164] various bug fixes for DT 2015-06-08 16:13:15 -05:00
Scot Breitenfeld
8641814c4e [svn-r27154] fixed issue with mis-matching long double between Fortran and C 2015-06-05 17:17:13 -05:00
Scot Breitenfeld
043173a689 [svn-r27151] fixed __float128 errors 2015-06-04 15:26:02 -05:00
Scot Breitenfeld
4d500d4902 [svn-r27140] fixed interger*16 support 2015-06-03 09:13:58 -05:00
Scot Breitenfeld
f486fe1a49 [svn-r27137] svn merge -r27115:27135 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-06-02 09:46:51 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format: 
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
 2015-06-01 14:38:09 -05:00
Scot Breitenfeld
52e5579fba [svn-r27122] removed dependency on generatored fortran source code 2015-05-28 11:53:15 -05:00
Scot Breitenfeld
b1cf507c6d [svn-r27116] svn merge -r26937:27115 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-05-27 17:12:43 -05:00
Scot Breitenfeld
244784ab2c [svn-r27115] Moved testing KINDs and SIZEOFs to configure. 2015-05-27 17:07:18 -05:00
Mohamad Chaarawi
cea93c4a37 [svn-r27111] move undef of __attribute__ back to private and remove its usage from public routines. 2015-05-26 09:23:27 -05:00
Dana Robinson
984ecb72c2 [svn-r27038] Merge of r26393-27031 from the trunk. 
Tested on 64-bit linux VM w/ C++ and Fortran 2003
 2015-05-07 16:05:14 -05:00
Scot Breitenfeld
5e6d18e5be [svn-r26869] removed the --enable-fortran2003 option, it is now just --enable-fortran 2015-04-21 13:33:25 -05:00
Scot Breitenfeld
0cc9b0c79f [svn-r26825] Added include for preprocessing fortran files with configure definitions 2015-04-16 13:36:34 -05:00
Allen Byrne
11efaf4ff7 [svn-r26798] Fix other storage layout whitespace 2015-04-13 15:47:03 -05:00
Allen Byrne
26e709edc6 [svn-r26794] Fix formatting for selection. Irregular reuses blocks and points for datasets however indentation after line breaks are an issue. 2015-04-13 15:15:00 -05:00
Neil Fortner
6a27582a44 [svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch. 
Tested: ummon
 2015-04-10 18:00:48 -05:00
Larry Knox
3032f3adf3 [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. 
Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths.

Tested with h5committest.
 2015-04-02 16:07:53 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework 
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
 2015-03-30 13:55:21 -05:00
Mohamad Chaarawi
01093ad350 [svn-r26649] squish warnings. 2015-03-30 10:12:49 -05:00
Quincey Koziol
6f75afd15e [svn-r26635] Description: 
Bring r26651 from autotools_rework branch to trunk:

    Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    Linux/32 2.6.18 (jam) w/serial & parallel
    (Daily tested on branch for 2+ days)
 2015-03-27 19:37:08 -05:00
Allen Byrne
e270981617 [svn-r26611] Remove complete section of VIRTUAL output. 2015-03-27 09:23:24 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature. 
Tested: local linux
 2015-03-25 17:08:46 -05:00
Elena Pourmal
1180e6f96d [svn-r26570] Commented lineis that print extra "VIRTUAL" keyword and blank lines for demo on 3/25/2015. Allen will need to review it. 2015-03-24 23:08:59 -05:00