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1642 Commits

Author SHA1 Message Date
Allen Byrne
307749cc71 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '55e87e5b86aacbb37c57614cd2e869541291caad': (51 commits)
  Correct Windows build.
  Refactor allocating & releasing pass through wrapper objects.
  Fix typo
  Remove duplicated comment.
  Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector.
  Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value.
  Correct "make check-vol" regression test target.
  Switch H5VL_class_value_t from enum to unsigned integer
  Add support for "make check-vol", along with a few minor cleanups, etc.
  Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors.   Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
  Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory.
  Add pass-through VOL connector
  Update API tracing info for VOL functions and regenerate trace macros for VOL API calls.
  Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks.
  Add using FAPL from h5_fileaccess() to more tests.
  Remove unused test for unimplemented routine.
  Switch loc_params to VOL callbacks to pass struct by pointer instead of by value.
  Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object.
  Revert some of the changes to support the original property list value of metadata read attempts.
  Add VOL connector info to the flie access property list returned from H5Fget_access_plist().  Also, other misc. cleanups, etc.
  ...
 2018-12-05 14:25:58 -06:00
Allen Byrne
e3e24a2989 HDFFV-10632 - split stderr and stdout in cmake 2018-12-03 09:35:59 -06:00
Quincey Koziol
8c606f586e Correct "make check-vol" regression test target. 2018-11-28 22:54:46 -06:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
Larry Knox
7bf6e98bd9 Move wait_H5init.cmake up to config/cmake. 2018-11-20 12:09:14 -06:00
Larry Knox
8544aae3e8 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-11-20 11:58:27 -06:00
Larry Knox
720bbdfe61 Changes to CMake code to pause cmake/ctest, waiting for batch jobs to 
run and finish.
 2018-11-20 11:03:58 -06:00
Allen Byrne
3dc4055aaf Fix typo 2018-11-19 11:41:11 -06:00
Allen Byrne
4bc283a0f2 Standardize script 2018-11-19 11:03:42 -06:00
Allen Byrne
d9fbacff90 add max count to options file 2018-11-19 11:02:20 -06:00
Allen Byrne
a26aedce04 Check PARALLEL_LEVEL maximum 2018-11-19 10:03:18 -06:00
Larry Knox
38f7e3c86b Really don't run parallel tests without option specifying script. 2018-11-14 11:35:36 -06:00
Larry Knox
6cbd463d41 Add script and changes to wait for H5Tinit.c 
Add more sample batch scripts, specifically for sbatch, not for knl
cross compile.
Don't run parallel tests when no parallel test script is configured in
HDF5options.cmake.
 2018-11-14 11:19:28 -06:00
Allen Byrne
b9b89705c3 Correct extlib depends 2018-11-06 15:10:55 -06:00
Allen Byrne
e753904d0b Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'e6545faa5699aae4d5dca23ed40e3080fa9dc72d':
  Update HDF5-Examples version to be included in CMake-* tar/zip files.
  Snapshot version 1.11 release 3.
 2018-11-05 16:57:51 -06:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Allen Byrne
ae0f4a23c0 Fix typo in whitespace area 2018-10-29 15:52:39 -05:00
Larry Knox
b24259ed8c Add files and changes to cross compile with CrayLinuxEnvironment and run 
ctest tests with a batch job on knl compute nodes.
 2018-10-29 14:24:08 -05:00
Allen Byrne
096279caf7 HDFFV-10608 Move toolchain files into a subfolder 2018-10-22 16:08:52 -05:00
Allen Byrne
164bae2439 TRILAB-36 add option for test script batch command 2018-10-22 15:39:03 -05:00
Allen Byrne
7e00924d1b EED-258 Add modules uses toolchain files 2018-10-18 14:44:27 -05:00
Allen Byrne
42c8dd66d7 Correct quote char 2018-10-11 14:34:34 -05:00
Allen Byrne
4659e43a6b HDFFV-10603 fixup cmake usage 2018-10-11 12:24:15 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
299852b6b5 Update examples version 2018-10-04 16:59:22 -05:00
Allen Byrne
4442b5b743 TRILABS-34 improve cross compile with emulator 2018-10-04 16:06:31 -05:00
Allen Byrne
a5301ee6b8 TRILABS-34 Cleanup try_run 2018-10-04 15:34:29 -05:00
Allen Byrne
9c39016e1d TRILABS-34 avoid try-run output capture 2018-10-04 14:00:49 -05:00
Allen Byrne
2a95ab5acb TRILABS-21 add toolchain related info and files 2018-10-04 11:40:33 -05:00
Allen Byrne
284cb8ffc0 TRILABS-21 Add intel compiler support 2018-10-04 10:42:44 -05:00
Allen Byrne
3209d1278f TRILAB-21 Intel flags 2018-10-02 18:13:21 -05:00
Allen Byrne
d26bb4d26c HDFFV-10594 - mac must be space separated 2018-09-26 15:12:44 -05:00
Allen Byrne
5527dbfac2 Add extra path option for build location 2018-09-26 12:05:43 -05:00
Allen Byrne
01e40b31fe Use relative RPATH paths 2018-09-26 09:40:03 -05:00
hdftest
e2f6e6f62f Snapshot version 1.11 release 2. 2018-09-20 14:54:10 -05:00
Allen Byrne
1d2beee51f HDFFV-10569 Add unsupported option notes to docs 2018-09-04 11:43:15 -05:00
Allen Byrne
fed65c435a Move muti-config dir setting to root process 2018-08-31 19:01:43 -05:00
Allen Byrne
a87f597d89 Correct name of osx installer 2018-08-23 09:40:22 -05:00
Allen Byrne
0483f47192 Use project vars 2018-08-22 14:10:38 -05:00
Allen Byrne
9d1dae5daf Fix for packaging prefix in examples 2018-08-22 12:13:53 -05:00
Allen Byrne
732aae11c5 HDFFV-10547 develop needs 1.12 default option 2018-08-20 15:07:19 -05:00
Allen Byrne
b33fdb17c3 HDFFV-10547 requires updated examples version 2018-08-20 11:25:09 -05:00
Allen Byrne
ae7da889ec HDFFV-10552 Add missing HDF5_USE_110[2]_API_DEFAULT option 2018-08-17 14:48:43 -05:00
Allen Byrne
454b04176a Update cmake warnings to match the autotools files better 2018-08-16 15:45:31 -05:00
Jordan Henderson
70de0b18e3 Merge pull request #1167 in HDFFV/hdf5 from ~JHENDERSON/hdf5:bugfix/MPI2_only_fixes to develop 
* commit '9aa2eaeb9ed9c94f63973cb55f13de256558497c':
  Add Autotools and CMake checks for big I/O MPI-3 functions
  Add hdf5settings section for parallel compression status in CMake builds
  Switch to CheckSymbolExists in CMake
  Add configure check for MPI_Mprobe and MPI_Imrecv functions
 2018-08-02 09:25:00 -05:00
Jordan Henderson
9aa2eaeb9e Add Autotools and CMake checks for big I/O MPI-3 functions 2018-07-31 13:42:19 -05:00
Jordan Henderson
5e138dc1e9 Add hdf5settings section for parallel compression status in CMake builds 2018-07-31 10:45:43 -05:00
Allen Byrne
496372dc18 HDFFV-10508 more config fixes 2018-07-30 17:10:00 -05:00
Allen Byrne
323635f2b5 HDFFV-10508 correct sizeof 2018-07-30 16:31:39 -05:00
Allen Byrne
63fa8acbac Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'b6d1e9abdc2571f6d7b56ebab26a245d2f036516':
  Fixed typo in H5_H5CONFIG_F_IKIND name
 2018-07-30 16:30:51 -05:00
M. Scot Breitenfeld
8f79022bc6 Fixed typo in H5_H5CONFIG_F_IKIND name 2018-07-30 16:17:27 -05:00
Allen Byrne
2770f0bf9f HDFFV-10508 pubconf changes found 2018-07-30 15:46:42 -05:00
Larry Knox
ab31eafa2e Correct typo in comment in config/gnu-flags. 2018-07-24 15:21:55 -05:00
Larry Knox
64d8a67943 Merge pull request #1143 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '3c6654921000a8659276f1fcb32dd0ada1353558':
  Apply Cygwin pathches from Marco Atzeri. Commit Joe Lee's typo corrections for src/H5MF.c.
 2018-07-18 17:15:42 -05:00
Larry Knox
3c66549210 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2018-07-18 17:06:59 -05:00
Larry Knox
892252106a Apply Cygwin pathches from Marco Atzeri. 
Commit Joe Lee's typo corrections for src/H5MF.c.
 2018-07-18 17:01:53 -05:00
Allen Byrne
72931507f9 ifdef around std flag for cygwin 2018-07-18 09:39:13 -05:00
Allen Byrne
47780cb4e0 TRILAB-31 Working locally 2018-07-16 13:01:53 -05:00
Allen Byrne
792771d52a Update Java util lib, Refactor H5D write VL to match read 2018-06-27 17:53:47 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" 
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
 2018-06-24 18:04:23 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
hdftest
afe28b7607 Snapshot version 1.10 release 3 (snap2) 2018-06-03 21:53:30 -05:00
hdftest
f8690c40b9 Updated version to 1.10.3-snap2 2018-05-29 15:16:31 -05:00
M. Scot Breitenfeld
e8eb130ce6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-23 17:15:13 -05:00
Allen Byrne
0ce9d125f6 Update support link 2018-05-23 14:37:30 -05:00
M. Scot Breitenfeld
4ddd7704b6 Merge branch 'develop' into hdf5_1_10.sync 2018-05-22 11:48:44 -05:00
Allen Byrne
715ae9c865 Correct attribute location 2018-05-22 10:43:01 -05:00
Allen Byrne
955201531f Fix soversion 2018-05-16 11:25:07 -05:00
M. Scot Breitenfeld
88e0c3e748 Merge branch 'develop' into hdf5_1_10.sync 2018-05-10 09:06:35 -05:00
M. Scot Breitenfeld
b69bd0771e Merge branch 'develop' into hdf5_1_10.sync 2018-05-08 17:17:45 -05:00
Allen Byrne
6fcf4c9aeb Remove APPEND 2018-05-03 15:41:50 -05:00
Allen Byrne
1d1333ed6b Revert to old style for LINK_FLAGS gen expr not working 2018-05-03 11:57:30 -05:00
Allen Byrne
01a77cbfb1 LINK_FLAGS must be separate property sets 2018-05-03 10:44:57 -05:00
Allen Byrne
6dd91d206f TRILABS-19 Link flags need - character 2018-05-02 10:04:14 -05:00
Allen Byrne
76d0cc0ca9 TRILABS-19 Refactor fortran properties 2018-04-30 09:03:29 -05:00
hdftest
0c91e6b922 Updated version to 1.10.3-snap1 2018-04-30 08:16:49 -05:00
Allen Byrne
80afe46e70 TRILABS-19 revert to previous method 2018-04-27 13:04:40 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Allen Byrne
bc9a773b99 TRILABS-20 Fix fortran configure during fix of CXX configure 2018-04-24 17:22:55 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
df83d78134 HDFFV-10444 fix so numbers and merge java test changes 2018-04-10 10:52:18 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
lrknox
8ff01c5fb7 Update config/lt_vers.am so that the .so numbers for the hdf5_1_10 
snapshots are not behind the 1.10.2 release.

HDF5 version 1.10.2 released on 2018-03-29
 2018-04-03 14:53:25 -05:00
Allen Byrne
73e2748547 Correct Readme VS version merge from develop 2018-03-22 13:09:24 -05:00
Allen Byrne
ef3e20d988 Correct if block typo 2018-03-22 13:08:04 -05:00
Allen Byrne
60eafb9f6c Correct VS version for readme 2018-03-22 13:06:56 -05:00
lrknox
aa199c893f Updated version to 1.10.3-snap0 2018-03-14 16:19:26 -05:00
M. Scot Breitenfeld
48eaac2029 Merge branch 'develop' into hdf5_1_10_merge 2018-03-12 12:07:51 -05:00
M. Scot Breitenfeld
a5d95ec083 Merge branch 'develop' into hdf5_1_10_merge 2018-03-09 16:57:54 -06:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Allen Byrne
3712738877 HDFFV-4359 Add C,HL,CXX files 2018-03-08 15:54:40 -06:00
M. Scot Breitenfeld
496af1be89 Needs to sync with lib version and Sencode. 2018-03-07 15:49:14 -06:00
Jerome Soumagne
9364df1c6d Fix CMake build type if none was specified to be cached 
Restrict CMAKE_BUILD_TYPE to default ones
 2018-03-02 13:50:23 -06:00
Allen Byrne
d4e7beb9ee Incr CMake min, add missing test, rework test CMake script 2018-02-27 16:39:10 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
hdftest
fa3a845d49 Snapshot version 1.10 release 2 (snap9) 2018-02-11 15:54:22 -06:00
Allen Byrne
5b4c5b92d8 HDFFV-10403 fix soname 2018-02-08 15:50:38 -06:00
Allen Byrne
83211cf8f6 HDFFV-10403 Fix soname setting 2018-02-08 15:46:13 -06:00
Allen Byrne
16e649fa0d HDFFV-10398 merge from develop improve CMake code 2018-01-30 16:30:17 -06:00
Allen Byrne
b005c5653e HDFFV-10398 fix detection of repeat checks 2018-01-30 16:22:18 -06:00
Allen Byrne
dc384f474d HDFFV-10398 - avoid ubsan crashes 2018-01-30 14:47:43 -06:00
Allen Byrne
6aee1578c3 HDFFV-10398 msvc: use /W0 rather than /w 2018-01-30 12:46:23 -06:00
Allen Byrne
98f8fd9603 HDFFV-10398 Suppress VS 2015 assertion failure popup during try_run 2018-01-30 12:43:01 -06:00
Allen Byrne
bd7bc909ed HDFFV-10398 Honor CMAKE_MODULE_PATH when including check modules 2018-01-30 12:05:30 -06:00
Allen Byrne
d40f2039e7 Update CMake usage 2018-01-29 12:52:20 -06:00
Allen Byrne
2e387d1bf6 Update refences to CMake usage 2018-01-29 12:43:54 -06:00
Allen Byrne
f837afc875 Update reference files for CMake options 2018-01-29 12:40:52 -06:00
Allen Byrne
8b658fb747 Merge windows compile fix from develop 2018-01-29 10:31:12 -06:00
Allen Byrne
468fbc36f1 Fix windows compile errors abstract out common settings 2018-01-29 10:27:32 -06:00
Allen Byrne
79f2f73379 Fix ext lib references 2018-01-25 16:58:36 -06:00
Allen Byrne
3ab1a07368 Fix missing ext libs references 2018-01-25 16:54:28 -06:00
Allen Byrne
233afe3b6f HDFFV-10385,10392,10393 merge from develop 2018-01-22 11:22:27 -06:00
Allen Byrne
f22d872670 HDFFV-10385 some platforms need this var 2018-01-22 11:09:58 -06:00
Allen Byrne
7e33ee85b8 HDFFV-10385 test OUTPUT_NAME var for mac 2018-01-22 08:55:30 -06:00
Allen Byrne
a87cf25f2d HDFFV-10385 Correct name of var 2018-01-22 07:59:12 -06:00
Allen Byrne
608a71200d HDFFV-10385 rename vars and macros 2018-01-19 10:49:17 -06:00
Allen Byrne
0f5ada2e08 HDFFV-10385 Refactor out CMAKE_BUILD_TYPE usage 2018-01-18 16:55:01 -06:00
Allen Byrne
6ca95c512a HDFFV-10385 rework java names 2018-01-17 10:27:00 -06:00
Allen Byrne
19c18e44ed Revert CMAKE_BUILD_TYPE for matches - need to redesign 2018-01-12 14:17:04 -06:00
Allen Byrne
9b5bd45740 HDFFV-10385 mult-config builders need a folder 2018-01-10 14:39:48 -06:00
Allen Byrne
9956b151e0 HDFFV-10385 multi-config builders need folder set 2018-01-10 14:35:00 -06:00
Allen Byrne
5b4b465832 Fix typo 2018-01-10 13:04:06 -06:00
Allen Byrne
fa2e3b4554 HDFFV-10385 correct platform issues 2018-01-09 16:38:54 -06:00
Allen Byrne
3e0c6530dc HDFFV-10385 fix platform errors 2018-01-09 16:26:12 -06:00
Allen Byrne
be42e04791 HDFFV-10385 refactor CMAKE_BUILD_TYPE usage 2018-01-09 09:56:28 -06:00
Allen Byrne
49479589d3 HDFFV-10385 Refactor use of CMAKE_BUILD_TYPE 2018-01-08 16:04:46 -06:00
Allen Byrne
ca327ba1c4 Merge pull request #848 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10 
* commit '58a475d3fabba89a9fed2a22d3f0851c9933f650':
  Fix link_libs and static CRT fortran
 2018-01-08 12:57:33 -06:00
hdftest
9b059d7b28 Snapshot version 1.10 release 2 (snap8) 2018-01-07 22:34:20 -06:00
hdftest
7efa31d45e Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10) 
* commit 'efa2a470c9d8cf2d584f6b22f5b80cd6687887d0': (36 commits)
  Merge fix
  HDFFV-9724 1_10 branch has a different number
  HDFFV-9724 Merge vds prefix from develop
  reverted changes from sync
  Snapshot version 1.11 release 1
  Fix valgrind issues
  HDFFV-9724 init var to null
  HDFFV-9724 add valgrind ENV
  Fix memory leak due to addition of FORMAT check loop
  HDFFV-9724 prefix of 0 length should be null value
  HDFFV-9724 Corrected files and verified tests
  Add library INTERFACE and MPI to tools
  Increase maximum number of retries for h5watch tests.
  Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop"
  Fix library interface commands, add missing JNI
  Add HD prefix
  HDFFV-9724 Remove VDS file cache functionality
  Removed incorrect MPI text
  Par example needs to link with mpi libs
  Because of MPI requirements in library ALWAYS add include path
  ...
 2018-01-06 16:56:57 -06:00
Allen Byrne
58a475d3fa Fix link_libs and static CRT fortran 2018-01-05 14:30:11 -06:00
hdftest
bee148a995 Snapshot version 1.11 release 2 2018-01-05 10:09:10 -06:00
M. Scot Breitenfeld
8712f3e231 synced with develop 2018-01-05 09:57:48 -06:00
hdftest
d01ad2a94a Snapshot version 1.11 release 1 2018-01-05 08:50:10 -06:00
Allen Byrne
17b8f0bb93 Fix valgrind issues 2018-01-02 09:39:09 -06:00
hdftest
2f7e94c9c0 Snapshot version 1.10 release 2 (snap7) 2017-12-31 10:42:57 -06:00
Allen Byrne
bd34c9e455 HDFFV-9724 Corrected files and verified tests 2017-12-28 16:49:50 -06:00
hdftest
98bf60f722 Snapshot version 1.10 release 2 (snap6) 2017-12-24 15:28:56 -06:00
lrknox
86d8a4c267 Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop" 
This reverts commit b1223dd653, reversing
changes made to b25f123f5f.
 2017-12-22 12:28:24 -06:00
Allen Byrne
925f3c9b54 Because of MPI requirements in library ALWAYS add include path 2017-12-20 13:10:34 -06:00
Allen Byrne
bbcf9f31c6 Update MPI commands 2017-12-20 12:35:29 -06:00
hdftest
36b9818ecc Snapshot version 1.10 release 2 (snap5) 2017-12-17 15:33:36 -06:00
Allen Byrne
ba714e6820 HDFFV-9724 Add H5LS prefix test with ${ORIGIN} 2017-12-13 15:08:04 -06:00
hdftest
ad85e417cf Snapshot version 1.10 release 2 (snap4) 2017-12-11 08:58:41 -06:00
M. Scot Breitenfeld
8d462d5102 Merge branch 'develop' into hdf5_1_10 2017-11-28 11:42:45 -06:00
Allen Byrne
b4b3041839 Update macro 2017-11-27 13:08:07 -06:00
Allen Byrne
c3249ecd79 Update macros 2017-11-27 13:06:10 -06:00
hdftest
9dd1abc0d8 Snapshot version 1.10 release 2 (snap3) 2017-11-20 10:40:33 -06:00
Dana Robinson
cb235453a9 Changed ar to always use -cr instead of the autotools default 
of cru.
 2017-11-15 14:24:59 -08:00
Dana Robinson
1ddb1a08f1 Merge pull request #772 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:ar_warning_fix to develop 
* commit 'a25366cc980695cebe40c2d471bfe5166dcb28a2':
  Fixed that annoying ar warning about -u being ignored.
 2017-11-14 13:05:25 -06:00