Commit Graph

20414 Commits

Author SHA1 Message Date
Jerome Soumagne
7b03a1c036 Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t * 2019-12-05 14:42:06 -06:00
David Young
60756183d9 Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to
structs containing those arrays.  Encapsulating the arrays in this way
makes it easier to write and think about pointers to these types, casts
to/from these types, etc.

An interesting side-effect that we probably should *not* rely on is
that the struct-encapsulation changes the alignment so that some GCC
warnings about casts that increase the alignment requirement of the
operand go away.  Warnings like that have to be taken seriously:  I will
add -Werror=cast-align to the default compiler flags so that they stop
the build quickly.

GCC warnings led me to some surprising casts in test/trefer.c. I found
that it was possible to make many simplifications after introducing the
struct-encapsulation that I described, above.

In test objcopy_ref `same_file` is assigned but never used.  Delete it.
2019-12-05 14:41:45 -06:00
Allen Byrne
4747e2f2ad Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'c7b3d6d6a5c1d376812e17c0ddb26f55334a2c59':
  Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
2019-12-05 09:30:11 -06:00
Dana Robinson
c7b3d6d6a5 Merge pull request #2072 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cpp_warning_disable to develop
* commit '1ad02a445920578654d257bb66aa1e8e7e368018':
  Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
2019-12-04 18:08:57 -06:00
Allen Byrne
4f74548f53 Add extra line 2019-12-04 17:00:45 -06:00
Allen Byrne
11825bc525 Adjust whitespace 2019-12-04 16:59:03 -06:00
Allen Byrne
d552e97eae Update h5ls help and rework dump_mem routines for attrs 2019-12-04 16:36:32 -06:00
Allen Byrne
cc2407257a Update create calls 2019-12-04 12:35:48 -06:00
Allen Byrne
8f9005570a Add debug compile option as comment 2019-12-04 12:24:53 -06:00
Allen Byrne
ba8f2f1174 Update reference calls 2019-12-04 12:24:53 -06:00
Allen Byrne
e994c9cb4a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'aa0b54e27e5d6f0b7c23fe5662d5c8f30898d7f4':
  Fixed missing blob callbacks in test VOL connectors.
  Add support for scalar dataspaces to H5Sproject_intersection.  Add checking for ank validity.
  Fix issues with using H5Pget_fill_value() with file datatypes retrieved from H5VLget_file_type().
2019-12-04 11:36:07 -06:00
Neil Fortner
aa0b54e27e Merge pull request #2064 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:vol_fillval to develop
* commit '28294070597c8a04c10e55a843dfe6dbae6ef04c':
  Fix issues with using H5Pget_fill_value() with file datatypes retrieved from H5VLget_file_type().
2019-12-04 11:35:58 -06:00
Neil Fortner
62b5de82e2 Merge pull request #2065 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:scalar_spi2 to develop
* commit 'ac1a8ab5fe7c58533e005fef94d3acb2d46f4b31':
  Add support for scalar dataspaces to H5Sproject_intersection.  Add checking for ank validity.
2019-12-04 11:33:43 -06:00
Dana Robinson
1ad02a4459 Yanked -Wc++-compat from the flags used to build the C library in both
the Autotools and CMake.
2019-12-04 00:49:52 -08:00
Dana Robinson
96429e48e3 Merge pull request #2070 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop
* commit '43c48fbadc994f740f63caeb5110442c79346501':
  Fixed missing blob callbacks in test VOL connectors.
2019-12-03 17:27:47 -06:00
Dana Robinson
43c48fbadc Fixed missing blob callbacks in test VOL connectors. 2019-12-03 15:14:57 -08:00
Allen Byrne
915184104b Add missing javadoc for new arg 2019-12-03 16:37:40 -06:00
Allen Byrne
7ad3d62a5c Update data output reference 2019-12-03 16:05:35 -06:00
Allen Byrne
12fd139e90 Update reference files and fix int as string 2019-12-03 14:43:05 -06:00
Allen Byrne
7c057f658a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'ca34de56cd336f58c4bcf4ac9e1460f898fba3c9':
  Add OAPL parameter to H5Rcreate_ APIs
  Fix failing test and retain semantics for chunk cache properties in non-chunked datasets
  Add two missing calls to H5I_dec_ref for new dapl_id
  Community-proposed fix
2019-12-03 12:35:02 -06:00
Jordan Henderson
ca34de56cd Merge pull request #2066 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit '874900d39561f97c0a41b7efc59686daa66df95e':
  Add OAPL parameter to H5Rcreate_ APIs
2019-12-03 11:32:55 -06:00
Jordan Henderson
874900d395 Add OAPL parameter to H5Rcreate_ APIs 2019-12-02 17:05:15 -06:00
Chris Hogan
4b2560fa81 Merge pull request #2049 in HDFFV/hdf5 from ~CHOGAN/hdf5:chogan/issue_10934 to develop
* commit '3664cea5d6f87a7e8e708191f9cea36077424a80':
  Fix failing test and retain semantics for chunk cache properties in non-chunked datasets
  Add two missing calls to H5I_dec_ref for new dapl_id
  Community-proposed fix
2019-12-02 16:58:16 -06:00
Allen Byrne
8888cfd25c Update to new error text 2019-12-02 14:58:57 -06:00
Allen Byrne
929490f6bc Update reference files to latest output 2019-12-02 12:01:40 -06:00
Neil Fortner
ac1a8ab5fe Add support for scalar dataspaces to H5Sproject_intersection. Add
checking for ank validity.
2019-12-02 10:32:03 -06:00
Allen Byrne
7e92c2e3e5 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f':
  Fix missing free in H5T__ref_mem_read()
  Fix bugs in H5VL file comparison code.  Add short circuit success to H5VL_cmp_connector_cls().
  Implement file comparison VOL callback.  Other changes to allow references to work with non-native connectors.  There is a bug somewhere.
  Add support for point selections to H5S_select_project_intersection.
  Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
  Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
  Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
  H5R: fix H5Tconv to check for null references
  Trivial parameter renaming in VOL API calls.
  Move checking for zero offset in selection adjust calls to the selection callbacks.  This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
  Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust.  Implement "adjust_s" callback for all selection types.  Add range checking to H5Sselect_adjust().
2019-12-02 08:00:20 -06:00
Neil Fortner
0772b975d1 Merge pull request #2063 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:vol_file_cmp to develop
* commit '40b2658b4b266b4dc65ec3db2897e0aaf54f8e42':
  Fix missing free in H5T__ref_mem_read()
  Fix bugs in H5VL file comparison code.  Add short circuit success to H5VL_cmp_connector_cls().
  Implement file comparison VOL callback.  Other changes to allow references to work with non-native connectors.  There is a bug somewhere.
2019-11-30 18:44:02 -06:00
Neil Fortner
40b2658b4b Fix missing free in H5T__ref_mem_read() 2019-11-28 23:07:33 -06:00
Neil Fortner
ece625e3b6 Fix bugs in H5VL file comparison code. Add short circuit success to
H5VL_cmp_connector_cls().
2019-11-27 22:48:01 -06:00
Jerome Soumagne
648073ea8e Merge pull request #2059 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_nullref to develop
* commit '6b68cc352ffabb5fe997db1eb52216b3ee80e669':
  H5R: fix H5Tconv to check for null references
2019-11-27 22:31:18 -06:00
Neil Fortner
e23e67798a Implement file comparison VOL callback. Other changes to allow
references to work with non-native connectors.  There is a bug
somewhere.
2019-11-27 16:50:01 -06:00
Neil Fortner
2829407059 Fix issues with using H5Pget_fill_value() with file datatypes retrieved
from H5VLget_file_type().
2019-11-27 14:52:30 -06:00
Neil Fortner
33a5acf8a5 Merge pull request #2050 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:point_spi to develop
* commit 'ad2fbb022e096233444489e69b93343a4b7e9631':
  Add support for point selections to H5S_select_project_intersection.
2019-11-27 14:47:23 -06:00
Neil Fortner
ad2fbb022e Add support for point selections to H5S_select_project_intersection. 2019-11-27 14:45:53 -06:00
Jerome Soumagne
68852d726c Merge pull request #2057 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_get_file_id_native to develop
* commit 'f46494ffd8449fc610798c8af312362608029d3d':
  Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
2019-11-27 14:19:41 -06:00
Jerome Soumagne
f46494ffd8 Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
Remove H5F__get_file_id() and use only private routine instead
2019-11-27 14:17:08 -06:00
David Young
5e800bff9d Merge pull request #2062 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:revert-c99-designated to develop
* commit '0108072f7a746b809952d5cc560577f931b64f71':
  Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
  Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
2019-11-27 13:18:53 -06:00
David Young
0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
David Young
8fb9fb5d4d Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
This reverts commit f907b511d0.
2019-11-27 11:16:52 -06:00
Jerome Soumagne
6b68cc352f H5R: fix H5Tconv to check for null references
Valid for both deprecated and non-deprecated references

Update test
2019-11-26 15:50:08 -06:00
Neil Fortner
9f61c26927 Merge pull request #2045 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:select_adjust to develop
* commit '4e12984b77cdd7615843d94f8de8d54db27476ac':
  Move checking for zero offset in selection adjust calls to the selection callbacks.  This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
  Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust.  Implement "adjust_s" callback for all selection types.  Add range checking to H5Sselect_adjust().
2019-11-26 11:38:25 -06:00
Richard Warren
8a790fe85a Adds a new t_2Gio.c MPI test 2019-11-26 09:20:47 -05:00
Dana Robinson
5f3414e4d9 Merge pull request #2054 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_trivial to develop
* commit '9a93ecac522d9032efd9cdc39ff0550412e54565':
  Trivial parameter renaming in VOL API calls.
2019-11-25 23:23:52 -06:00
Allen Byrne
dcae4544a3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits)
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  ...
2019-11-25 18:21:14 -06:00
David Young
a8892bb42d Merge pull request #2055 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit 'f907b511d06612dafc7814a7c30f2f3d2b76d52b':
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
2019-11-25 17:33:54 -06:00
David Young
f907b511d0 Oops, remove more C99 designated initializers for VS 2010 compatibility. 2019-11-25 17:30:08 -06:00
Dana Robinson
9a93ecac52 Trivial parameter renaming in VOL API calls. 2019-11-25 15:30:04 -08:00
David Young
5c911d8baf Merge pull request #2030 in HDFFV/hdf5 from ~DYOUNG/vchoi_fork:add-werror-and-squash-some to develop
* commit '62208b056a09c01855fbac7f75146be58ad6bfe5': (44 commits)
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays.  Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc.
  ...
2019-11-25 16:58:27 -06:00
David Young
62208b056a Add an #include to get a function declaration. 2019-11-25 16:56:03 -06:00