Commit Graph

662 Commits

Author SHA1 Message Date
Allen Byrne
5425a571e0
Convert develop to v2.0.0 (#5006)
Switches previous 1.16/17/18 values to 2.0
2024-10-27 21:51:07 -07:00
Dana Robinson
7f1e49206d
Renamed COPYING to LICENSE (#4978)
This is where most people will expect to find license information. The
COPYING_LBNL_HDF5 file has also been renamed to LICENSE_LBNL_HDF5.
The licenses are unchanged.
2024-10-18 21:13:04 -07:00
Quincey Koziol
767282f68a
VOL refactor and cleanup (#4856)
Cleanup and prepare for thread-safety changes.

Big ideas:

* Wrap H5VL_class_t with H5VL_connector_t, so use of the class can be refcounted within the H5VL package, instead of relying on storing an ID within the H5VL_t struct and incrementing & decrementing the ID's refcount.
* Register H5VL_connector_t* for VOL connector IDs, instead of the H5VL_class_t*
* Stop other packages from rummaging around inside H5VL_connector_t and H5VL_object_t data structures, so that the H5VL package can change implementation details without coupled changes throughout the library

Small things:

* Simplified the coding for creating links
* Moved some routines into more logical locations
2024-10-03 12:19:33 -07:00
Allen Byrne
07756c87f5 Update develop to 1.18 API 2024-10-02 19:53:38 -05:00
Allen Byrne
f77b70859f
Rework Dynamic Analysis and sanitize testing (#4681)
* Ignore predetermined failing test and check pointer before use

* Rework Analysis process
2024-08-05 09:53:53 -05:00
Dana Robinson
9b5d9680af
Clean up Fortran __float128 configure-time checks (#4649)
* Always use DECIMAL_DIG instead of LDBL_DIG. This was controlled by
  an ifdef that is always true in C99 or greater

It's confusing to use float.h C constants as variable names in
configure.ac and the PAC_FC_LDBL_DIG macro.

* Directly compare MY_FLT128_DIG and MY_LDBL_DIG

* Make uniform across CMake and Autotools
* Don't export quadmath.h variables to H5pubconf.h
2024-07-15 07:38:13 -05:00
jhendersonHDF
773831f3cb
Add H5F_LIBVER_V116 to internal library version structures (#4619)
Also add H5F_LIBVER_V116 flag to Fortran wrappers
2024-07-02 09:26:05 -05:00
Scot Breitenfeld
dfc6295c1d
Fixed failures with xl compilers. (#4458)
* type cast constant

* fixed return types
2024-05-02 15:33:20 -05:00
Scot Breitenfeld
abf8b01f55
H5R Fortran wrappers and misc. H5R API/DOC updates (#4446)
- Add Fortran H5R APIs:
      h5rcreate_attr_f, h5rcreate_object_f, h5rcreate_region_f,
      h5ropen_attr_f, h5ropen_object_f, h5ropen_region_f,
      h5rget_file_name_f, h5rget_attr_name_f, h5rget_obj_name_f,
      h5rcopy_f, h5requal_f, h5rdestroy_f, h5rget_type_f

    - Fixed function H5Requal actually to compare the reference pointers

      Fixed an issue with H5Requal always returning true because the
      function was only comparing the ref2_ptr to itself.
2024-05-01 05:39:01 -07:00
Scot Breitenfeld
df9d2eafab
MPI type correction (#4268)
* corrected type for MPI_*_f2c APIs

* fixed return type of callback

* reset compilation flags of logical test program
2024-03-27 22:20:25 -05:00
H. Joe Lee
ce3784de25
Replace user-define with user-defined (#4261) 2024-03-27 13:55:44 -07:00
Scot Breitenfeld
6837fe5bc8
Addressed Fortran issues with promoted integers and reals via compilation flags, part 2 (#4221)
* addressed issue wit promoted integers and reals

* fixed h5fcreate_f

* added option to use mpi_f08

* change the kind of logical in the parallel tests

* addressed missing return value from callback
2024-03-25 07:42:03 -05:00
Scot Breitenfeld
c1a56f432e
Revert "Addressed Fortran issues with promoted integers and reals via compil…" (#4220)
This reverts commit 06c42ff038.
2024-03-23 07:16:43 -07:00
Scot Breitenfeld
06c42ff038
Addressed Fortran issues with promoted integers and reals via compilation flags (#4209)
* addressed issue wit promoted integers and reals

* added option to use mpi_f08
2024-03-22 11:52:58 -05:00
Scot Breitenfeld
8621663b99
Reworked H5Epush_f (#4153) 2024-03-19 04:59:32 -07:00
Scot Breitenfeld
ece121b415
Fixed misc. H5E fortran failures due to previous PR (#4138)
* fixed promotion of integers and reals tests and check-passthrough-vol failure

* fixed cygwin issue
2024-03-15 07:37:22 -05:00
Scot Breitenfeld
f22f538ab7
fixes compilation failures due to H5E additions (#4090) 2024-03-08 10:57:05 -08:00
Scot Breitenfeld
9d8e882496
Added new H5E with tests. (#4049)
Added Fortran H5E APIs:
h5eregister_class_f, h5eunregister_class_f, h5ecreate_msg_f, h5eclose_msg_f
h5eget_msg_f, h5epush_f, h5eget_num_f, h5ewalk_f, h5eget_class_name_f,
h5eappend_stack_f, h5eget_current_stack_f, h5eset_current_stack_f, h5ecreate_stack_f,
h5eclose_stack_f, h5epop_f, h5eprint_f (C h5eprint v2 signature)

Addresses Issue #3987
2024-03-07 03:34:55 -08:00
Allen Byrne
0be892585a
Rename incorrectly named option (#4067)
* Rename incorrectly named option

* Restore the correct uses of USING_MEMCHECKER

* Update release note
2024-03-05 09:07:16 -08:00
Scot Breitenfeld
e7f41a2fbf
Fix the datatype passed to H5*exists_async APIs in tests. (#4033)
Add a new testing function to verify C_BOOL values.
2024-02-23 07:57:30 -06:00
Scot Breitenfeld
791915e92a
Fixed XL and gfortran errors (#3968)
* fixed XL and Gfortran errors

* fixed data type len array
2024-01-30 09:05:20 -08:00
Scot Breitenfeld
424f3803ea
fixed BIND name (#3957)
* update H5Ssel_iter_reset_f test
2024-01-24 10:19:47 -06:00
Scot Breitenfeld
54fb809382
Fortran API work. (#3941)
* - Added Fortran APIs:
      H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
      H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F

    - Added Fortran Parameters:
      H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F

    - Added tests for new APIs
    - Removed H5F C wrapper stubs
    - Documentation misc. cleanup.
2024-01-23 07:59:10 -08:00
Scot Breitenfeld
2fc140079b
Added H5Fdelete_f with test (#3912) 2023-12-30 17:33:31 -06:00
Allen Byrne
3ea21ccb3e
Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859) 2023-11-22 07:51:30 -06:00
Allen Byrne
66786fa036
Add intel oneapi windows build to CI CMake (#3836) 2023-11-10 07:36:46 -06:00
Scot Breitenfeld
6a3c859e58
Fortran Wrappers H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f (#3801)
* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f

* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests

* Added H5VLnative_addr_to_token_f and H5VLnative_token_to_address_f tests
2023-11-03 09:22:00 -07:00
Scot Breitenfeld
da3b7ff945
Add h5pget_actual_selection_io_mode fortran wrapper (#3746)
* added h5pget_actual_selection_io_mode_f test

* added tests for h5pget_actual_selection_io_mode_f

* fixed int_f type conversion
2023-10-23 14:55:47 -05:00
Scot Breitenfeld
5672fd8177
Attempt to quiet some warnings with cray compilers. (#3724) 2023-10-19 14:40:08 -07:00
Allen Byrne
405b0c62f8
Correct fortran CMake generator expressions (#3670) 2023-10-13 23:41:17 -05:00
Scot Breitenfeld
6aaa960d90
Fixes test failure for gfortran -O2 and -O3, -fdefault-real-16 (#3662)
* added cmake ieee flag for nagfor

* fixes gfortran -O2 and -O3, -fdefault-real-16

* fixed sync

* updated release notes
2023-10-13 09:39:06 -07:00
Scot Breitenfeld
85c176247d
Address nagfor exceptions stoppage. (#3658)
* added cmake ieee flag for nagfor

* generalized determining the nag compiler

* fixing some misc. NAG warnings
2023-10-11 15:16:01 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Scot Breitenfeld
75ba9ec7a6
removed C_INT32_T from Fortran APIs (#3537) 2023-09-14 07:51:39 -07:00
Scot Breitenfeld
a0edeee49f
fixed nvidia compiler issue (#3527) 2023-09-11 11:57:30 -05:00
Scot Breitenfeld
2345f901b2
misc. fortran fixes for failing CI dailty tests (#3523)
* fixed H5Lvisit* interface

* changed integer type for direct write
2023-09-08 17:15:52 -05:00
Scot Breitenfeld
08e115b7d8
Added new Fortran API wrappers (#3511)
* Added new wrappers for
h5get_free_list_sizes_f
H5Sselect_intersect_block_f
H5Sselect_shape_same_f
h5pget_no_selection_io_cause_f
h5pget_mpio_no_collective_cause_f
H5Lvisit_by_name_f
H5Lvisit_f
H5Fget_info_f
h5dwrite_chunk_f
h5dread_chunk_f

* added h5pget_file_space_page_size_f, h5pset_file_space_page_size_f, h5pget_file_space_strategy_f, h5pset_file_space_strategy_f, h5info tests

* added fortran tests

* Update tH5F.F90
2023-09-07 17:25:07 -05:00
Scot Breitenfeld
1706355ee1
removed the use of encoded single apostrophe (#3261)
* removed the use of encoded single apostrophe, and fix H5Dread_chunk from write to read

* updated sanitizer paragraph
* fixed brief description for H5Fget_info
2023-07-20 09:01:58 -05:00
Sean McBride
1903c4b1b0
Fixed more warnings about extra semicolons (#3249)
* Require semi-colon after H5_CHECK_OVERFLOW calls



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2023-07-18 10:35:05 -05:00
Dana Robinson
fd933f30b1
Remove programmer/date from comments (#3210)
* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work
2023-06-29 12:13:29 -07:00
Dana Robinson
942739e6fb
Remove HD/hbool_t from fortran (#3182) 2023-06-27 17:42:29 -07:00
Scot Breitenfeld
66cee72768
Print out the VOL connector being used in the ASYNC test (#3016)
* Print out the VOL connector being used in the ASYNC test
* Add h5pget_vol_cap_flags_f with test
2023-06-05 09:59:51 -07:00
Dana Robinson
7ecf1d09af
Convert H5F haddr_t macros to H5 (#3039)
Several macros for handling haddr_t values exist in H5Fprivate.h
and have H5F prefixes, even though they have nothing to do with
a particular file (e.g., H5F_addr_lt()).

These macros have been moved to H5private.h and renamed to have
an H5 prefix.

Affected macros:
    H5F_addr_overflow
    H5F_addr_defined
    H5F_addr_eq
    H5F_addr_ne
    H5F_addr_lt
    H5F_addr_le
    H5F_addr_gt
    H5F_addr_ge
    H5F_addr_cmp
    H5F_addr_overlap

H5F_addr_pow2 was unused and removed instead of converted.
2023-06-05 08:04:56 -07:00
Scot Breitenfeld
a888742959
Updated H5Ovisit_f and H5Ovisit_by_name_f wrappers internals. (#2987)
* * Removed C wrappers for H5Ovisit_f and H5Ovist_by_name_f, modifying the Fortran source accordingly.

* The intent for op_data was declared INOUT, even though the pointer address INTENT is, in actuality, IN. gfortran was optimizing out op_data in tests where the values were repeatedly reset to the same value. The values were reset in the test because the data the pointer targeted was updated in the callback.

* Made use of the 'verify' function to check value correctness.

* changed to useing INTEGER(C_INT) instead of C_BOOL, updated the documentation
2023-05-22 16:17:14 -07:00
Dana Robinson
5c2e434dc6
Fix 'datatype' misspellings ('dataype') (#2984) 2023-05-19 09:05:23 -07:00
Scot Breitenfeld
482920808f
Fixes failures with gfortran 4.8 (#2979) 2023-05-18 16:07:24 -05:00
Allen Byrne
4b228ec6af
Fix CMake generator expression syntax (#2909) 2023-05-05 15:57:40 -05:00
Scot Breitenfeld
41fd8e66a9
Fixed test failure for when REAL is promoted via a compiler flag (#2873) 2023-05-02 09:56:52 -07:00
Scot Breitenfeld
a0340338e5
Add Fortran Selection IO APIs (#2864)
new selection IO fortran APIs with tests
2023-05-01 15:21:47 -07:00
Dana Robinson
265494b5b9
Remove "the the" from comments and docs (#2865) 2023-05-01 09:06:39 -07:00