Commit Graph

13756 Commits

Author SHA1 Message Date
Allen Byrne
c6fe8c70b2 [svn-r24932] HDFFV-8290: Remove unnecessary $(srcdir) and use AM_CPPFLAGS instead of INCLUDES. Update automake to 1.14.1
h5committest
2014-03-31 12:07:05 -05:00
Allen Byrne
cf482acf55 [svn-r24931] Add interface property to target 2014-03-31 10:45:07 -05:00
Binh-Minh Ribler
5f17eea9cd [svn-r24929] Description:
Added proper deallocation/allocation to test.
    Revised incorrect comments.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-03-31 00:27:17 -05:00
Binh-Minh Ribler
82df757e96 [svn-r24926] Description:
Added c++/test/tdspl.cpp
2014-03-30 11:16:04 -05:00
Binh-Minh Ribler
be38074a2f [svn-r24925] Purpose: Fix HDFFV-7907
Description:
    Added transform property list functions
        // Constructor creates a dataset transform property list.
        DSetMemXferPropList(const char* expression);

        // Sets data transform expression.
        void setDataTransform(const char* expression) const;
        void setDataTransform(const H5std_string& expression) const;

        // Gets data transform expression.
        ssize_t getDataTransform(char* exp, size_t buf_size=0) const;
        H5std_string getDataTransform() const;

    Added test file tdspl.cpp.

Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-03-30 11:15:11 -05:00
HDF Tester
d6cd6cabc2 [svn-r24924] Snapshot version 1.9 release 175 2014-03-30 04:18:22 -05:00
Allen Byrne
5ccbc671e4 [svn-r24919] Add MINGW check
Tested: MinGW on Windows 7
2014-03-27 15:34:35 -05:00
Allen Byrne
65ebbe2753 [svn-r24918] Fix command case 2014-03-27 15:32:47 -05:00
Binh-Minh Ribler
e79b0dece5 [svn-r24912] Purpose: Fix HDFFV-8642
Description:
    Added CompType::setSize(size_t size) to set size for compound data type
    as H5Tset_size had been changed.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-03-26 23:36:53 -05:00
Allen Byrne
448e1e05f1 [svn-r24904] Revert includes move 2014-03-26 09:38:18 -05:00
Allen Byrne
1e1f754fb0 [svn-r24903] Correct mod install lists
Tested: local linux
2014-03-26 09:36:08 -05:00
Binh-Minh Ribler
7ed2b997ba [svn-r24901] Description:
Fixed mismatched function prototype/definition that caused daily
    test failure on emu/production/HDF5TestExpress=1.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    SunOS 5.11 (emu)
2014-03-25 19:47:07 -05:00
Allen Byrne
9db0c02b96 [svn-r24899] Add msmpi fortran libs to FindMPI 2014-03-25 16:57:30 -05:00
Allen Byrne
425408b5a1 [svn-r24895] Add INTERFACE properties to libs 2014-03-25 13:25:53 -05:00
Dana Robinson
84e27c4af1 [svn-r24893] CMake now prohibits configuring thread-safety w/ Fortran and C++.
These changes only apply to non-Cygwin Windows since CMake does not allow configuring thread-safety on any other platform.

Tested on 64-bit Windows 7.
2014-03-25 10:44:51 -05:00
Allen Byrne
403506efd4 [svn-r24889] Fix fortran mod file handling and packing 2014-03-24 16:58:59 -05:00
Scot Breitenfeld
8b27024edd [svn-r24888] Cleaned-up warning errors using --enable-fortran only and gcc 4.8.2
tested: gcc (4.8.2, jam)
2014-03-24 16:20:14 -05:00
Allen Byrne
075a5a9a3a [svn-r24887] Fix fortran mod file handling and packing 2014-03-24 16:03:32 -05:00
Allen Byrne
63e1b32068 [svn-r24886] Fix fortran mod file handling and packing 2014-03-24 16:00:34 -05:00
Allen Byrne
810285be8e [svn-r24876] Move includes command up before all programs 2014-03-24 11:29:13 -05:00
Quincey Koziol
f251a0219c [svn-r24875] Description:
Update with corresponding information that was changed in
hl/src/H5Tanalyze.l in r24869.

Tested on:
    Linux 2.6.32-431.5.1.el6.ppc64/64 (ostrich)
2014-03-24 10:48:36 -05:00
Quincey Koziol
f97d63cb95 [svn-r24869] Description:
Clean up more compiler warnings, plus merge a few Coverity bug fixes from
the hdf5_1_8_coverity branch back to the trunk:

r20877:
Purpose: Fix coverity issue 1723

Description:
Modified test_generate in hl/test_image to close file "f" before exit, even if
an error occurs.

r20879:
Issue 63: change check of return of H5Tget_nmembers to <=0. No need to go
futher if call fails as well as empty.

r20881:
Coverity #659 in Run 46: I changed the Line 442 where it tries to check whether
FLAG_PRINTED is TRUE.  But it had just been set to FALSE.  I took out the
condition check in the print statement.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & Parallel
    (too minor to require h5committest)
2014-03-23 01:27:57 -05:00
Binh-Minh Ribler
67be45610f [svn-r24867] Description:
- Added a null terminator to the comment returned from the C call, in
        getComment methods
    - Some minor cleanup
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    Linux/64 2.6 (platypus)/PGI compilers
2014-03-22 15:39:44 -05:00
Scot Breitenfeld
958a762dd1 [svn-r24866] Fixed compiler warnings using gnu 4.8.1
Tested: jam( intel, gnu, pgi)
2014-03-22 15:01:58 -05:00
Binh-Minh Ribler
60df159d33 [svn-r24865] Description:
- Added another overload for char* argument:
        ssize_t getComment(const char* name, const size_t buf_size, char* comment)
    - Changed default value to 0 for the other two getComment methods
    - Added HDmemset to after every char string allocation to clear the buffer
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    Linux/64 2.6 (platypus)/PGI compilers
2014-03-21 18:23:05 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Allen Byrne
c4f982abf1 [svn-r24859] Remove unnecessary use of $(srcdir).
Tested: local linux, h5committest
2014-03-21 13:50:30 -05:00
Dana Robinson
7a4727d80c [svn-r24857] --enable-threadsafe no longer requires --with-pthreads if Pthreads can
be found in the standard include and library paths.

Tested on:
    32-bit LE linux (jam)
    SunOS 5.11 (emu)
    64-bit Darwin 12.5 (kite)
    64-bit FreeBSD 8.2 (freedom)

Testing focused on making sure that Pthreads could be found on different
platforms and investigating the interaction of Fortran/C++/thread-safe
options.
2014-03-21 10:19:07 -05:00
Scot Breitenfeld
6515a1f8ac [svn-r24856] added missing common statement 2014-03-21 09:34:05 -05:00
Scot Breitenfeld
6c13c99ce9 [svn-r24855] added missing dllexport 2014-03-21 09:28:03 -05:00
Allen Byrne
da23edd24e [svn-r24851] example causes modal permission dialog to popup on windows. build but do not execute. 2014-03-20 16:18:30 -05:00
Allen Byrne
ba2c98d42a [svn-r24850] example causes modal permission dialog to popup on windows. Do not build. 2014-03-20 16:17:24 -05:00
Allen Byrne
0be0491ee4 [svn-r24849] Update to synch with latest cmake 2014-03-20 14:05:30 -05:00
Scot Breitenfeld
34bfba14d5 [svn-r24846] Bug fix for HDFFV-8689 : Mix-match of type in H5D_CHUNK_CACHE_NBYTES_DEFAULT, Review HDF5-184
Tested with -i8 flag with intel compilers and --enable-production
2014-03-20 09:06:42 -05:00
Binh-Minh Ribler
ff565cd175 [svn-r24830] Purpose: HDFFV-8623
Description:
    Applied patch from user Jason Newton.  JIRA issue HDFFV-8623, patch
    9, improve c++ compatibility with exceptions.  All additions of "throw()"
    are included.  Exception::what() is not added because it is not necessary.
    It was suggested for the name, which follows stdlib.
Platforms tested:
    Linux/ppc64 (ostrich)
    Linux/32 2.6 (jam)
    Linux/64 2.6 (koala)/PGI compilers
2014-03-18 14:31:18 -05:00
Allen Byrne
44fe3cc19b [svn-r24826] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:55:05 -05:00
Allen Byrne
03d10edd23 [svn-r24824] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Bump up CMake minimum versions.
Split test file into separate file for h5repack test.

Tested: local linux
2014-03-18 11:21:46 -05:00
Allen Byrne
73a72c59b8 [svn-r24822] Update GYGWIN version 2014-03-18 10:03:21 -05:00
Allen Byrne
185b3c5dee [svn-r24816] HDFFV-8695:
Add notes about defining  
-DCMAKE_BUILD_TYPE:STRING=Release
2014-03-17 17:12:46 -05:00
Quincey Koziol
164b4c7534 [svn-r24804] Description:
Brought changes from Coverity branch back to trunk, and cleaned up misc.
other warnings & formatting issues:

r20833:
Fixed Coverity 667 and 668 with real integer overflow tests this time.

r20834:
Use HDstrncpy and HDstrncat. --gh 

r20835:
Change to use strncpy - use base_len + 1 for line 156, use HDstrlen(path) + 1 for line 159

r20836:
Fixed coverity 585 by casting output of fgetc() to a char.

r20837:
Changed sprintf calls to snprintf with size 1 less than the allocated buffer to address coverity issue #967.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-03-15 23:44:13 -05:00
Quincey Koziol
288c7760a4 [svn-r24803] Description:
Rename GCC_DIAG_OFF/ON macros to H5_GCC_DIAG_OFF/ON and move from
src/H5private.h to src/H5public.h.  Wrap typedef of hsize_t and hssize_t
in DIAG_OFF(long-long) macros.

    Clean up a bunch of "macro '-' is unused" warnings.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/gcc 4.8.2, C++, FORTRAN, parallel
    (too minor to require h5committest)
2014-03-15 22:13:52 -05:00
Allen Byrne
f5689224b5 [svn-r24789] Bump up the minimum cmake version 2014-03-13 10:05:09 -05:00
Scot Breitenfeld
b17f3e4183 [svn-r24783] fixed typo 2014-03-12 09:20:47 -05:00
Allen Byrne
6c5e74942d [svn-r24782] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
2014-03-11 17:07:13 -05:00
Allen Byrne
a3292a77ce [svn-r24781] HDFFV-8700 -
KitWare recommendations: Change CMake commands to lower case.
Remove INCLUDE_DIRECTORIES in src for target level includes.
Change ADD_DEFINITIONS package debug defines into CMake option.
Remove -DNDEBUG
2014-03-11 16:14:57 -05:00
Quincey Koziol
5b7c8c7a7d [svn-r24772] Description:
Correct some dynamically sized arrays that fail on Windows.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel
2014-03-10 13:03:35 -05:00
HDF Tester
4a9ea60adc [svn-r24770] Snapshot version 1.9 release 174 2014-03-09 05:17:47 -05:00
Quincey Koziol
ac0ef34a41 [svn-r24769] Description:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (h5committest forthcoming)
2014-03-07 14:12:20 -05:00
Neil Fortner
e367f64e24 [svn-r24757] Change assertion to condition check/error return. Should fix periodic
assertion failure in fheap test (in test that is expected to fail cleanly).

Fix type in H5detect.c

Tested: ostrich, platypus (h5committest - jam and koala having issues)
2014-03-03 17:54:14 -05:00
HDF Tester
f683d9a035 [svn-r24753] Snapshot version 1.9 release 173 2014-03-02 04:16:37 -05:00