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779 Commits

Author SHA1 Message Date
Dana Robinson
5aa8bc154d Fixed the heap overflow in t_filters_parallel 2019-06-21 14:13:16 -07:00
Dana Robinson
b4bd49ffdd Fixed some low-hanging fruit from -fsanitize in t_filters_parallel. 2019-06-21 13:18:09 -07:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets 
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
 2019-06-18 07:46:25 -05:00
Larry Knox
8a4f679fda Combine "collective group and dataset write" and "independent group and 
dataset read" tests into one test.  The second test is dependent on the
file created by the first test, and will not pass when run by itself.
 2019-05-03 16:08:22 -05:00
Allen Byrne
813d8fd597 Add final list of single testphdf5 tests 2019-05-02 16:20:15 -05:00
Allen Byrne
b6bebb245b Pull a test from default testphdf5 2019-05-02 12:07:37 -05:00
Allen Byrne
c643cc0531 Pull out another failing test 2019-05-02 10:27:49 -05:00
Allen Byrne
c030a7123d Correct var usage syntax 2019-05-01 14:46:27 -05:00
Allen Byrne
725f75baa7 Correct varname 2019-05-01 13:24:02 -05:00
Allen Byrne
e0de04d355 Separate out MPI tests that fail on MPI version 2019-05-01 12:31:55 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change. 
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
 2019-04-06 16:55:14 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable. 
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
 2019-03-09 21:41:38 -06:00
Allen Byrne
122b63a5a2 HDFFV-10703 Update CMake commands to latest standard 2019-02-15 15:48:24 -06:00
Quincey Koziol
10cdff5ca4 Merge pull request #1540 in HDFFV/hdf5 from merge_hyperslab_changes_01 to develop 
* commit 'fb5d1a37c11bca613175a48262a2147e99c9dede':
  Align develop with incoming hyperslab_updates branch changes.
 2019-02-13 18:13:18 -06:00
Allen Byrne
b95f05638c TRILAB-111 fixes for parallel testing 2019-02-13 15:53:59 -06:00
Quincey Koziol
b5305b25a6 Align develop with incoming hyperslab_updates branch changes. 2019-02-12 21:51:15 -06:00
Jordan Henderson
34508f0620 Merge in latest from develop 2019-02-11 19:13:39 -06:00
Jordan Henderson
65a820ae89 Fix some collective metadata read issues 2019-02-11 18:31:23 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
d98faf5703 Rename parallel tests to start with PAR_ 2019-02-11 11:09:43 -06:00
Jordan Henderson
28b9af4f28 Fix test issue in testpar/t_dset.c with MPI-2 implementations 2019-02-07 14:31:32 -06:00
Quincey Koziol
fed17ed383 HDFFV-10625 -- Implemented a process-0 read and then broadcast for collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator. 2019-01-07 16:55:59 -06:00
Dana Robinson
d59aa1d75c Cleaned up the parallel flush test and set t_pflush1 to always fail. 
Also set CMake to handle this.
 2019-01-03 20:45:58 -08:00
Dana Robinson
4faca62679 Eliminated the need for a separate script variable. 2018-12-31 05:04:30 -08:00
Dana Robinson
a3faa92653 Merge branch 'develop' into openmpi_tweaks 2018-12-30 22:24:42 -08:00
Dana Robinson
552fec96e9 Merge branch 'develop' into md_cache_logging_squash 2018-12-27 22:22:24 -08:00
Allen Byrne
991996b251 Remove unused CMake files 2018-12-21 12:22:32 -06:00
Dana Robinson
18e6ec82d0 Squash merge of MDC logging changes. 2018-12-20 20:41:42 -08:00
Allen Byrne
3c8b00dbd8 HDFFV-10656 remove moved source 2018-12-20 15:35:37 -06:00
Allen Byrne
7e8923957f HDFFV-10656 Add CHECK_VOL support to CMake 2018-12-20 15:11:27 -06:00
Dana Robinson
64eb1489de Added a helpful message to the flush script. 2018-12-20 03:43:53 -08:00
Dana Robinson
fe1a5b4279 Added a shell script so we can run the parallel flush test 
on OpenMPI.
 2018-12-20 03:03:16 -08:00
Jordan Henderson
406f7916ce Updates to t_filters_parallel for missing filters 2018-12-05 15:23:44 -06:00
Dana Robinson
6fccabed2e Missed some function renames in error text. 2018-11-27 11:50:35 -08:00
Dana Robinson
8cf3bfb14b Yanked all MPI-1 calls 2018-11-27 10:31:54 -08:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
a2da9930af replace page chars 2018-09-27 11:50:22 -05:00
Allen Byrne
8e48f6ec3a Remove obsolete comment 2018-09-27 09:58:27 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Jordan Henderson
556bfd498c Update MANIFEST file for new t_coll_md_read.c file 
Remove old line from copyright notice
 2018-08-27 08:56:17 -05:00
Jordan Henderson
4cd10fa88e Add fix for HDFFV-10501 
Add test for HDFFV-10501 fix

Add release note for HDFFV-10501 fix
 2018-08-25 22:54:30 -05:00
Jordan Henderson
70de0b18e3 Merge pull request #1167 in HDFFV/hdf5 from ~JHENDERSON/hdf5:bugfix/MPI2_only_fixes to develop 
* commit '9aa2eaeb9ed9c94f63973cb55f13de256558497c':
  Add Autotools and CMake checks for big I/O MPI-3 functions
  Add hdf5settings section for parallel compression status in CMake builds
  Switch to CheckSymbolExists in CMake
  Add configure check for MPI_Mprobe and MPI_Imrecv functions
 2018-08-02 09:25:00 -05:00
Jordan Henderson
d075c0854d Add quotes to places where MPI_C_LIBRARIES are linked against 2018-07-27 14:58:01 -05:00
Jordan Henderson
e1e10743cf Add configure check for MPI_Mprobe and MPI_Imrecv functions 
Add line to libhdf5settings file for status of Parallel writes to
filtered datasets status

Surround Parallel Compression code in MPI_VERSION >= 3 checks

Add disabled message for Parallel Compression built w/ MPI-2

Modify Parallel Compression tests to only run the parallel filtered read
tests when parallel filtered writes are disabled

Update big I/O code to handle being built with MPI-2

Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
 2018-07-26 12:50:26 -05:00
Jordan Henderson
9fe86bc51c Add test to continually grow and shrink chunks 2018-06-04 13:49:42 -05:00
Jordan Henderson
e2c9f5a27a Changes to test with checksum filter as well as deflate filter 2018-06-04 10:53:08 -05:00
Jordan Henderson
6e37dff71f Fix bug in parallel reads of compressed data 
Add remaining parallel compound dataset partial read tests
 2018-05-17 11:07:23 -05:00
Jordan Henderson
2c8e6e6304 Add data verification to parallel filtered compound write tests 
Add 3D parallel filtered partial read tests
 2018-05-16 20:29:35 -05:00
Jordan Henderson
13f1790851 Add seven of fourteen parallel filtered data partial read tests 2018-05-15 14:12:32 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00