3421 Commits

Author SHA1 Message Date
Dana Robinson
c6097935d5 Separated VFD and VOL parameters in tools. 2020-04-20 17:38:45 -07:00
Dana Robinson
9ecca22dd1 Fixed problems with S3 and HDFS VFDs.
* Updated info struct parameter to correct info_string
* Fixed Makefile.am where the S3 VFD was listed twice, causing
  duplicated symbols errors.
2020-04-16 17:07:21 -07:00
Dana Robinson
2188e7d731 Update h5repack long arguments for id-->value changes. 2020-04-14 05:16:01 -07:00
Dana Robinson
28d2596f65 Changed identifiers and command-line options from "id" to "value" in tools
code to be in agreement with H5VL API terminology.
2020-04-14 04:31:01 -07:00
Dana Robinson
d86089f583 Added support for passing connector info strings via the command
line to the tools internals.
2020-04-09 08:40:41 -07:00
Dana Robinson
35c0d5cdfc Fix for passthrough VOL not passing tools tests due to incorrect
optional callback queries.
2020-04-08 16:44:19 -07:00
Allen Byrne
61b8018004 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'f6514c35ea3786206a8db73e1cad8fce8fe6a715':
  Updated test ddl files so CMake passes after h5dump failures.
  Modifications based on PR review feedback.
  Add two routines gen_ref_files() and gen_sel_files() to generate test files related to references and selections. These test files will be copied to 1.12, 1.10 and 1.8 for compatibility testing.
2020-04-07 07:08:16 -05:00
Dana Robinson
8e948aa7b7 Updated test ddl files so CMake passes after h5dump failures. 2020-04-06 15:19:55 -07:00
Allen Byrne
fd18d013f1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '4830a1796441abbb5a4fbd2cff9a651f2a0d066e':
  Updated tools dump output when dataset offset is undefined.
  Added checks for native optional call support in some of the tools.
  Misc changes for h5dump VOL changes.
2020-04-06 14:13:27 -05:00
Dana Robinson
110cafb9c7 Merge branch 'develop' into tools_vol_update 2020-04-06 09:38:00 -07:00
Allen Byrne
70495751c0 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '5d1590079ea0061a7b86d7210cb796b6d58a17c7':
  Skip testing of passthrough VOL connector in a Family File tools test
  Restore previous tools library driver name behavior with passthrough VOL connector
2020-04-05 11:06:35 -05:00
Allen Byrne
57f5d00a43 TRILAB-192 add c++ and fortran warnings build systems one file 2020-04-05 10:50:08 -05:00
Jordan Henderson
5d1590079e Merge pull request #2490 in HDFFV/hdf5 from tools_vol_update to develop
* commit 'a5a2fb44296327787476407a249d9470b3c80427':
  Skip testing of passthrough VOL connector in a Family File tools test
  Restore previous tools library driver name behavior with passthrough VOL connector
2020-04-03 15:06:08 -05:00
Jordan Henderson
a5a2fb4429 Skip testing of passthrough VOL connector in a Family File tools test 2020-04-03 14:29:10 -05:00
Jordan Henderson
08e77ac6fa Restore previous tools library driver name behavior with passthrough VOL connector 2020-04-03 12:45:22 -05:00
Allen Byrne
b7227657f2 Add missing header include 2020-04-03 08:50:51 -05:00
Dana Robinson
85b3b9e670 Updated tools dump output when dataset offset is undefined. 2020-04-02 10:25:46 -07:00
Dana Robinson
1c85473766 Fixed unnecessary H5R casts in the tools that were raising warnings. 2020-04-02 03:57:05 -07:00
Dana Robinson
456308ff17 Added checks for native optional call support in some of the tools. 2020-04-02 02:12:19 -07:00
Dana Robinson
3cd1b46b9c Merge branch 'develop' into tools_vol_update 2020-04-01 23:27:08 -07:00
Dana Robinson
b1533616f2 Minor renaming in the tools code. 2020-03-31 16:58:24 -07:00
Dana Robinson
816a12f04f Merge branch 'develop' into tools_vol_update 2020-03-31 03:43:03 -07:00
Gerd Heber
a46f31c2eb Merge pull request #2479 in HDFFV/hdf5 from ~GHEBER/hdf5:bugfix/HDFFV-11065 to develop
* commit '2dfc047bc4aca7c13bccf44da97bff026cbbf5a6':
  Fix for HDFFV-11065.
2020-03-30 11:26:14 -05:00
Dana Robinson
c36b707578 Merge branch 'tools_vol_update' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into tools_vol_update 2020-03-30 01:52:21 -07:00
Dana Robinson
36e8e2be4b Misc changes for h5dump VOL changes. 2020-03-30 01:51:36 -07:00
Gerd Heber
2dfc047bc4 Fix for HDFFV-11065. 2020-03-29 16:04:58 -05:00
Jordan Henderson
9676029742 Fix latent bug in h5repack options file reading
Add 'enable-error-stack' option to h5format_convert
2020-03-29 12:37:14 -05:00
Dana Robinson
2dd6075c7a Minor renaming in h5dump (addr --> token) 2020-03-27 17:17:00 -07:00
Allen Byrne
c66ce89383 Merge pull request #2473 in HDFFV/hdf5 from tools_vol_update to develop
* commit 'feb0f521b16b79485c22c86a630a1d91cb680a61':
  Fix some missing symbols issues in tools library
2020-03-27 17:06:23 -05:00
Jordan Henderson
feb0f521b1 Fix some missing symbols issues in tools library 2020-03-27 16:54:05 -05:00
Jordan Henderson
d5bbf3d408 Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to develop
* commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172':
  A few small tweaks to the tools from review
  Replace usage of some standard library functions with HD- versions
  Update Tools library to be better compatible with VOL connectors
2020-03-27 13:14:22 -05:00
Jordan Henderson
ea952b25ba A few small tweaks to the tools from review 2020-03-27 10:48:11 -05:00
Jordan Henderson
6d514db55a Replace usage of some standard library functions with HD- versions 2020-03-26 15:26:39 -05:00
Allen Byrne
27b23c8d52 Add extensive warnings to tools executables 2020-03-25 10:19:09 -05:00
Allen Byrne
0da6786185 unused set-variable in macro 2020-03-25 07:04:19 -05:00
Allen Byrne
2b8407a3ca Fix Werror issues in JNI and tools 2020-03-24 17:42:58 -05:00
Allen Byrne
1505fa1498 TRILAB-192 restrict extensive warnings to libraries 2020-03-24 16:45:12 -05:00
Jordan Henderson
fa087c3919 Update Tools library to be better compatible with VOL connectors
Modify h5repack to integrate with VOL connectors

Update tools library to accomodate VOL connectors

Update logic in h5tools_fopen for VOL connectors

Add command-line options to h5repack for specifying in/out VOL
connectors

Implement h5tools_set_vol_fapl

Fix library shutdown issue

Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme

Avoid H5Ocopy in h5repack when using different VOL connectors

Update h5tools_test_utils.c for ROS3 and HDFS integration
2020-03-17 14:25:36 -05:00
Allen Byrne
5abf6785cb Whitespace 2020-02-29 14:01:55 -06:00
Allen Byrne
4906d3d6a8 Fix standalone link 2020-02-25 14:57:14 -06:00
Allen Byrne
f7212df030 HDFFV-11036 add file compare test process 2020-02-24 12:45:22 -06:00
Allen Byrne
666205a55f TRILAB-142 Change minimum CMake version to 3.12 2020-02-21 16:16:06 -06:00
David Young
f9a8fd5a4c H5_HAVE_PARALLEL, _DEBUG_API, etc. Add attributes to some variables and
parameters that are unused under some configurations.
2020-02-10 14:41:20 -06:00
Muqun Yang
1b937c69f4 HDFFV-11014, fix the h5repack issue that misses a few attributes during the repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt. 2020-02-07 14:43:02 -06:00
Allen Byrne
c5e2d97573 Small fixes for tools and skip autotools tests for no filter 2020-01-29 15:39:25 -06:00
David Young
43d41633a1 Merge pull request #2318 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-1 to develop
* commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056':
  Reduce differences between my -Werror branch and `develop`:
2020-01-29 13:51:52 -06:00
David Young
0d6e025888 Merge pull request #2320 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-2 to develop
* commit 'a5f236e83bdd29e660a55c5577a69a3809605cda':
  Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
2020-01-29 13:51:27 -06:00
David Young
1b49ccd7fa Merge pull request #2321 in HDFFV/hdf5 from ~DYOUNG/werror:reduce-werror-diffs-3 to develop
* commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a':
  testpar/t_2Gio.c: Fix a typo that I think was introduced by a         previous warnings PR.  An array element was assigned to         itself---shape[2]Â =Â shape[2];---instead of being assigned to         chunk[2].
2020-01-29 13:51:10 -06:00
Allen Byrne
20c09524ea Merge pull request #2319 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-11011 to develop
* commit 'c8096118d5edd9f27ff0f6180a4dde4c10aafda7':
  HDFFV-11011 - merge include list
  HDFFV-11011 correct issues with target file extension
2020-01-29 13:12:14 -06:00
David Young
f19e06b59e testpar/t_2Gio.c: Fix a typo that I think was introduced by a
previous warnings PR.  An array element was assigned to
        itself---shape[2]Â =Â shape[2];---instead of being assigned to
        chunk[2].

fortran/src/H5Pf.c: move conditional compilation controlled by
        H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

fortran/src/H5match_types.c: put a variable's declaration under the same
        conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
        use.

For now, skip compilation of some unused debug dump routines in the JNI.
While I'm in the JNI, delete a set-but-unused variable.

src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
        so that it's not declared but unused or vice versa.

test/cache_common.h: add an #include in to get some symbols we need to
        avoid implicit declaration warnings.

test/dsets.c: use a more conventional conditional-compilation syntax.

test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
        variables before use.

test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
        instead of `int **`.

testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
        "equal to 0?" is the question not "is false?"  Repair some
        indentation while I'm here.

testpar/testpar.h: repair misaligned line-continuation backslashes in a
        macro that probably should be a function so that we don't have
        to fiddle with the line continuation to begin with.

tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
        enums.

tools/test/perform/pio_engine.c: the compiler fusses if you cast a
        function call returning double directly to off_t.  It's ok if
        you cast a variable that's a double to off_t, however.  Write
        and use a new function, sqrto(), to avoid the cast warnings.
2020-01-29 11:44:39 -06:00