This also affected the use of the #include <winsock.h> needed by gethostname. The new include: winsock2.h has been added to h5private.h and either removed or updated in the other files.
Tested: Windows
Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'.
Description:
There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
Support follow symbolic links.
Description:
Add '--follow-symlinks' option to follow symbolic links (soft and external).
Update help page according to RM.
Remove some warning messages from compiler.
Tested:
jam, amani and linew
Added ibm-flags to display the IBM XL compilers version information so that configure
can report them in the configure summary and the libhdf5.settings file.
For now, only the C compiler (xlc) versions are displayed.
Also moved the C compiler options setting from ibm-aix to ibm-flags.
Tested: NCSA Blue-print, both 32 and 64 bit modes.
Bring r18911 (plus some adaptions to match the code on the trunk)
from the metadata journaling "merging" branch to the trunk:
More general changes to align trunk with eventual changes from
metadata journaling branch.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
fill values.
Description:
Previously, H5D_chunk_allocate would, if a dataset were filtered and had a non-default VL fill value, allocate a new buffer for every chunk. Changed
H5D_chunk_allocate to reuse the existing buffer if possible. Also other
miscellaneous cleanup.
Tested: jam, linew, amani (h5committest)
- Add an install rule to copy compiled fortran module files
- Only build the xlatefile utility if testing and tools are enabled
- Don't do MPI HAVE_XXX checks until MPI_FOUND is true
- Install needs H5version.h & H5overflow.h to be copied
- Add debug information flags to debug compile and link lines for win32 Intel compiler
Fixed a bug (1855) in H5DSattach_scale, H5DSis_attached and H5DSdetach_scale
caused by using H5Tget_native_type function to determine the native
type for reading REFERENCE_LIST attribute. The bug was exposed on Mac PPC.
Platforms tested: juniper (Mac PPC), jam, amani, linew
Rename '--follow-links' to '--follow-symlinks'
Description:
The '--follow-links' option is to follow symbolic links (soft and external).
Make the name more intuitive and specific to the feature.
Tested:
jam, amani and linew
Clean up compiler warnings (on Windows, I hope) by marking some routines
as taking 'volatile' parameters.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor for h5committest)
Description:
Previously, it was possible for a chunk to be flushed due to chunk operations in
the callback from H5B_iterate in H5D_chunk_prune_by_extent. Because flushing
the chunk can force it to be reallocated if it is filtered, this can change the
contents of the chunk b-tree in the middle of H5B_iterate. Because H5B_iterate
uses a locally cached copy of the b-tree, this causes subsequent operations
to be passed incorrect data. Rewrote H5D_chunk_prune_by_extent to avoid
H5B_iterate entirely.
Also fixed a bug in the dataset expand algorithm that could cause extra chunks
to be created.
Tested: jam, linew, smirom (h5committest)
Remove the size parameter from H5[A]C_unprotect() and the
H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using
H5[A]C_resize_entry appropriately.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Correct function enter macro and add 'done' label, for routine that is
only invoked when configured with --enable-debug=all.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug & production
(too minor to require h5committest)
Fixed a bug in the H5DSdetach_scale function when 0 bytes
were allocated after the last reference to a dim. scale
was removed from the list of references in a VL element of the
DIMENSION_LIST attribute; modified the function to comply
with the Spec: DIMENSION_LIST attribute is deleted now when no
dimension scales left attached.
Platforms tested: jam with electric fence, amani amd linew
Add bug fixes for Tools.
Description:
Added list:
1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE
1814 - NPOESS: h5repack doesn't handle references to the groups as an
element of a dataset
1817 - h5copy fail to copy dangling link by specifying link path directly
1793 - h5ls on a non-existent file gives 0 return code
Tested:
no, just text update.
Fixed file cleanup during make distclean / make check.
Description:
The h5jam Makefile and the h5importtestutil.sh script both included cleanup
steps that removed "*.txt" from the directory. This resulted in the new
CMake specific configuration file, CMakeLists.txt, getting blown away by
make distclean (for h5jam) and make check (for h5import).
I've removed the *.txt from the h5jam Makefile as the directory looks to be
getting cleaned appropriately without it, and I've modified the h5import
script h5importtestutil.sh to point to the specific .txt files to clean.
Tested:
jam
Fix memory leaks
Description
Added a routine to free memory which addresses a memory leak
when variable length strings are used as fill values.
Tested:
h5committest and valgrind (on jam/amani) to confirm freed memory.
