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c37607eb58
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Author SHA1 Message Date
Binh-Minh Ribler
c37607eb58 [svn-r29759] Purpose: Code improvements 
Description:
    - Changed object in catch statements to reference
    - Replaced old-style casts or reinterpret_cast with static_cast
    - Removed unused name H5Library::need_cleanup
    - Removed Exception::printError from documentation
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2016-04-22 06:22:34 -05:00
Larry Knox
c63f96d6e7 [svn-r29755] test/ohdr.c apply fix for HDFFV-9713 to not open test file in source with write permission. 
config/linux-gnulibc1   reapply filx for HDFFV-9439 which was partially removed, probably by merge from revise_chunks branch.

Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
 2016-04-20 15:53:47 -05:00
Scot Breitenfeld
988c33527f [svn-r29745] HDFFV-9767 
h5perf output; should be MB not MBs

FIX: changed output text from MBs to MB and KBs to KB
 2016-04-19 10:00:53 -05:00
Quincey Koziol
5108468482 [svn-r29743] Description: 
Close another FAPL in the test_missing_chunk() routine.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
 2016-04-19 09:25:49 -05:00
Quincey Koziol
c02c88f874 [svn-r29742] Description: 
Add missing source file for single chunk index.

Tested on:
    Windows (via daily testing
 2016-04-19 09:18:30 -05:00
Quincey Koziol
f7aff7d5cf [svn-r29738] Description: 
Bring "single" chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
 2016-04-18 23:21:12 -05:00
Quincey Koziol
6ce67650fb [svn-r29736] Description: 
Close FAPL that was leaked in zero_dims test.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production, including check-vfd
    (h5committest forthcoming)
 2016-04-18 21:42:30 -05:00
Quincey Koziol
062055fe60 [svn-r29730] Description: 
Add missing pre-generated files to list of test files to copy.

Tested on:
    Windows (Reported by Allen)
 2016-04-18 09:56:48 -05:00
Quincey Koziol
36062736a5 [svn-r29722] Description: 
Bring over more dataset tests from the revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-17 02:26:51 -05:00
Quincey Koziol
ce8905cc90 [svn-r29718] Description: 
Bring changes from revise_chunks branch to trunk

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel, and production
    (h5committest forthcoming)
 2016-04-16 03:50:45 -05:00
Quincey Koziol
81ef260f6b [svn-r29717] Description: 
Correct chunk index computation for earrays and farrays, particularly when
copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size)
that require iterating over all chunks.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-04-16 03:42:48 -05:00
Quincey Koziol
a916ea97b8 [svn-r29716] Description: 
Add missing testfiles from dsets.c to the 'clean' target.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-04-16 03:40:06 -05:00
Quincey Koziol
d3574d0570 [svn-r29715] Description: 
Clean up coding to increment/decrement underlying FAPL for multi/split
VFDs, to avoid copying property lists as much.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-04-16 03:39:01 -05:00
Quincey Koziol
be24e91aec [svn-r29714] Description: 
Switch to use internal DXPL ID, to align with recent changes within the
library.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (Too minor to require h5committest)
 2016-04-16 03:36:47 -05:00
Quincey Koziol
ccdf15d88a [svn-r29712] Description: 
Minor code cleanups to address typos & warnings.

Tested on:
    MaOSX/64 10.11.4 (amazon) w/serial & parallel
    (Too minor to require h5committest)
 2016-04-16 03:34:27 -05:00
Binh-Minh Ribler
bd4d0d62bd [svn-r29710] Purpose: Code improvements 
Description:
    - Replaced "goto out" and "out:" with "goto error" and "error:" to indicate
      the failure situations.
    - Replaced old-style casts with static_cast to remove warnings.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
 2016-04-15 14:08:28 -05:00
Dana Robinson
57b7130acf [svn-r29698] Switched true and false to TRUE and FALSE in a function in 
test/external.c.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial (external test only)
 2016-04-14 16:26:41 -05:00
Larry Knox
e2c8d94ac1 [svn-r29696] Applied fix for HDFFV-9439 to mpicc config as well as mpif90 in config/linux-gnulibc1. 
Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
 2016-04-14 15:18:02 -05:00
Allen Byrne
18e360b9fa [svn-r29683] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
remove h5repack fix ddl files needed when h5repack VDS fix is implemented.
 2016-04-11 09:21:37 -05:00
Allen Byrne
0ff3a85a48 [svn-r29681] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
Additional tests to be skipped
 2016-04-11 08:53:55 -05:00
Allen Byrne
7fe0324fc4 [svn-r29680] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 
SKIP h5repack VDS tests until h5repack is fixed.
 2016-04-11 08:45:33 -05:00
Larry Knox
921b68afa7 [svn-r29678] Revert r29672 changes to h5diff. 
Tested h5committest.new
 2016-04-09 13:48:43 -05:00
Allen Byrne
1335631f3d [svn-r29673] Fix typo of var name 2016-04-08 12:44:36 -05:00
Allen Byrne
1a5ee65d50 [svn-r29672] HDFFV-1956: h5diff will warn if a dataset is virtual instead of failing. h5diff does not consider the layout type when comparing datasets. 2016-04-08 12:43:59 -05:00
Dana Robinson
c575abdeff [svn-r29668] Added H5Dfarray.c to CMake. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           CMake serial
 2016-04-07 20:06:17 -05:00
Dana Robinson
305d218725 [svn-r29665] Added new chunk index types to h5debug. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial
 2016-04-07 15:31:17 -05:00
Dana Robinson
e5c94192d7 [svn-r29659] Added fixed array chunk indexing from revise_chunks. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial w/ Java, Fortran, & C++
 2016-04-07 13:21:47 -05:00
Dana Robinson
f2c3407eb6 [svn-r29655] Added H5D_CHUNK_BTREE to the deprecated section of H5Dpublic.h. 
Tested on: 64-bit Ubuntu 15.10 (build only, not used in existing code)
 2016-04-07 09:50:44 -05:00
Scot Breitenfeld
77a806591d [svn-r29653] fixed A variable that is specified as an argument to the intrinsic procedure C_LOC must either have type and type parameters that are interoperable with a C type, or be a nonpolymorphic, scalar variable with no length type parameters. 2016-04-07 08:54:48 -05:00
Scot Breitenfeld
02a07cb0cf [svn-r29649] changed indentation format, updated comments 2016-04-06 13:30:16 -05:00
Scot Breitenfeld
01f479abb4 [svn-r29648] FIX: HDFFV-8486 
h5tbmake_table_f is missing the fill_data parameter (which is in the C counterpart)

ADDED NEW API: h5tbread_table_f

Tested: platypus, ostrich
 2016-04-06 13:07:17 -05:00
Scot Breitenfeld
54d598aa44 [svn-r29646] FIX: HDFFV-9522 
Add support for variable length datatypes in the High Level H5LT Fortran APIs

Tested: platypus (gnu)
 2016-04-06 10:17:02 -05:00
Quincey Koziol
b84fc45857 [svn-r29644] Description: 
Finish correcting initializer for chunked layouts.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (to minor to require h5committest)
 2016-04-05 23:18:54 -05:00
Quincey Koziol
c622ca83f5 [svn-r29640] Description: 
Add missing inializer from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial
    (Too minor to require h5committest)
 2016-04-05 11:52:38 -05:00
Dana Robinson
939da8a35e [svn-r29638] Added new chunk index types to trace code. 
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
 2016-04-05 09:49:50 -05:00
Quincey Koziol
5d46ad9b39 [svn-r29635] Description: 
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-05 02:12:56 -05:00
Quincey Koziol
a816d03108 [svn-r29632] Description: 
Align w/revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/parallel
    (h5committest forthcoming)
 2016-04-04 23:11:54 -05:00
Quincey Koziol
4282c5f01f [svn-r29630] Description: 
Minor style cleanups, from revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel and production
    (too minor to require h5committest)
 2016-04-04 22:45:38 -05:00
Quincey Koziol
c7d4951634 [svn-r29626] Description: 
Revise method of invoking object flush callback.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-04-04 17:22:56 -05:00
Quincey Koziol
2221a9a96e [svn-r29625] Description: 
Removed unused routines

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial & parallel
    (h5committest forthcoming)
 2016-04-04 17:14:54 -05:00
Dana Robinson
0024745638 [svn-r29620] Merge of r29619 from revise_chunks. Minor H5Fpublic.h comment update. 
Tested on: 64-bit Ubuntu 15.10 (build only, no code changes)
 2016-04-04 16:01:45 -05:00
Quincey Koziol
86f401d740 [svn-r29614] Description: 
Bring updated code for setting chunk size information from revise_chunks
branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-03 04:18:25 -05:00
Quincey Koziol
3cd705e56e [svn-r29612] Description: 
Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-04-03 03:48:50 -05:00
Quincey Koziol
9d2178ab88 [svn-r29607] Description: 
Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
    (h5committest forthcoming)
 2016-04-02 04:39:32 -05:00
Scot Breitenfeld
e45885dea9 [svn-r29603] HDFFV-9746 Add test for "/" for H5LTpath_valid 
Tested: jam (gnu)
 2016-04-01 16:30:24 -05:00
Allen Byrne
8e41b14811 [svn-r29601] Cleanup case of CMake commands in tools. 
Update CTestCustom file for new tests.
Add connection from HDF5_ENABLE_USING_MEMCHECKER cmake option to library define USING_MEMCHECKER.
 2016-03-31 09:02:24 -05:00
Scot Breitenfeld
018f92063e [svn-r29599] added comments to source 2016-03-30 14:11:41 -05:00
Scot Breitenfeld
6b21276650 [svn-r29591] Changed buf variable in h5awrite_f from INOUT to IN 2016-03-29 09:46:58 -05:00
Allen Byrne
261f8c8361 [svn-r29560] Remove list and check of flags, defer to library function for checking, which will return an error. That error then produces a HDF5FunctionArgument exception instead of IllegalArgument exception. 2016-03-24 12:21:04 -05:00
Allen Byrne
d9ab44fe46 [svn-r29557] Add comments to CMake macros and do append error file 
revise_chunks rev 29556
 2016-03-24 10:59:00 -05:00