Commit Graph

3094 Commits

Author SHA1 Message Date
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
Allen Byrne
73efe72e0d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '73d7f7e7d37b869ce9c39cc8e648ef50d563fc93':
  Updated the threadsafety test to use error macros instead of asserts.
2018-05-21 09:11:39 -05:00
Vailin Choi
b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Dana Robinson
2c3b598158 Updated the threadsafety test to use error macros instead
of asserts.
2018-05-14 00:44:02 -07:00
Allen Byrne
37c27afde0 Fix MPI on Windows by adding MPI include folder 2018-05-09 14:29:44 -05:00
Allen Byrne
f1a668a3b5 Correct COMPILE defs usage 2018-05-09 08:53:25 -05:00
Allen Byrne
fde2d1fe4a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '1f8cb03e11a46f853881f45dac18eff2dd68401e':
  Fix errors in Makefile.am files that cause "make check" to repeat test, even when there are no changes to source files.  (Also add a ggenerated script to the list of files cleaned up on 'make distclean')
  Further minor cleanups
  Checkpoint normalization against incoming hyperslab / selection / dataspace improvements.
2018-04-30 11:05:26 -05:00
Quincey Koziol
4411bc27ac Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:05:18 -05:00
Quincey Koziol
01f196b31a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:04:21 -05:00
Quincey Koziol
83e2ea681d Fix errors in Makefile.am files that cause "make check" to repeat test, even
when there are no changes to source files.  (Also add a ggenerated script
to the list of files cleaned up on 'make distclean')
2018-04-28 21:38:49 -05:00
Allen Byrne
2347bffaa2 TRILABS-19 remove add_defintions and use generator expressions 2018-04-26 16:41:04 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
6c82c49dd5 TRILABS-20 set a compiler name on all project commands 2018-04-20 10:11:55 -05:00
Allen Byrne
46f2a2a432 TRILABS-19 Initial conversion of include_directories to targets 2018-04-17 15:57:58 -05:00
Allen Byrne
db3d744f25 HDFFV-10444 fix soversion numbers for libraries 2018-04-10 08:55:17 -05:00
Allen Byrne
38cccb23ba Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '3211e907f4f9349ba7510d70cfbcc6ee36d99c58':
  Remove vestiges of H5_DEBUG_BUILD macro, switching it to the more standard H5CX_DEBUG form.
  Minor warning cleanup while working on VOL issues.
2018-04-09 07:14:53 -05:00
Allen Byrne
5e943e85e2 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '048ae59d2970dd21810577c999f756c028b6faaf':
  Correct errors with non-"instrumented library" builds (production & parallel, generally speaking).
  Update java error stack tests
  Revert using H5MF_sect_small_can_shrink and H5MF_sect_small_shrink for the file's free space manager (and add a comment about them).
  Add comment for the file flush when the file low / high bounds are changed after a file is open.
  Expanded comments abuot H5CX_t fields.
  Add an assert to verify that we don't write when between MPI_Barrier() calls during a flush.
  Add comments for internal structs.
  Remove redundant 'is_collective' parameter from H5CX_set_loc.
  Correct typo in comment.
  Revert some tangential code cleanups.
  Add API context source files to CMake configuration file.
  Corrections for parallel I/O & tests.
  Update handling of reporting for breaking collective I/O when the default DXPL is used.
  Update encoded DXPLs to reflect changes in properties.
  Correct typo for error checking malloc return value.
  Refactor H5CX code to reduce duplication.
  Cleanup API context function usage.
  Add API context interface and use it throughout the library.
2018-04-06 09:21:06 -05:00
Dana Robinson
02039e0a91 Minor warning cleanup while working on VOL issues. 2018-04-06 00:11:18 -07:00
Allen Byrne
f6a5236e43 Use var instead of absolute number 2018-04-05 08:16:13 -05:00
Quincey Koziol
c135db3365 Update encoded DXPLs to reflect changes in properties. 2018-03-20 13:52:04 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
c31460c1b7 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 2018-03-18 18:38:21 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Allen Byrne
a32178ba94 Fix memory leak simply by capturing allocation in var 2018-03-16 09:03:08 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Vailin Choi
a8afb3ab3b Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1':
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-12 18:00:05 -05:00
Binh-Minh Ribler
0684235b36 Merge pull request #935 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr:develop to develop
Notes for gen_bounds.c

* commit '8155dba8d7cb8dbe2532c17c7ea5a27f52e3095b':
  Improve code Description:     Added notes and changed argument to H5Fcreate to clarify the     latest situation Platforms tested:     Linux/64 (jelly)
2018-03-12 11:25:03 -05:00
Vailin Choi
f08b8fa10e Enhancement to the tool h5clear (HDFFV-10360) 2018-03-12 09:02:15 -05:00
Binh-Minh Ribler
4731819b0e Improve code
Description:
    Added notes and changed argument to H5Fcreate to clarify the
    latest situation
Platforms tested:
    Linux/64 (jelly)
2018-03-09 20:44:37 -06:00
Allen Byrne
24c62ba7fe Change CMake min to 3.10 2018-03-09 12:32:06 -06:00
Binh-Minh Ribler
7c293908a7 Improving tests
Description:
    Fixed typos that caused daily test failure on Ostrich
Platforms tested:
    Linux/64 (jelly)
    Linux/ppc64 (ostrich)
2018-03-09 00:35:42 -06:00
Binh-Minh Ribler
e1721103c5 Merge pull request #901 in HDFFV/hdf5 from ~BMRIBLER/version_bounds_bmr:develop to develop
tests for version bounds.

* commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c':
  Miscellaneous test fixes Description:     - dtypes.c: added the use of highest version of nested datatypes to       verify the datatype's version.     - miscellaneous typos Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Added h5repack tests Description:     Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested:     Linux/64 (jelly) - cmake
  Added bounds_latest_latest.h5
  Misc improvement Description:     - Added test file for h5repack test VERIFY_INVALIDBOUNDS     - Updated MANIFEST     - Removed unnecessary header file in test     - Update h5repack script to copy the new file to the test location Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Improving tests Description:     - Added test for version bounds with nested datatypes     - Added script for additional version bound test in h5repack     - Cleaned up tests for consistency     - Removed extra included header files Platforms tested:     Linux/64 (jelly)     Linux/64 (moohan)     Darwin (osx1010test)
2018-03-07 15:09:15 -06:00
Binh-Minh Ribler
f05f9d4cff Miscellaneous test fixes
Description:
    - dtypes.c: added the use of highest version of nested datatypes to
      verify the datatype's version.
    - miscellaneous typos
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-03-06 11:41:33 -06:00
Allen Byrne
960a1d55ee plist testfiles need to be copied into VFD test folders as well 2018-03-06 09:45:26 -06:00
Allen Byrne
5a8ac1fb6c Fix test loop 2018-03-01 08:33:24 -06:00
Allen Byrne
cecb59f93f Correct if-endif block 2018-03-01 08:26:33 -06:00
Allen Byrne
23ceda33b3 Correct use of LIST var 2018-02-28 09:01:38 -06:00
Binh-Minh Ribler
4899c9ab47 Misc improvement
Description:
    - Added test file for h5repack test VERIFY_INVALIDBOUNDS
    - Updated MANIFEST
    - Removed unnecessary header file in test
    - Update h5repack script to copy the new file to the test location
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-02-27 18:04:29 -06:00
Allen Byrne
93744615f9 Fix list var 2018-02-27 14:04:34 -06:00
Allen Byrne
90f01d5b16 Fix IN_LIST usage 2018-02-27 13:33:38 -06:00
Allen Byrne
b36bad53d9 Inc CMake min, Add new tests, rework test CMake files 2018-02-27 12:57:07 -06:00
Vailin Choi
2fb0b8c353 Fix for daily test failure for test/fheap.c
The failure occurs when HDF5TestExpress is set to 0.
The check for file size check fails due to persisting free-space when creating the file.
The fix is to set libver bounds (v18, latest) when creating the test file.
2018-02-18 20:24:15 -06:00
Binh-Minh Ribler
39e3da7563 Improving tests
Description:
    - Added test for version bounds with nested datatypes
    - Added script for additional version bound test in h5repack
    - Cleaned up tests for consistency
    - Removed extra included header files
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (moohan)
    Darwin (osx1010test)
2018-02-17 16:18:37 -06:00
Binh-Minh Ribler
b65ec9d05b Fixed daily test failure
Description:
    Added missing H5Pclose that caused daily test failure.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (moohan)
    Darwin (osx1010test)
2018-02-16 22:55:42 -06:00
Vailin Choi
76d70073c6 Fix for daily test failure
Fix for test/testhdf5.sh for configuration with --enable-using-memchecker.
2018-02-14 16:11:12 -06:00
Allen Byrne
8ad35726ea Merge pull request #895 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e09ccc4a2168e79b9f7500b8ec68ed5f829c8604':
  More includes cleanup
  Cleanup overuse of include files
2018-02-14 14:23:31 -06:00
Allen Byrne
e09ccc4a21 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0b98ddd12324e5dae17dd8135bf72094d66e5d17':
  Fixed DT failure Description:     Added a missing return statement to a non-void function. Platforms tested:     Linux/64 (jelly)     Linux/32 (jam)     Darwin (osx1010test)
2018-02-14 12:35:29 -06:00
Vailin Choi
f5c5eba783 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop 2018-02-14 12:04:59 -06:00
Vailin Choi
2ee6908b6a Fix for daily test failure for configuration with --disable-deprecated-symbols 2018-02-14 12:03:32 -06:00