Code cleanup
Description:
Use enum type instead of int for datatype conversion exception callback
routine.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Code cleanup
Description:
Fix logic error in previous checkin and also finish refactoring I/O
initialization, including simplifying all the collective & parallel cases
into a more unified mechanism.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/ & w/o parallel
Linux 2.4 (mir)
Bug fix
Description:
Fix logic error for non-parallel file I/O with library built for parallel
I/O capability.
Platforms tested:
Linux 2.4 (mir) w/parallel
New Feature.
Description:
Added code and changes so that h5perf (pio) can be built by
standalone mode (that is built by just "h5pcc" without all these
internal files.) With the standalone mode, h5perf can be built
against different versions of hdf5 library and to contrast the
performance among them.
(Note that pio_standalone.c and pio_standalone.h are used in
standalone build only.)
Platforms tested:
Tested in copper and heping.
Code cleanup & bug fix
Description:
Refactor recent collective chunk changes to simplify them. Also, compute
the number of chunks by checking the number of objects in the chunk skip list
instead of getting the boundaries of the selection and counting the chunks that
it overlaps, which is faster and computes correct number for certain selections.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
Code cleanup
Description:
Refactor, simplify and cleanup Kent's recent checking for collective
chunk I/O. There's a bug that I need to talk to Kent about and some more
cleanups still, but this is reasonable for an interim point.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor for h5committest
bug fix.
Description:
The code for functions snprintf and vsnprintf ignored the size parameter.
It could overflow the buffer. The two functions are supported by many
platforms now. Disable the code and see what platform(s) still need
it.
Platforms tested:
h5committested
Misc. update:
Description: In the macro H5T_CONV_Xx_CORE definition, one line said
"} else if (*((ST*)S) < (D_MIN)) {". It caused problem on TFLOPS because
it defines LLONG_MIN as a hexadecimal value instead of decimal value.
Solution: Changed the line to "} else if (*((ST*)S) < (DT)(D_MIN)) {" to
avoid the problem. (Need to change other similar places when time permits.)
Platforms tested: fuss - simple change.
Modified collective chunk Io test
Description:
One test(collective chunk IO test 4) is no longer needed. Comment out first.
The code should be cleaned up later.
Solution:
Platforms tested:
Misc. update:
bug fix for collective chunk IO, phase 1
Optimization hasn't been done yet, the collective chunk IO bug should be fixed.
Description:
In chunking storage, memory space and file space will be remapped, So to check
whether file space and memory space are regular in order to use optimized MPI derived
datatype for collective call one has to check per-chunk wise instead of per hyperslab wise.
Even a regular memory space will be stored in span-tree and will be irregular before chunk IO.
Solution:
1. Check file space and memory space per chunk wise instead of per hyperslab wise.
2. For collective IO mode, number of chunks covered by hyperslab may be different. Since we are
handing per chunk per IO, for the extra chunk IO for some(not all) processors, collective mode will
cause program hanged. So for the extra chunk Io mode independent IO has to be used.
3. On some platforms, Complex MPI derived datatype is not working, so we have to use independent IO for collective IO mode if the selection is irregular. However, when the selection is regular, we do want to use collective IO since that will improve performance. Special cares have to be added for this case.
Platforms tested:
copper(AIX 5.1) Linux(heping mpich 1.2.6), Teragrid machine, Cobalt(altix), modi4
Misc. update:
Big fix
Description:
A group opened by dereferencing a object reference would not work for
H5Giterate(), due to the local heap & B-tree information not being cached.
Solution:
Get the local heap & B-tree info & point to that structure instead of
the group entry for the group.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Code cleanup
Description:
Add a check for the correct type of ID for H5Eclose_stack()
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Description: The change made yesterday regarding repart_test.c wasn't right.
Solution: Roll back to v1.6 until a solution is figured out.
Platforms tested: fuss - simple change.
Maintenance on Windows
Description:
Update workspace to include newly added file H5Fsfile.c
Solution:
Platforms tested:
MSVS 6.0 on Windows XP
Misc. update:
Maintenance on windows
Description:
Update project file to include the newly added file H5Fsfile.c
Solution:
Platforms tested:
MSVS 6.0 on windows xp
Misc. update:
Description: repart_test.c was mistakenly treated as a tool, instead of a test program.
Solution: Took it out of the list of tools.
Platforms tested: fuss - simpl change.
Code cleanup
Description:
Bring some of the cleanups from the external link coding (which isn't
checked in yet) back into CVS as an intermediate checkin.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Description: repart_test.c was mistakenly treated as a tool, instead of a test program.
Solution: Took it out of the list of tools.
Platforms tested: fuss - simple change.
Bug fix & code cleanup
Description:
Fix another bug in the file mounting code and refactor the unmount
code that it is simpler.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4
Too minor to require h5committest
Bug fix and improvement.
Description:
The test output were not displayed for parallel tests.
The serial tests output were always displayed whether the test was
actually ran this time or not.
Solution:
Moved the display of test output inside the target where the actual
tests are run.
Platforms tested:
Tested in heping using pp and fortran.
Bug fix and improvement.
Description:
The test output were not displayed for parallel tests.
The serial tests output were always displayed whether the test was
actually ran this time or not.
Solution:
Moved the display of test output inside the target where the actual
tests are run.
Platforms tested:
Tested in heping using pp and fortran.
Description:
Added missing member functions:
H5::CompType::getMemberArrayType
H5::CompType::getMemberVarLenType
H5::AbstractDs::getArrayType
H5::AbstractDs::getVarLenType
H5::CommonFG::openArrayType
H5::CommonFG::openVarLenType
H5::PropList::copyProp -- this will replace the current
H5::PropList::copyProp in later releases due
to incorrect prototype.
H5::IdComponent::getHDFObjType
Bug fix and code minor cleanup.
Description:
The attempt to redirect stderr together to the log files were
done in the wrong order such that stderr output goes to where
stdout WAS. Fixed that.
Code minor cleanup--use shell variables to hold the name of the
log file and the test instead of generating them repeatedly. This
makes easier code reading, less crowded and avoid typos.
Only conclude.in is changed. The Makefile.in changes are all
derived from automake.
Platforms tested:
h5committested.
Bug fix and code minor cleanup.
Description:
The attempt to redirect stderr together to the log files were
done in the wrong order such that stderr output goes to where
stdout WAS. Fixed that.
Code minor cleanup--use shell variables to hold the name of the
log file and the test instead of generating them repeatedly. This
makes easier code reading, less crowded and avoid typos.
Only conclude.in is changed. The Makefile.in changes are all
derived from automake.
Platforms tested:
h5committested.
Misc. update:
Description:
Added wrapper for H5Iget_type.
Added try/catch to many APIs that call private functions so that more
specific information can be provided at failure.
Added IdComponent::inMemFunc to help providing specific info.
Added const to parameters of several functions that missed that.
Platforms tested:
Linux 2.4 (heping)
SunOS 5.8 64-bit (sol)
AIX 5.1 (copper)
IRIX64 with -n32 (modi4)
HPUX 11.00 (kelgia)
bug fix.
Description:
Fortran test, fflush2, depends on a file created by fflush1.
Fixed Makefile to reflect such a dependency.
Platforms tested:
heping.
bug fix.
Description:
test program used fortran STOP to end the program even when there
was an error. STOP does not exit with non-zero. Therefore, make
or other programs could not detect an error has occurred.
Solution:
Wherever it is appropirate, replace STOP with h5_exit_f statments.
Platforms tested:
Tested in heping.
Description:
Changed CompType::getMemberClass to use H5Tget_member_class
instead of going around unneccesarily.
Changed "int member_num" to "unsigned member_num" of several
member functions of CompType, per the C library change.
Platforms tested:
Linux 2.4 (heping)
Linux 2.4 w/PGI (colonelk)
AIX 5.1 (copper)
upgrade.
Description:
Changed all appropriate error stack calls to the new HSYS_ERROR macro
call in order to push system error message to the stack too.
Platforms tested:
heping.
Misc. update:
Code tweak
Description:
Add in a couple of minor changes from Elena's version of pushing the
system error information on the error stack.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Too minor to require h5committest
Feature.
Description:
Added HSYS_ERROR macro to retrieve and push system error message to
the error stack.
Added the related H5E_SYSERRSTR error code.
This allows system error messages be shown to users too. Thus
give a better explanation of what the errors are.
Platforms tested:
h5committested.
Port to Red Storm
Description:
Initial version to configure for SNL Red Storm. To configure for it, do
./configure --host=x86_64-redstorm-linux
Platforms tested:
Tested in Red-storm. Many things are still failing but this will
make the configure part easier.
Misc. update:
Makefile feature
Description:
'make check-clean' now cleans *.h5 files created by tests as well as
.log and .chkexe files.
Solution:
check-clean is now a separate target in its own right, which cleans less
than mostlyclean (check-clean < mostlyclean < clean < distclean).
Platforms tested:
mir, heping, modi4 (serial and parallel)
Purpose:
Bug fix
Description:
Fixed a Makefile bug that would cause make clean to fail on some platforms
when C++ is enabled.
Platforms tested:
sleipnir, mir
Misc. update:
