Commit Graph

1410 Commits

Author SHA1 Message Date
Allen Byrne
3fcfb36748 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'd0aeefd6455d6877afd934e238362636a86e4b42':
  Final merge of page buffering branch to develop
2017-03-14 14:31:10 -05:00
Allen Byrne
2687321987 HDFFV-10138 Merge app framework to examples 2017-03-14 12:14:44 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Allen Byrne
e545f474a5 Correct filename typo 2017-02-22 08:43:34 -06:00
Allen Byrne
71cea2112f Add new cmake options file 2017-02-20 09:11:44 -06:00
Quincey Koziol
a9808853d5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop_merge_cache_image_06 2017-01-28 23:27:08 -08:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
Dana Robinson
2cac1c0637 Moved remaining SWMR-related test files to develop. 2017-01-26 14:34:12 -05:00
Allen Byrne
a8e4f6426e Add autotools version of plugin tests for UD filters 2017-01-17 17:11:27 -06:00
Allen Byrne
406db26f51 HDFFV-9994 add UD tests for tools 2017-01-17 13:46:11 -06:00
Allen Byrne
244faaa0d0 HDFFV-10094: upgrade cmake command conventions
Also converted tests to use macros
2017-01-11 14:02:34 -06:00
Binh-Minh Ribler
d6d411f0af Description:
Added
        + ./c++/src/H5LaccProp.cpp
	+ ./c++/src/H5LaccProp.h
2017-01-05 15:42:26 -06:00
Dana Robinson
e41a15b7f0 Added a missing test file needed for the flushrefresh script. 2016-12-30 10:06:07 -05:00
Quincey Koziol
eefddf2813 Bring new/updated tests from revise+chunks branch: flush1/flush2 update and
flushrefresh test.  (Also refactor of message send / wait code)
2016-12-19 20:44:54 -08:00
Quincey Koziol
ab3963b28e Merge pull request #207 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop_swmr_merge_06 to develop
* commit 'f8cfbee05e26a815134cd1f1fb0ad87d8d9b16dd':
  Merge SWMR-related testing to existing tests.
  Bring over tweak for missing environment variable.
  Update CMake configuration files with SWMR accumulator changes.
  Add missing accumulator test.
  Merge SWMR-oriented accumulator tests from revise_chunks to develop.
2016-12-18 14:17:02 -06:00
Quincey Koziol
b772be716d Merge SWMR-oriented accumulator tests from revise_chunks to develop. 2016-12-18 00:41:13 -08:00
Quincey Koziol
fc69eeb991 Bring Java SWMR changes from revise_chunks to develop branch 2016-12-17 22:21:48 -08:00
hdftest
e0b353b6f5 Snapshot version 1.9 release 235 2016-12-16 15:23:58 -06:00
Quincey Koziol
57afb68e46 Bring SWMR-related tools changes from revise_chunks to develop. 2016-12-11 11:25:08 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Dana Robinson
57a8bb6081 Adds a script to undo the action of autogen.sh. Useful
when git complains about Makefile.in clobbers, etc.
2016-11-08 12:47:36 -05:00
Allen Byrne
ab66f6aa8c Merge pull request #133 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
Buildbot mktarball test pass

* commit '070362cc93793f3b4fa3cc9bc44b235461520408':
  Fix mktarball errors with Manifest
2016-11-04 10:52:43 -05:00
Allen Byrne
070362cc93 Fix mktarball errors with Manifest 2016-11-04 09:34:01 -05:00
Quincey Koziol
0d12ce44b2 Add cache logging test. 2016-11-03 23:27:10 -07:00
Quincey Koziol
f9ba956d69 Bring cache logging routines from revise_chunks branch to develop. 2016-11-03 22:40:56 -07:00
Quincey Koziol
7ac8215cbf Merge pull request #123 in HDFFV/hdf5 from ~KOZIOL/hdf5:develop to develop
* commit 'b2878dec04c120e4e3cdf00e943283e359862c84':
  Move cache debugging routines into separate module.
  Change file memory type for extending to default, and correct error in backward compatibility for multi VFD.
  Warning and whitespace cleanup.
  Improvements to the log VFD, for helping with SWMR debugging.
  Minor code cleanups.
  Uncomment line in test/objcopy.c, clean up whitespace and POSIX call wrapping in tools code.
2016-11-03 16:15:26 -05:00
Quincey Koziol
b2878dec04 Move cache debugging routines into separate module. 2016-11-03 11:55:42 -07:00
Allen Byrne
8bc45d450b Correct locations of tools files 2016-11-03 10:55:23 -05:00
Allen Byrne
7f2a83b6ab Split tools into src and test - update with new files or locations 2016-10-27 10:11:24 -05:00
Allen Byrne
7ea09c9292 HDFFV-9996: Test file to verify that that multiple params are parsed 2016-10-18 12:14:25 -05:00
Binh-Minh Ribler
68055cea63 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_CppAPI into develop 2016-10-12 08:08:34 -05:00
Binh-Minh Ribler
fdb1202f50 Description:
Added test file titerate.cpp.
Platform tested:
    Verified with bin/chkmanifest
2016-10-12 08:06:59 -05:00
Allen Byrne
8c49b6e05a HDFFV-9991: Remove uneeded file 2016-10-04 09:36:01 -05:00
Dana Robinson
cbc260e636 - Removed BRANCH.txt and MANIFEST entry
- Fixed a missing line in H5Dint.c
2016-09-30 13:06:12 -04:00
Dana Robinson
12fbb4426a Updated manifest. Was missing BRANCH.txt. 2016-09-19 13:04:07 -04:00
Dana Robinson
7f817fea7c Merge branch 'develop' into evict_on_close 2016-09-14 17:02:43 -04:00
lrknox
1bad18cc24 Add bin/pkgscrpts files to MANIFEST. 2016-09-02 12:57:27 -05:00
lrknox
a4c60918a7 Added .gitignore and .gitattributes files with contents from the last
git mirror or the hdf5 repository prior to the manual migration of the
hdf5 svn repository to the git repository in bitbucket.
Added entries to MANIFEST for the 2 new files.
2016-09-01 16:15:15 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.
Verified by user, who reported issue.
2016-08-25 13:57:27 -05:00
Allen Byrne
0e99aa203a [svn-r30240] JAVA-1920: Create a filter plugin test that has a filter which calls a HDF5 function. 2016-08-01 13:17:36 -05:00
Allen Byrne
db7a701126 [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests. 2016-08-01 12:03:56 -05:00
Allen Byrne
2387b1efbd [svn-r30211] Remove extra cygwin files 2016-07-20 13:31:15 -05:00
Allen Byrne
33e8407350 [svn-r30207] Change cygwin files to a single file 2016-07-20 10:03:09 -05:00
Scot Breitenfeld
304d85c3e7 [svn-r30196] HDFFV-9467: Use the same test programs for CMake and autotools
Tested: jelly (gnu)
2016-07-18 13:37:17 -05:00
Dana Robinson
75aa26981b [svn-r30084] First pass at the evict-on-close feature.
The features is controlled via H5Pset/get_evict_on_close()
and is currently enabled by default (it will be disabled
by default in the final implementation).

There is a bug in the code where the eviction of tagged
metadata fails due to some of the metadata being dirty,
resulting in error return values and test failures.
2016-06-15 13:55:59 -05:00
Quincey Koziol
d3396a7953 [svn-r30075] Description:
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk.  Also CMake support for h5format_convert and a bunch of
misc. cleanups.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-14 18:07:03 -05:00
Quincey Koziol
7a9e13afdb [svn-r30068] Description:
Bring metadata cache corking to trunk.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-13 12:49:39 -05:00
Quincey Koziol
d124a1fe47 [svn-r30035] Description:
Extract tagging routines into separate source module.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-06-06 01:41:16 -05:00
Quincey Koziol
e1f276f267 [svn-r30033] Description:
Extract epoch marker metadata client into separate source file.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-06-06 00:51:17 -05:00
Quincey Koziol
3384f4c0b9 [svn-r29985] Description:
Extract query routines into separate source module.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2016-05-30 04:06:26 -05:00
Quincey Koziol
bf566b775b [svn-r29969] Description:
Bring r29934 from revise_chunks branch to trunk:

(1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit.
(2) Modifications to better handle error recovery when conversion by h5format_convert fails.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-29 05:57:47 -05:00
Quincey Koziol
18ad868b23 [svn-r29924] Description:
Bring h5format_convert tool from revise_chunks branch to trunk.

Tested on:
    MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-12 15:47:03 -05:00
Allen Byrne
740d4a3b6f [svn-r29888] Correct spelling of testfile name 2016-05-04 13:13:54 -05:00
Allen Byrne
2f1b517021 [svn-r29884] VDS correction for get_space_status, with test change.
Add new files for repack tests.
Add repack tests for VDS files.
2016-05-04 11:38:08 -05:00
Allen Byrne
2d36359035 [svn-r29874] Move hl/tools/gif2h5 CMake code to subfolder. 2016-05-04 10:54:31 -05:00
Allen Byrne
f1633a5fe2 [svn-r29873] Java add missing APIs.
Adjust whitespace in H5.java for exception indentation.
Adjust whitespace in JNI for function signature formatting.
2016-05-04 10:52:40 -05:00
Quincey Koziol
2e3e3f9cd3 [svn-r29857] Description:
Bring H5LD* routines from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-03 01:27:55 -05:00
Quincey Koziol
a6ce3d4e45 [svn-r29850] Description:
Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk.  Brings along updated metadata cache
entry tagging, and the internal object flush routine.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-01 05:24:56 -05:00
Quincey Koziol
ac72823bc2 [svn-r29844] Description:
Minor rearrangements, to align with revise_chunks branch

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-30 22:18:00 -05:00
Quincey Koziol
4f831405cb [svn-r29779] Description:
Bring over some of the tool testing for the new chunk indices.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-24 03:21:09 -05:00
Quincey Koziol
b2d6d68d5d [svn-r29770] Description:
Bring 'none' chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-23 00:03:00 -05:00
Quincey Koziol
f7aff7d5cf [svn-r29738] Description:
Bring "single" chunk index from revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
    (h5committest forthcoming)
2016-04-18 23:21:12 -05:00
Quincey Koziol
36062736a5 [svn-r29722] Description:
Bring over more dataset tests from the revise_chunks branch.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-17 02:26:51 -05:00
Dana Robinson
e5c94192d7 [svn-r29659] Added fixed array chunk indexing from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           Autotools serial w/ Java, Fortran, & C++
2016-04-07 13:21:47 -05:00
Quincey Koziol
5d46ad9b39 [svn-r29635] Description:
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.

Tested on:
    MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-04-05 02:12:56 -05:00
Dana Robinson
8ed8520c19 [svn-r29537] Added "latest format" tests to h5copy and h5repack from revise_chunks.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial
           cmake serial
2016-03-23 14:32:59 -05:00
Allen Byrne
bb80d618be [svn-r29519] rename java test file because test modifies original file. 2016-03-22 14:58:35 -05:00
Allen Byrne
7f8f2feaf9 [svn-r29450] Separate error compare from output compare 2016-03-16 12:35:51 -05:00
Allen Byrne
f9dd7f1a80 [svn-r29403] Correct file location and add overview to makefile 2016-03-14 13:32:31 -05:00
Allen Byrne
85711b31d8 [svn-r29399] HDFFV-9717: add overview section to javadocs 2016-03-14 12:51:41 -05:00
Allen Byrne
40cdbe0b8d [svn-r29274] HDFFV-9698: fix subsetting issues with h5dump 2016-03-04 15:41:12 -05:00
Binh-Minh Ribler
2a714ac4c0 [svn-r29270] Description:
Updated for "Improve Packet Table library" commit 29269.
2016-03-04 14:50:52 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump
includes new data files
2016-02-23 15:23:46 -05:00
Scot Breitenfeld
c418bc964d [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers.
Tested: h5committest.new
2016-02-08 09:01:29 -05:00
Dana Robinson
20a3462089 [svn-r28977] Added autotools g++ compiler flags/warnings file to config/
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ C++
2016-01-27 01:23:40 -05:00
Binh-Minh Ribler
a7ef06d593 [svn-r28906] Description:
Added c++/test/tarray.cpp.
2016-01-15 10:57:00 -05:00
Larry Knox
c09393ed0a [svn-r28902] Remove 3 files in autom4te.cache from MANIFEST. They are generated by autogen.sh and were inadvertently added along with configure and Makefile.in files but are not checked in and should not be installed. Furthermore they are not generated on all systems by autogen.sh and cause chkmanifest to fail when run be release scripts. 2016-01-14 16:56:16 -05:00
Dana Robinson
b29d6174e1 [svn-r28881] Merged r28880 from revise_chunks. Adds a script to flip maint mode.
Tested on: linux VM
2016-01-13 11:25:11 -05:00
Allen Byrne
af88e57c26 [svn-r28866] HDFFV-9639: new files 2016-01-12 15:38:20 -05:00
Dana Robinson
ae8e3348cf [svn-r28655] Updated MANIFEST :/ 2015-12-15 00:38:03 -05:00
Albert Cheng
bbfd8a30aa [svn-r28373] HDFFV-9573: Our helper tests bin/release and bin/h5vers are not working properly
bin/release uses the content of MANIFEST file to build the release tarball. But all the files generated by autogen had been removed. Therefore the release would not contain those needed generated files for a proper release.

Solution: Added all those generated files to the tail of MANIFEST and titled it accordingly. (Somehow bin/chkmanifest does not complain against these entries though they are not svn managed. This needs further investigation.)

Test: bin/release generated the release tarball in jam, then use it in Platypus to do a full build (--enable-fortran --enable-cxx). All passed.
2015-11-17 09:37:17 -05:00
Quincey Koziol
5f6e580533 [svn-r28346] Description:
Bring in cleanups from revise_chunks branch.

Tested on:
    MacOSX/64 10.11.1 (amazon) w/serial & parallel
    (too minor to require full h5committest)
2015-11-14 22:32:00 -05:00
Dana Robinson
f7b73969f3 [svn-r28332] Updated autogen.sh to not run flex/bison.
This was giving a lot of users headaches and the parser code rarely
changes. There is now a new script (bin/genparser) which can be
run as needed.

Tested on: Ubuntu 15.10 (x86_64 Linux 4.2.0)
    gcc 5.2.1, flex 2.5.39, bison 3.0.2
2015-11-13 06:24:43 -05:00
Allen Byrne
6a6e921d2f [svn-r28152] Correct define vs variable usage
Add VS2015
2015-10-20 17:11:10 -05:00
Allen Byrne
22f78e766c [svn-r27974] Change distribution of scripts 2015-10-06 13:52:48 -05:00
Elena Pourmal
086904a50d [svn-r27969] Added autogen.sh to the list of the distributed files. 2015-10-06 12:15:59 -05:00
Binh-Minh Ribler
f416522d56 [svn-r27962] Description:
Added c++/src/H5OcreatProp.[h/cpp]
    Checked with bin/chkmanifest
2015-10-05 23:35:15 -05:00
Quincey Koziol
718b311c11 [svn-r27860] Description:
Sync w/changes on trunk

Tested on:
    Not necessary, text only...
2015-09-23 10:40:48 -05:00
Scot Breitenfeld
1cd606b5e0 [svn-r27854] fixed typo in name of file 2015-09-22 10:26:25 -05:00
Quincey Koziol
4ad84456b3 [svn-r27850] Description:
Sync w/trunk

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-09-21 19:35:47 -05:00
Allen Byrne
9edd184ae9 [svn-r27846] Fix generated files process.
Add script for post processing of flex/bison files.
2015-09-21 15:05:23 -05:00
Dana Robinson
209df7c3b0 [svn-r27839] Removed generated autotools stragglers missed in trunk sync. 2015-09-21 03:36:01 -05:00
Quincey Koziol
0695d6366a [svn-r27835] Description:
Sync w/trunk.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2015-09-20 21:18:45 -05:00
Dana Robinson
132ab9c2f3 [svn-r27828] Removed Perl-generated header files and H5LT parse code created by flex/bison.
Tested on: jam
2015-09-18 15:46:04 -05:00
Neil Fortner
d23cc2da70 [svn-r27806] Fix property list serialization for values encoded by H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.

Tested: jam, koala, ostrich (h5committest), ummon
2015-09-16 14:55:38 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Dana Robinson
1177e64925 [svn-r27787] Merge of r27632-27674 from the trunk.
Tested on: h5committest
2015-09-15 08:01:01 -05:00
Dana Robinson
2416d5e8ce [svn-r27776] Fixed MANIFEST
Tested on: bin/chkmanifest
2015-09-14 15:13:12 -05:00