Commit Graph

19178 Commits

Author SHA1 Message Date
Larry Knox
bae744199b Add more specific batch scripts.
Add script raybsub to handle submitting .lsf files on ray with bsub <
script.lsf syntax that we couldn't handle with CMake.
Add hpc-cmake-tgz option for bin/release.
2019-01-31 14:22:52 -06:00
Larry Knox
252beb50b6 Account info can be submitted as an argument to run the batch scripts.
Special versions for sandia are not needed.
2019-01-28 12:52:14 -06:00
Larry Knox
0ef4c812c7 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2019-01-28 12:51:12 -06:00
Larry Knox
277f57d371 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '9149d5a5352de4e0b9a2e57c91525a6cad767760':
  Revert build name setting
2019-01-28 12:49:00 -06:00
Larry Knox
64114e331a Add HDF5options.cmake files for serial and parallel tests on HPC
machines (where tests are to be run as batch jobs.
Add README_HPC file with instructions for setting up configuration
to use batch scripts for running tests on HPC machines and some
pointers for cross compiling.
2019-01-28 12:43:35 -06:00
Allen Byrne
9149d5a535 Merge pull request #1504 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f26ee27b1fd85d192b37d9e45fb6d20f1b7e23db':
  Revert build name setting
2019-01-28 08:24:16 -06:00
Larry Knox
cee36ca40d Remove knl configuration from ctestS.sl.in.cmake.
Add sandia batch files with account info.
2019-01-27 17:55:44 -06:00
Allen Byrne
f26ee27b1f Revert build name setting 2019-01-27 16:55:39 -06:00
Larry Knox
11e74daddd Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2019-01-26 16:46:31 -06:00
Larry Knox
b91cb20c69 Add batch files with batch parameters specific to cori and ray.
Release.txt entry for skipping long double dt_arith tests on ppc64.
2019-01-26 16:44:09 -06:00
Binh-Minh Ribler
7447f636a4 Merge pull request #1503 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop
Added test file for CMake

* commit '55d1931dc6af168adc3804586a0da22287b29187':
  Added test file for CMake
2019-01-26 12:39:15 -06:00
Binh-Minh Ribler
55d1931dc6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-01-26 11:59:45 -06:00
Binh-Minh Ribler
f522479035 Added test file for CMake 2019-01-26 11:58:52 -06:00
Allen Byrne
adc9b8b27a Merge pull request #1499 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'ad906dc708fc803e8c5f17963fafa63591d3cc8d':
  Invalid position of declaration fixed.
  Fix CMake on Windows
2019-01-26 09:48:40 -06:00
Allen Byrne
ad906dc708 Invalid position of declaration fixed. 2019-01-25 15:21:11 -06:00
Dana Robinson
dfaf51fda4 Merge pull request #1500 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:valgrind_fixes to develop
* commit '3fac85c00d6253f7b2c96ca46c7b9718d0203029':
  Fixed a bug identified by valgrind in the cork test.
2019-01-25 12:47:02 -06:00
Dana Robinson
3fac85c00d Fixed a bug identified by valgrind in the cork test. 2019-01-25 09:58:50 -08:00
Allen Byrne
822caec907 Fix CMake on Windows 2019-01-25 11:36:46 -06:00
Binh-Minh Ribler
395cfc9f1b Merge pull request #1498 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop
* commit '0247f7b78d056b04fa08f74a2d4c4eea37f48d22':
  Added data file for test and updated MANIFEST
2019-01-25 10:47:03 -06:00
Allen Byrne
8f1d895d17 Merge pull request #1496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '73fcbbee97c6385fb2b5009e5858ae1d6c28b3c3':
  CMake fix
  Java html fix and cmake update
  Update CMake
2019-01-25 08:40:47 -06:00
Allen Byrne
73fcbbee97 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2fe69e7639198b174da393e47a029d0ac35b31c8':
  Added test for HDFFV-10588
  Fixed HDFFV-10684
  Fixed HDFFV-10586 and HDFFV-10588 Description:     HDFFV-10586 CVE-2018-17434  Divide by zero inh5repack_filters         Added a check for zero value     HDFFV-10588 CVE-2018-17437  Memory leak in H5O_dtype_decode_helper         This is actually an Invalid read issue.  It was found that the         attribute name length in an attribute message was corrupted,         which caused the buffer pointer to be advanced too far and later         caused an invalid read.         Added a check to detect attribute name and its length mismatch.  The         fix is not perfect, but it'll reduce the chance of this issue when a         name length is corrupted or the attribute name is corrupted. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
2019-01-25 08:28:53 -06:00
Binh-Minh Ribler
0247f7b78d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-01-25 00:20:28 -06:00
Binh-Minh Ribler
51e0107d18 Added data file for test and updated MANIFEST 2019-01-25 00:19:16 -06:00
Binh-Minh Ribler
2fe69e7639 Merge pull request #1479 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop
HDFFV-10586 and HDFFV-10588

* commit '25cd1ab02b9ddaf58a4f5422f4ab4fde411e050a':
  Added test for HDFFV-10588
  Fixed HDFFV-10684
  Fixed HDFFV-10586 and HDFFV-10588 Description:     HDFFV-10586 CVE-2018-17434  Divide by zero inh5repack_filters         Added a check for zero value     HDFFV-10588 CVE-2018-17437  Memory leak in H5O_dtype_decode_helper         This is actually an Invalid read issue.  It was found that the         attribute name length in an attribute message was corrupted,         which caused the buffer pointer to be advanced too far and later         caused an invalid read.         Added a check to detect attribute name and its length mismatch.  The         fix is not perfect, but it'll reduce the chance of this issue when a         name length is corrupted or the attribute name is corrupted. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
2019-01-24 17:07:57 -06:00
Allen Byrne
37f5c682b6 CMake fix 2019-01-24 16:36:47 -06:00
Allen Byrne
62277207a4 Java html fix and cmake update 2019-01-24 15:56:42 -06:00
Binh-Minh Ribler
25cd1ab02b Added test for HDFFV-10588
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
2019-01-24 09:42:19 -06:00
Allen Byrne
41010b8d1e Update CMake 2019-01-23 17:25:41 -06:00
Allen Byrne
f0e2fc6c62 Merge pull request #1491 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f033214796c383a9018dd760e92257dc27d7b852':
  Add clear objects to ignore tests
  Add clear objects to ignore tests
  Add new clear tests to ignore list
  Cleanup variable names
  HDFFV-10685 Correct syntax
  HDFFV-10685 Corrected version
  HDFFV-10685 Always set Mac version flags - use soversion
2019-01-22 16:59:50 -06:00
Allen Byrne
f033214796 Add clear objects to ignore tests 2019-01-22 16:30:37 -06:00
Allen Byrne
182e5f7556 Add clear objects to ignore tests 2019-01-22 16:26:43 -06:00
Allen Byrne
036a8e4fe1 Add new clear tests to ignore list 2019-01-22 16:18:22 -06:00
Allen Byrne
cdf9cb0efb Cleanup variable names 2019-01-22 15:38:32 -06:00
Allen Byrne
91249b9ad5 HDFFV-10685 Correct syntax 2019-01-22 12:54:34 -06:00
Allen Byrne
ff08bed268 HDFFV-10685 Corrected version 2019-01-22 12:29:45 -06:00
Allen Byrne
ce64bf57ce HDFFV-10685 Always set Mac version flags - use soversion 2019-01-22 12:10:09 -06:00
Larry Knox
811b4bea8e Merge pull request #1489 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e6be5560882c2f598b3a0ddab7d9d29a552fcb10':
  MPI vars need passed in, change to grepTest
2019-01-20 22:36:26 -06:00
Binh-Minh Ribler
d584b233a5 Fixed HDFFV-10684
Description:
    The test for HDFFV-10588 has revealed a bug in H5Ewalk.
    H5Ewalk did not stop midway even when the call back function returns
    H5_ITER_STOP. This is because a condition is missing from the for
    loops in H5E__walk causing the callback functions unable to stop until
    all the errors in the stack are iterated. Quincey advised on the final
    fix.  In this fix, "status" is switched to "ret_value" and HGOTO_ERROR
    to HERROR, and the for loops won't continue when "ret_value" is not 0.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1010test)
2019-01-20 17:46:28 -06:00
Allen Byrne
e6be556088 MPI vars need passed in, change to grepTest 2019-01-20 16:47:50 -06:00
Allen Byrne
0c15df15e3 Merge pull request #1485 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '769837f3ae93f4cae3486aef95c1c580a9946406':
  Add parrallel runTest.cmake for ph5example
  Add missing depends to last test
  Fix CMake policy 54 warnings
  TRILABS-105 Fix CMake policy 54 warnings
2019-01-18 21:49:05 -06:00
Allen Byrne
769837f3ae Add parrallel runTest.cmake for ph5example 2019-01-18 16:30:36 -06:00
Allen Byrne
ab2ab38fa6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'eeea2b91729b57a0cdec301312bd5713941ab2c6':
  Fix typo
2019-01-18 13:33:00 -06:00
Allen Byrne
eeea2b9172 Merge pull request #1484 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit '2cf543b2941442a45a4cb878d4fb33c8c69188a2':
  Fix typo
2019-01-18 13:32:18 -06:00
Allen Byrne
f5a194ce58 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'c5b19f3dd2eb4144e614105e30bf149b5324e014':
  Fix missing depends for last repart test
2019-01-18 12:57:42 -06:00
Allen Byrne
2cf543b294 Fix typo 2019-01-18 12:57:15 -06:00
Allen Byrne
c5b19f3dd2 Merge pull request #1483 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit '13d1568c3f491b1dfe6254f22f04fece29b6dad2':
  Fix missing depends for last repart test
2019-01-18 12:53:49 -06:00
Allen Byrne
13d1568c3f Fix missing depends for last repart test 2019-01-18 12:27:21 -06:00
Allen Byrne
a578e36038 Add missing depends to last test 2019-01-18 12:25:38 -06:00
Allen Byrne
8adbf2552b Fix CMake policy 54 warnings 2019-01-18 12:16:38 -06:00
Allen Byrne
f25e78ad42 TRILABS-105 Fix CMake policy 54 warnings 2019-01-18 11:55:16 -06:00