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Commit Graph

16527 Commits

Author SHA1 Message Date
lrknox
12425a62a6 set initial version for HDF5 1.10.1. 2017-03-17 12:43:50 -05:00
Allen Byrne
2d22e8af0b Merge pull request in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4c6f538770f92a09c6be46e44de056ad7ec68426':
  Add toolset option to cmake configure
  Update cmake pubconf to match autotools and add strtoll checks
2017-03-17 12:21:36 -05:00
Binh-Minh Ribler
50ac3cd6ec Description:
Miscellaneous clean-up: format and comments
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2017-03-17 11:03:18 -05:00
Allen Byrne
4c6f538770 Add toolset option to cmake configure 2017-03-17 10:36:49 -05:00
mainzer
b7c58f7dfc Minor code changes to address comments in pull request 2017-03-17 04:36:05 -05:00
Binh-Minh Ribler
f7711df680 Merge pull request in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp2:develop to develop
* commit '98090fe3b08a0ff85ae9bc93218a14017a6f37fe':
  Purpose: Add new C++ wrappers Description:     Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist,     H5Oopen, H5Oclose and H5Pset_virtual
2017-03-16 18:19:32 -05:00
Allen Byrne
24b11709af Update cmake pubconf to match autotools and add strtoll checks 2017-03-16 12:59:20 -05:00
mainzer
9764970d26 Update required for checkin.
Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~mainzer/hdf5_jrm into develop
2017-03-16 12:54:14 -05:00
mainzer
11ce930ae9 Checkin of additions to cache image parallel test code and
associated bug fixes.

Also, modifications to H5PB_dest() to flush the page buffer before
destroying the page buffer.  This is necessary, as when persistant
free space managers are enabled, the page buffer will typically contain
dirty FSM data at page buffer destroy time.

Tested serial/debug, serial/production, serial/check-vfd/debug,
       parallel/debug, parallel/production on Jelly.
2017-03-16 12:42:10 -05:00
Allen Byrne
368089572a Merge pull request in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f21374c455b713df8e866d0ebfddece7874b0f47':
  HDFFV-10138 Merge app framework to examples
2017-03-16 11:28:45 -05:00
Allen Byrne
f21374c455 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '887783eb0e9a1787c77092ed53a7737ad4aaac3a':
  Switch from HDatoll to HDstrtoll, for Windows compatibility.
2017-03-16 11:28:11 -05:00
Quincey Koziol
887783eb0e Merge pull request in HDFFV/hdf5 from merge_page_buffering_10 to develop
* commit 'a16d142f80630b11ac45c0bcf00ee2ea5b88f08e':
  Switch from HDatoll to HDstrtoll, for Windows compatibility.
2017-03-16 11:13:57 -05:00
Allen Byrne
b2bd7883c3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'cee9624b0febcb60a7b2699262104e9eaf20313d':
  output_filter.sh:         Comment added to address HDFFV-8270.  The sample ontput in the         file's comments are not up-to-date with the scripts in the file         that remove output unique to certain systems when running test         scripts.  This output doesn't match expected output files for         the tests, causing them to fail.  Ther output_filter.sh file         removes such output.  Currently we don't have access to these         systems to update the comments.
  Correct double sourcedir name on copied datafiles.
2017-03-16 10:45:59 -05:00
Quincey Koziol
a16d142f80 Switch from HDatoll to HDstrtoll, for Windows compatibility. 2017-03-16 08:38:24 -07:00
Larry Knox
cee9624b0f Merge pull request in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '98567db19290dc07cc86efae720b0dc457ae9f65':
  output_filter.sh:         Comment added to address HDFFV-8270.  The sample ontput in the         file's comments are not up-to-date with the scripts in the file         that remove output unique to certain systems when running test         scripts.  This output doesn't match expected output files for         the tests, causing them to fail.  Ther output_filter.sh file         removes such output.  Currently we don't have access to these         systems to update the comments.
2017-03-15 22:21:07 -05:00
lrknox
98567db192 output_filter.sh:
Comment added to address HDFFV-8270.  The sample ontput in the
        file's comments are not up-to-date with the scripts in the file
        that remove output unique to certain systems when running test
        scripts.  This output doesn't match expected output files for
        the tests, causing them to fail.  Ther output_filter.sh file
        removes such output.  Currently we don't have access to these
        systems to update the comments.

testflushrefresh.sh.in:
        flushrefresh and other SWMR tests have been failing
        occasionally but regularly since bringing them to the develop
        branch.  The logs and debugging point to unexpected deletion of
        signal files as the point of failure, and John Mainzer suggests
        that two such tests running simultaneously in the same directory
        may lead to the operating system deleting the other test's
        signal file. Running the flushrefresh test in its own directory
        seems to solve the problem.
2017-03-15 12:49:19 -05:00
Quincey Koziol
bf69edf565 Merge pull request in HDFFV/hdf5 from merge_page_buffering_09 to develop
* commit 'ecfdadfb1eff5ae8f18269e33dce3856e22f4bd7':
  Correct double sourcedir name on copied datafiles.
2017-03-14 23:28:41 -05:00
Quincey Koziol
ecfdadfb1e Correct double sourcedir name on copied datafiles. 2017-03-14 20:58:21 -07:00
Allen Byrne
3fcfb36748 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'd0aeefd6455d6877afd934e238362636a86e4b42':
  Final merge of page buffering branch to develop
2017-03-14 14:31:10 -05:00
Quincey Koziol
d0aeefd645 Merge pull request in HDFFV/hdf5 from merge_page_buffering_08 to develop
* commit '0313cbb91d974b153dbe8747d193ac3c619eea3b':
  Final merge of page buffering branch to develop
2017-03-14 12:23:34 -05:00
Allen Byrne
2687321987 HDFFV-10138 Merge app framework to examples 2017-03-14 12:14:44 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Binh-Minh Ribler
98090fe3b0 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp2 into develop 2017-03-13 22:55:32 -05:00
Binh-Minh Ribler
a48c9c4024 Purpose: Add new C++ wrappers
Description:
    Added wrappers for H5Iis_valid, H5Ps/get_nlinks, H5Tget_create_plist,
    H5Oopen, H5Oclose and H5Pset_virtual

        // Checks if the given ID is valid.
        static bool isValid(hid_t an_id);

        // Sets the number of soft or user-defined links that can be
        // traversed before a failure occurs.
        void setNumLinks(size_t nlinks) const;

        // Gets the number of soft or user-defined link traversals allowed
        size_t getNumLinks() const;

        // Returns a copy of the creation property list of a datatype.
        PropList getCreatePlist() const;

        // Opens an object within a group or a file, i.e., root group.
        hid_t getObjId(const char* name,...);
        hid_t getObjId(const H5std_string& name,...);

        // Closes an object opened by getObjId().
        void closeObjId(hid_t obj_id) const;

        // Maps elements of a virtual dataset to elements of the source dataset.
        void setVirtual(const DataSpace& vspace, const char *src_fname,...);
        void setVirtual(const DataSpace& vspace, const H5std_string src_fname,...);

Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2017-03-13 22:53:43 -05:00
Quincey Koziol
847d675f27 Merge pull request in HDFFV/hdf5 from merge_page_buffering_07 to develop
* commit '4fad103187db9095afc8eab90b5f5544feb1d19b':
  Bring changes to I/O parameters from page_buffering branch.
  Merge in reentrency changes to "make space in cache" from page_buffering branch.
  Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from a cache image.
  Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the page_buffering branch yet.  Also, bring over improvements to flush candidate entries for parallel code.
  Align with incoming page buffering changes: minor cleanups, centralize removing entries from collective metadata read list
2017-03-13 14:04:33 -05:00
Quincey Koziol
4fad103187 Bring changes to I/O parameters from page_buffering branch. 2017-03-13 08:21:28 -07:00
Quincey Koziol
0b78740ff4 Merge in reentrency changes to "make space in cache" from page_buffering branch. 2017-03-13 07:45:42 -07:00
Quincey Koziol
c4a36e0bb3 Minor cleanups and bring over "prefetched dirty" fixes for entries loaded from
a cache image.
2017-03-12 01:57:19 -08:00
Quincey Koziol
36f06cab79 Remove some usage of "prefetched_dirty" flag (which hasn't been merged from the
page_buffering branch yet.  Also, bring over improvements to flush candidate
entries for parallel code.
2017-03-09 21:38:26 -08:00
Quincey Koziol
d0226dffb2 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_page_buffering_07 2017-03-09 20:41:07 -08:00
Scot Breitenfeld
56e5b4ed05 Merge pull request in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'd297ee6e82adbbbbca168997953cdf0c5a3922eb':
  updated AM_SILENT_RULES syntax
  Added a check for AM_SILENT_RULES before enabling it.
2017-03-09 09:56:39 -06:00
M. Scot Breitenfeld
d297ee6e82 updated AM_SILENT_RULES syntax 2017-03-09 09:54:19 -06:00
M. Scot Breitenfeld
ed37cbfd2e Added a check for AM_SILENT_RULES before enabling it. 2017-03-08 16:21:24 -06:00
Allen Byrne
2a0cacb015 Merge pull request in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '71fa3dc480d9d6b1ea00c4f10e9ee0ec10c2c8d9':
  Fix alignment
  Fix vds tests
2017-03-08 11:51:50 -06:00
Allen Byrne
71fa3dc480 Fix alignment 2017-03-08 11:51:17 -06:00
Allen Byrne
527d1a185e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '7942414b24288d497d4878754319dffa24bbec11':
  Description:     Only format changes: mostly tabs vs. spaces Platforms tested:     Linux/64 (jelly) - very minor
2017-03-08 08:34:42 -06:00
Quincey Koziol
0afab7474b Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_page_buffering_07 2017-03-07 15:54:05 -08:00
Binh-Minh Ribler
7942414b24 Merge pull request in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp:develop to develop
Replaces tabs with spaces.

* commit '8f5a1f43d0cf527488be2b2805bac2b6c86b8c66':
  Description:     Only format changes: mostly tabs vs. spaces Platforms tested:     Linux/64 (jelly) - very minor
2017-03-07 16:05:53 -06:00
Quincey Koziol
7f95d847e6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_page_buffering_07 2017-03-07 13:56:41 -08:00
Quincey Koziol
cc75f67514 Align with incoming page buffering changes: minor cleanups, centralize removing
entries from collective metadata read list
2017-03-07 12:50:41 -08:00
Allen Byrne
12b87f0f84 Fix vds tests
java wrong call
vds test - missing checks and if content
2017-03-07 10:06:38 -06:00
Allen Byrne
1a1bdc1219 Merge pull request in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'cceddc6b4f002fe98470f9f6af5dbf9f6461c95a':
  Correct result code for strings test
  Add extension to filename
  HDFFV-10128 fix string compare and add tests
  Lowercase math and set CMake commands
2017-03-06 13:17:44 -06:00
Allen Byrne
cceddc6b4f Correct result code for strings test 2017-03-03 15:26:06 -06:00
Allen Byrne
eebe786cca Add extension to filename 2017-03-03 15:10:40 -06:00
Allen Byrne
9e75847d67 HDFFV-10128 fix string compare and add tests 2017-03-03 14:47:59 -06:00
Binh-Minh Ribler
8f5a1f43d0 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp into develop 2017-03-03 08:50:04 -06:00
Binh-Minh Ribler
861a849530 Description:
Only format changes: mostly tabs vs. spaces
Platforms tested:
    Linux/64 (jelly) - very minor
2017-03-03 08:45:57 -06:00
Allen Byrne
713f0f3721 Lowercase math and set CMake commands 2017-03-02 12:20:26 -06:00
Allen Byrne
0df90f9f79 Merge pull request in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'f4dd30f41ccee7bcd97fba065573c5201cbcc743':
  Update CMake formatting
  Update CMake files and formatting
  HDFFV-10120 verify nozlib checking with tools tests
  cmake non-code typo
2017-03-02 12:11:19 -06:00
Quincey Koziol
a04bf9bf7f Merge pull request in HDFFV/hdf5 from merge_page_buffering_07 to develop
* commit '5df52404bc6f6323ebf064b3d82b8e683de96eba':
  Misc. small cleanups to sync against incoming page buffering changes.
2017-03-02 11:25:40 -06:00