Commit Graph

16634 Commits

Author SHA1 Message Date
Larry Knox
3b81a29c46 Merge pull request #482 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'be49a9422654ac9eec07ffe3599b4a7f7561cdb6':
  Comment out install-exec-hooks to remove libdynlib* files.  Allen did the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably work.  In the develop branch they are causing make install failures because the autotools' install commands sometimes attempt to chmod these files when they no longer exist.
2017-05-01 22:08:00 -05:00
Dana Robinson
734aebc395 Rework of the POSIX file open permissions and macros to clean up
HDopen() calls.

Also fixed a minor const warning in the core VFD.
2017-04-28 18:13:22 -04:00
lrknox
be49a94226 Comment out install-exec-hooks to remove libdynlib* files. Allen did
the same for hdf5_1_10 and hdf5_1_10_1 because the hooks don't reliably
work.  In the develop branch they are causing make install failures
because the autotools' install commands sometimes attempt to chmod these
files when they no longer exist.
2017-04-28 16:37:22 -05:00
Larry Knox
fc4e8ea5ec Merge pull request #481 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0bf41bec5aab468036f32afb287f224d266edf7a':
  Add extra files to be copied
2017-04-28 10:45:05 -05:00
Dana Robinson
d3b664b6a7 Changed the Windows POSIX open() file permissions to be correct
according to MSDN. Partial fix for HDFFV-9630.
2017-04-28 08:11:29 -07:00
Allen Byrne
0bf41bec5a Add extra files to be copied 2017-04-27 16:32:51 -05:00
Dana Robinson
09882f7ccd Merge pull request #480 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_header_create to develop
* commit '80d57c242a15edd983673e9bad4e966c72975289':
  Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
2017-04-27 15:07:57 -05:00
Dana Robinson
80d57c242a Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed
the option from the CMake cache init files.

Fixes HDFFV-10184
2017-04-27 15:18:18 -04:00
Larry Knox
c2729b6ad1 Merge pull request #478 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'a302f508a51ba9fe109aaacda24601d5c458fe8d':
  Change position of declaration to top of block
2017-04-27 08:55:41 -05:00
Allen Byrne
a302f508a5 Change position of declaration to top of block 2017-04-27 08:52:34 -05:00
Vailin Choi
2d535d8c88 Merge pull request #473 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'bacb45b38ae8513024baf2dfe08c8918625489e2':
  Modifications based on pull request review. Made couple changes based on the review comments.
  Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-26 14:04:24 -05:00
Vailin Choi
bacb45b38a Modifications based on pull request review.
Made couple changes based on the review comments.
2017-04-26 14:00:34 -05:00
Vailin Choi
cb8e82a53d Incorporate patch from GE Healthcare (HDFFV-9934)
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
2017-04-25 18:08:53 -05:00
Allen Byrne
9c30b39316 Merge pull request #470 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '2420df5a85c64a20d98165c5b8c891899b31da83':
  HDFFV-10170 revert entire change
2017-04-25 16:54:02 -05:00
Allen Byrne
2420df5a85 HDFFV-10170 revert entire change 2017-04-25 16:34:52 -05:00
Larry Knox
4d1d2b4eda Merge pull request #468 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '89fbe00dec8187305b518d91c3ddb7d910665f79':
  Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
2017-04-25 16:09:10 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
lrknox
1073ac45ef Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. 2017-04-25 15:59:21 -05:00
Dana Robinson
e8a0726636 Merge pull request #464 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:bin_trace_complain to develop
* commit 'b1a5ba405393da68028cf1c8b159a3abb51d2187':
  Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
2017-04-25 12:52:41 -05:00
Dana Robinson
b1a5ba4053 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 02:09:55 -04:00
Allen Byrne
9d84abe503 Merge pull request #457 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0fb5ce7ad50664f800ffe7e107e0fb0f90f66e12':
  Correct name of native function
  Fix javadoc
  Fix typo
  Signature change requires a ptr
  Change     H5PLsize() signature
  Revert HDFFV-9655
  Changed signature of H5PLgetsize
  Revert HDFFV-9655 by disabling test and not using new function.
  Fix path to actual executable location
  Windows ahs one more directory level
2017-04-24 16:44:35 -05:00
Allen Byrne
0fb5ce7ad5 Correct name of native function 2017-04-24 16:21:42 -05:00
Allen Byrne
c148ad90f0 Fix javadoc 2017-04-24 16:09:39 -05:00
Allen Byrne
bce204f7f3 Fix typo 2017-04-24 15:36:10 -05:00
Allen Byrne
c08ef4dc5b Signature change requires a ptr 2017-04-24 15:34:25 -05:00
Allen Byrne
c1dc24c143 Change H5PLsize() signature 2017-04-24 15:31:28 -05:00
Allen Byrne
c2a9c33444 Revert HDFFV-9655 2017-04-24 15:25:36 -05:00
Allen Byrne
aafee79e9f Changed signature of H5PLgetsize 2017-04-24 15:20:21 -05:00
Allen Byrne
6fac0de158 Revert HDFFV-9655 by disabling test and not using new function. 2017-04-24 15:10:58 -05:00
Allen Byrne
d9a69c592f Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2deb953dbbde17712723529c4bca6a2bf3eedf6b':
  Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
2017-04-24 15:09:52 -05:00
Vailin Choi
2deb953dbb Merge pull request #453 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'e9b289a3d1d031f594e8c5421144ac44f3d44bcb':
  Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
2017-04-24 14:48:48 -05:00
Allen Byrne
220388e735 Fix path to actual executable location 2017-04-24 10:50:06 -05:00
Allen Byrne
0e1633c26d Windows ahs one more directory level 2017-04-24 09:03:46 -05:00
Larry Knox
0ee3d2ad9b Merge pull request #454 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'ebb7bc7fadb86c48869439ea9137f1dfc1e1f158':
  Comment out failing plugin test until fixed (unexpected .libs in plugin test directory path with '@').
2017-04-22 15:45:48 -05:00
lrknox
ebb7bc7fad Comment out failing plugin test until fixed (unexpected .libs in plugin test directory path with '@'). 2017-04-22 15:21:36 -05:00
Vailin Choi
e9b289a3d1 Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files
(1) Re-structure tests to do one "extend" action at a time
(2) Re-try test till max limit before final failure
2017-04-21 18:42:17 -05:00
Larry Knox
3750e8ac7c Merge pull request #449 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '7bd516f2ead21e8470cc25c0b664ad6b56c723a0':
  Our best effort to build dynamic plugin tests and not install them with "make install".  It seems the install-exec-hook doesn't remove the last to be installed.
  Add targets for plugin test libraries to avoid linking to external libs.
2017-04-21 15:32:13 -05:00
Allen Byrne
e2bf6e2beb Merge pull request #447 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-9655-plugin-path-relative to develop
* commit 'a995a63085d88e1a633770536efeff5b01569445':
  HDFFV-9655 fix test and some warnings
  HDFFV-9655 fix compile and test
  HDFFV-9655 - Add functions for '@' - untested
2017-04-21 14:40:37 -05:00
Allen Byrne
1f2a08041b Merge pull request #452 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'abdb412d50bcdfc158e6efddc9eb4aba4f8bce1e':
  file already in list
  Fix parameter form
2017-04-21 14:36:09 -05:00
lrknox
7bd516f2ea Our best effort to build dynamic plugin tests and not install them with
"make install".  It seems the install-exec-hook doesn't remove the last
to be installed.
2017-04-21 14:32:45 -05:00
Dana Robinson
0afef681c5 Merge pull request #451 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'b96db2f074c69d95f66917822ffb359a8e401cc7':
  Fixed problems that prevent bin/trace from marking up some functions.
2017-04-21 11:13:41 -05:00
Allen Byrne
abdb412d50 file already in list 2017-04-21 11:04:27 -05:00
Allen Byrne
a995a63085 HDFFV-9655 fix test and some warnings 2017-04-21 10:58:32 -05:00
Allen Byrne
aeb1500897 Merge remote-tracking branch 'origin/develop' into
bugfix/HDFFV-9655-plugin-path-relative
2017-04-21 10:41:50 -05:00
Allen Byrne
3968c5c3bf Fix parameter form 2017-04-21 10:07:30 -05:00
Allen Byrne
ae1144f882 HDFFV-9655 fix compile and test 2017-04-21 10:02:43 -05:00
Dana Robinson
b96db2f074 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop 2017-04-20 20:20:03 -04:00
Dana Robinson
739f413b78 Fixed problems that prevent bin/trace from marking up some functions. 2017-04-20 20:19:15 -04:00
lrknox
6ef69b7b17 Add targets for plugin test libraries to avoid linking to external libs. 2017-04-20 16:51:21 -05:00
Allen Byrne
4a70b0d7dc Merge pull request #448 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9a7b106d3776a8454b5cb9443f11aae2873cc617':
  Correct test options to match autotools script
  Updates to CMake for the changes in the autotools script
2017-04-20 15:49:20 -05:00