Commit Graph

185 Commits

Author SHA1 Message Date
James Laird
59ec5b3d66 [svn-r10517] Purpose:
Bug fix

Description:
On some machines, $RUNSERIAL variable needs to be used to run
tests.  Set $RUNTESTS (which is used for non-parallel tests) to
be $RUNSERIAL in configure.am.

Also, since I was updating all Makefiles.in anyway, I updated
commence.am to point to autotools installs in AFS instead of
those on heping.

Platforms tested:
mir, sleipnir, modi4, copper
2005-03-31 13:26:17 -05:00
James Laird
14e06e81cb [svn-r10511]
Purpose:
"Bug fix"

Description:
Hardcoded Makefiles to use /bin/sh instead of letting configure
detect shell automatically.  This is what v1.6 does, and avoids
problems on janus.

Platforms tested:
sleipnir, copper, modi4, mir
2005-03-30 16:14:48 -05:00
James Laird
7acf3f1b12 [svn-r10475] Purpose:
Feature - conditional compilation

Description:
SRB file driver and tests are now compiled only when SRB is enabled
(using --with-srb during configure).

Solution:
Added an automake conditional in configure.in, altered Makefiles.am in
src and test directories to depend on that conditional.
This should make a nice example for posterity to add conditionally
compiled sources.

Platforms tested:
heping (only configure change)
2005-03-29 12:38:17 -05:00
James Laird
9452992c09 [svn-r10459]
Purpose:
Added C++ wrapper for Packet Table API.

Description:
Added macro for high-level C++ library (LIBH5CPP_HL), which changes every
Makefile.in.
Added directories for high-level C++ library (though currently only Packet
Table API is supported).
Added both C++ source and tests.

Platforms tested:
sleipnir, mir, modi4

Misc. update:
2005-03-28 11:32:20 -05:00
James Laird
25df1908bc [svn-r10158] Purpose:
Automake version upgrade

Description:
Upgraded automake version from 1.6.2 to 1.9.5.
Changed bin/reconfigure script to use automake 1.9.5.
Changed configure.in and Makefiles to use new FCFLAGS and FC variables
instead of FFLAGS and F9X.
Automake and configure should now do the lion's share of the work
supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will
be cleaned later).
Altered how configure handles pmake; now root-level Makefile.in is
processed by bin/reconfigure to have a .MAKEFLAGS target, since
automake no longer allows us to define unused variables.
Configure now always checks for C++ compiler even if it is not
used, since automake thinks this is the Right Thing To Do and
will break otherwise.

Platforms tested:
Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
2005-03-07 12:57:27 -05:00
Albert Cheng
0d514907a9 [svn-r10123] Purpose:
Removed GASS configuration and software packages associated with
it.  The following software are no longer configurable.

checking for main in -lcrypto... yes
checking for SSL_get_version in -lssl... yes
checking globus_common.h usability... yes
checking globus_common.h presence... yes
checking for globus_common.h... yes
checking for globus_module_activate in -lglobus_common... yes
checking for main in -lglobus_gass_cache... yes
checking for main in -lglobus_gaa... yes
checking for main in -lglobus_gss... yes
checking for main in -lglobus_gss_assist... yes
checking for main in -lglobus_io... yes
checking for main in -lglobus_gass_transfer_assist... yes
checking for main in -lglobus_gass_transfer... yes
checking for globus_gass_open in -lglobus_gass_file... yes

Platforms tested:
h5committested (but copper was down.) tested in modi4 too.
2005-03-02 15:02:55 -05:00
James Laird
0b83fea125 [svn-r10066] Purpose:
Libtool upgrade

Description:
HDF5 was using libtool 1.4.2.  Upgraded to libtool 1.5.14.

Platforms tested:
verbena, heping, pommier, copper, modi4, arabica
2005-02-23 11:47:00 -05:00
Xiaowen Wu
065fe7bb71 [svn-r10023] Purpose:
New feature.

Description:
    Add the scaleoffset internal library filter.

Solution:

Platforms tested:
    heping, copper, arabica

Misc. update:
2005-02-16 21:52:21 -05:00
James Laird
8ed95c0011 [svn-r10016]
Purpose:
Bug fix

Description:
modi4 dies during build with strange errors.
The root cause of these is a two-year-old hack in HDF5's libtool
script that only takes effect on IRIX.

Solution:
Edited the libtool hack (by editing ltmain.sh) to correct a bug in
the hack.
Also made sure that compiler-specific DEFAULT_LIBS are used
when linking.

Platforms tested:
sleipnir, copper, modi4, sol
2005-02-16 14:27:27 -05:00
James Laird
b96f342722 [svn-r9993] Purpose:
Bug fix

Description:
Arabica exhibited strange errors when linker found wrong versions of
header files.  This happened because include directories were
given to linker in the wrong order.

Solution:
Move include directories from AM_CFLAGS variable to INCLUDES
variable to put them before CPPFLAGS variable.  Trust me, it works.
This bug may also have contributed to strange errors on other platforms
(kelgia?).

Platforms tested:
copper, sleipnir, arabica.
	(h5dump broke while building on arabica, but this happened in
	a clean checkout, too).
2005-02-11 16:32:22 -05:00
James Laird
3f0a35a4ea [svn-r9988] Purpose:
Bug fix

Description:
pmake (on modi4, for instance) complains about undefined variables
if it is run without the -V flag, which turns those errors to warnings.

Solution:
Added test to configure.in to see if $MAKE will allow Makefiles
with undefined variables.  If not, sets -V flag in AM_MAKEFLAGS.
Ensured that all custom make targets use AM_MAKEFLAGS.
Also defined all variables that caused errors in top-level Makefile.am.
This means that pmake can be used to build hdf5 *from the top level
only*.  To run make from a subdirectory, still need to use -V flag
(or use make or gmake).

Platforms tested:
modi4, heping, copper, sleipnir
2005-02-11 12:40:52 -05:00
James Laird
db2575baa9 [svn-r9930]
Purpose:
Bug fix

Description:
Parallel builds were breaking in tools/lib

Solution:
talign didn't realize it depended on libh5tools.la because its
dependencies listed the full path (../../tools/lib/libh5tools.la).
Changed this, and made similar changes in a couple of other
directories.
This checkin should also add the --foreign flag to every Makefile.in

Platforms tested:
sleipnir (minor change)
2005-02-03 16:59:40 -05:00
Quincey Koziol
0b332ace5e [svn-r9928] Purpose:
New feature

Description:
    Add basic code for new B-tree implementation.  They don't do much yet,
aren't hooked up to anything yet and the format may change, but I'd like to
start getting them into the daily tests.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/parallel
    Too minor to require h5committest
2005-02-03 14:59:05 -05:00
James Laird
ab243bf369 [svn-r9920] Purpose:
Bug fix

Description:
Found the permanant fix to automake/CVS dependency problem

Solution:
Added AM_MAINTAINER_MODE macro to configure.in.
Now automake will never try to regenerate Makefiles, Makefiles.in,
configure, H5config.h, etc. when they are out of date, nor will it
print any warnings.
Developers should  be very very careful to use reconfigure script,
and can add --enable-maintainer-mode flag to configure on heping
to regenerate these files correctly.

Platforms tested:
heping sleipnir copper
2005-02-02 15:59:46 -05:00
James Laird
ed8685acd2 [svn-r9915] Purpose:
Bug fix

Description:
Configuration files' timestamps were incorrect.

Solution:
Update Makefiles.in.  Also added correct paths to autotools on heping,
so heping build should be able to re-generate configuration files even
if they are still broken.

Platforms tested:
sleipnir
2005-02-02 11:00:36 -05:00
James Laird
e3dacb31be [svn-r9912] Purpose:
Bug fix

Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.

Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.

Platforms tested:
sleipnir (No changes to Makefile content)
2005-02-01 16:05:33 -05:00
James Laird
30bfb1e0ea [svn-r9907] Purpose:
Bug fix

Description:
Different compilers use different flags to include Fortran module files

Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.

Platforms tested:
sleipnir, sol, copper
2005-02-01 10:27:37 -05:00
James Laird
26303241fe [svn-r9902] Purpose:
Configuration feature

Description:
HDF5 now uses automake to generate Makefiles

Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh

Platforms tested:
Many
2005-01-31 22:17:02 -05:00
Leon Arber
046fe35568 [svn-r9876] Purpose:
Added ability to select which io performance types to graph

Description:
Originally, POSIX, MPIO, and PHDF5 were all graphed.  Now, any subset of these can be graphed individually via the io_type command-line param.

Platforms tested:
heping

Misc. update:
2005-01-27 16:59:34 -05:00
Leon Arber
3cb812ae8a [svn-r9871] Purpose:
Feature additions:
    script has support for all sorts of interesting plots.
    fix axis scaling

Description:
Added support for 2-d and 3-d plots of the data.  Command-line options are also added to customize these plots.
Axis tick labels are now much improved and match the data and are logically spaced.

Platforms tested:
heping (gnuplot must be installed to do the plots)

Misc. update:
2005-01-26 15:04:56 -05:00
Albert Cheng
0fbfc1f7ed [svn-r9867] Purpose:
Bug fixes (provided by Leon Arber).

Description:
gen_report spewed many messages and could not report speeds that are
less than 100MB/s.

Solution:
Removed -w which prints warning messages.
Fixed code to recognize speeds under 100MB/s.

Platforms tested:
Eirene.
2005-01-24 15:02:52 -05:00
Xuan Bai
ea2dd2a44a [svn-r9844] Purpose:
Bug fix.

Description:
Function _flushall() is not available on Cygwin.  So a Cgywin macro is added so the compiler will not call this function when building HDF5 on Cygwin.

Solution:
Change the following codes:

#ifdef H5_HAVE_SYSTEM
#ifdefined WIN32
	_flushall();
#else
    HDsystem ("sync");
    HDsystem ("df >/dev/null");
#endif

to:

#ifdef H5_HAVE_SYSTEM
#if defined(WIN32) && ! defined(__CYGWIN__)
	_flushall();
#else
    HDsystem ("sync");
    HDsystem ("df >/dev/null");
#endif



Platforms tested:
Cygwin 1.5.11, VC 6.0 on XP.
Linux 2.4 (heping)
Solaris 2.7 (arabica)

Misc. update:
2005-01-20 15:46:33 -05:00
Quincey Koziol
76ba1a99d3 [svn-r9805] Purpose:
Code cleanup

Description:
    Remove obsolete support for Watcom C compiler.

Platforms tested:
    None - too minor to require any.
2005-01-11 10:43:13 -05:00
Quincey Koziol
427ff7da28 [svn-r9727] Purpose:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)

Description:
    Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation.  So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.

    I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
    FreeBSD 4.10 (sleipnir) w/threadsafe
    FreeBSD 4.10 (sleipnir) w/backward compatibility
    Solaris 2.7 (arabica) w/"purify options"
    Solaris 2.8 (sol) w/FORTRAN & C++
    AIX 5.x (copper) w/parallel & FORTRAN
    IRIX64 6.5 (modi4) w/FORTRAN
    Linux 2.4 (heping) w/FORTRAN & C++


Misc. update:
2004-12-29 09:26:20 -05:00
Raymond Lu
cb7f03a26f [svn-r9183] Purpose: New feature
Description:  Restore 6 old error API functions back to the library to be backward
compatible with v1.6.  They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto.  These functions do not have error stack  as parameter.

Solution:  Internally, these functions use default error stack.

Platforms tested:  h5committest and fuss.

Misc. update: RELEASE.txt
2004-09-01 12:43:30 -05:00
Quincey Koziol
084ed88137 [svn-r8983] Purpose:
Update dependencies

Description:
    Update dependencies after config/depend1.in bugfix

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    IRIX64 6.5 (modi4)
    h5committested
2004-08-02 09:06:07 -05:00
James Laird
eab58732d8 [svn-r8781]
Purpose:
HDF5 now supports SZIP with no encoder.

Description:
SZIP can be configured to have both encoder and decoder or just to have the decoder.  HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled.

Solution:
Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id.  See SZIP RFC.

Platforms tested:
Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++)

Misc. update:
2004-07-01 12:38:04 -05:00
Quincey Koziol
6fc0bffac6 [svn-r8732] Purpose:
Code cleanup

Description:
    Reduce compiler warnings on SGI IRIX

Platforms tested:
    FreeBSD 4.10 (sleipnir)
    SGI IRIX6 (Cheryl's machine)
    Too minor to require full h5committest
2004-06-23 12:56:57 -05:00
Quincey Koziol
4d3188e588 [svn-r8618] Purpose:
Fix makefiles, dependencies & manifest after source file rename.
2004-06-05 14:32:31 -05:00
Quincey Koziol
583bdf994c [svn-r8495] Purpose:
Bug fixes

Description:
    Updated dependencies

    Fixed error with C++ compiler builds of main library

    Added H5Pset_data_transform to MPE info

Platforms tested:
    FreeBSD 4.9 (sleipnir)
2004-05-08 09:48:42 -05:00
Quincey Koziol
2d8964517b [svn-r8128] Purpose:
Update dependencies after restructuring of MPI stuff
2004-01-30 21:32:19 -05:00
Albert Cheng
aaff647518 [svn-r7914] Purpose:
Regenerate the Dependencies files if needed.

Description:

Solution:

Platforms tested:

Misc. update:
2003-12-05 10:39:53 -05:00
Quincey Koziol
8dbb0315c5 [svn-r7884] Purpose:
Small bug fix

Description:
    MPI_DOUBLE_PRECISION -> MPI_DOUBLE in C code.

Platforms tested:
    Cray T3E (hubble)
    Too minor to require h5committest
2003-11-25 15:51:27 -05:00
Raymond Lu
0721b0c992 [svn-r7644] Purpose: Modify a performance test.
Description:  changed some features


Platforms tested: RH 8 and modi4.  Some simple feature changes.
2003-10-15 17:02:16 -05:00
Raymond Lu
a1aa262020 [svn-r7629] Purpose: add a new performance program
Description: This program test performance of create or open datasets and create
             attributes for datasets.


Platforms tested: h5committest

Misc. update: MANIFEST
2003-10-14 17:04:03 -05:00
Quincey Koziol
e2518919c9 [svn-r7626] Purpose:
Update dependencies and tracing information

Platforms tested:
    Linux 2.4 (verbena) w/FORTRAN
    too minor for h5committest
2003-10-14 10:46:38 -05:00
Quincey Koziol
c58d85f10e [svn-r7527] Purpose:
Code cleanup

Description:
    Clean up a few loose ends and warnings for the 1.6 compatibility changes
to the error API.

Platforms tested:
    FreeBSD 4.9 (sleipnir)
    too minor to require h5committest
2003-09-30 11:20:46 -05:00
Raymond Lu
7e79a8d71e [svn-r7507] *** empty log message *** 2003-09-24 14:26:50 -05:00
Quincey Koziol
4bc1eccf9a [svn-r7439] Purpose:
Code cleanup

Description:
    Clear up a couple of minor issues with compiling the library with a C++
compiler.

Platforms tested:
    FreeBSD 4.9 (sleipnir)
    Too minor to require h5committest
2003-09-03 11:45:48 -05:00
Albert Cheng
374ad0ef30 [svn-r7361] Description:
Updated the copyright notice--mostly by rearranging
some text to make them consistent.

Solution:

Platforms tested:
"h5committested"--sol is down, so, no SUn test.

Misc. update:
2003-08-13 23:58:29 -05:00
Quincey Koziol
7f119036d3 [svn-r7352] Purpose:
Updated dependencies

Platforms tested:
    h5committested
2003-08-12 20:50:11 -05:00
Bill Wendling
e7bcad6e7b [svn-r7274] *** empty log message *** 2003-07-29 14:24:10 -05:00
Raymond Lu
0d22a663df [svn-r7265] *** empty log message *** 2003-07-25 21:55:47 -05:00
Quincey Koziol
4e23c80758 [svn-r7181] Purpose:
Version update

Description:
    Removed 1.4 compatibility code in the library.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    h5committest
2003-07-07 14:02:46 -05:00
Albert Cheng
732bb9f065 [svn-r7128] Purpose:
feature change, new feature.

Description:
Had the HDF5_PARAPREFIX default set to /tmp.
Changed it to null so that data files are created in current directory
by default.
Also added a code to print data filename used when debug level > 0.

Platforms tested:
Tested in modi4 parallel.

Misc. update:
2003-06-30 18:38:36 -05:00
Quincey Koziol
600a171546 [svn-r7091] Purpose:
Code cleanup

Description:
    Remove the fill-value option entirely, since the 1.5.x library's default
behavior is now the same as the 1.4.x behavior and also there is no
corresponding code for implementing fill-values with the POSIX or MPI-I/O tests.

Platforms tested:
    FreeBSD 4.8 (sleipnir) w/parallel
    too small to need h5committest
2003-06-24 10:37:24 -05:00
Quincey Koziol
4fc73028ed [svn-r7060] Purpose:
Code cleanup

Description:
    Change some variables that are keywords in C++ to non-keywords.

Platforms tested:
    FreeBSD 4.8 (sleipnir)
    too minor to require full h5committest
2003-06-18 15:54:19 -05:00
Albert Cheng
ce57ff9668 [svn-r7033] Purpose:
minor improvment

Description:
corrected an omission in the usage help output.
Added more parameters checks.

Solution:

Platforms tested:
Only in modi4.

Misc. update:
2003-06-13 01:57:34 -05:00
Bill Wendling
09da63a8b9 [svn-r7026] Purpose:
Bug Fix

Description:
    On HP-UX platforms, the "open()" function needs to specify that the
    file being created has permissions S_IRWXU, which means that it gives
    read/write/execute permissions to the user who created the file (how
    nice of it!).

Solution:
    Added the S_IRWXU flag to the open() function call.

Platforms tested:
    HP-UX 11
    Arabica,
    Modi4,
    Verbena

Misc. update:
2003-06-11 17:18:37 -05:00
Quincey Koziol
204b899029 [svn-r7019] Purpose:
Compatibility fix

Description:
    The H5P[set|get]_fapl_mpiposix calls changed between v1.4.x and v1.5.x.

Solution:
    Wrap them in the v1.4 backward compatibility #ifdefs and update tests, etc.

Platforms tested:
    FreeBSD 4.8 (sleipnir) w/paralle & v1.4 compatibility
    h5committest pointless
2003-06-10 14:05:06 -05:00