Cleanup
Description:
Removed the option (--enable-parallel=mpich). It did not work.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}? All passed.
Update
Description:
Cleaned up the debug printing of the generic property list. It was
printout NULL property values for non-existant properties and putting
multiple properties into one group.
Platforms tested:
Eirene (too small change for full testing)
Bug fix
Description:
Array testing routine is creatint huge arrays on the function stack
which causes a segmentation fault on Linux & FreeBSD when threadsafe
support is enabled.
Solution:
Allocate data for test dynamically instead of automatically.
In general, this should be the preferred method for all data arrays.
Platforms tested:
FreeBSD 4.7 (sleipnir) w/threadsafe enabled.
Code cleanup
Description:
Finish checkin of H5A API cleanups with header files I forgot on the first
checkin pass.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir)
Code Cleanup & New Tests
Description:
tmisc.c:
Switched from using H5_HAVE_COMPRESSION flag in favor of
H5_HAVE_FILTER_DEFLATE.
dsets.c:
Switched from using H5_HAVE_COMPRESSION flag in favor of
H5_HAVE_FILTER_DEFLATE.
Refactored I/O filter tests to allow new filters to be [more] easily
added.
Added tests for shuffle & deflate+shuffle I/O filters (if the filter(s)
are enabled).
Added test for creating a new dataset with a filter that is not
available.
Added test for attempting to read a dataset created with a filter that
is not available.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir)
Code Cleanup & New Feature
Description:
H5config.h.in:
Removed H5_HAVE_COMPRESSION & H5_HAVE_FILTER_GZIP flags.
Added H5_HAVE_FILTER_DEFLATE flag.
H5Z.c:
H5Zprivate.h:
H5Zpublic.h:
Switched from using H5_HAVE_COMPRESSION flag in favor of
H5_HAVE_FILTER_DEFLATE.
Added H5Zunregister & H5Zfilter_avail API functions.
Changed a numeric constant (256) to a symbolic constant
(H5Z_FILTER_RESERVED).
Automatically add the shuffling filter to the list of available filters
(when it is enabled).
Moved prototypes for H5Z_filter_deflate & H5Z_filter_shuffle from the
public header into the private header.
H5Zdeflate.c:
Switched from using H5_HAVE_COMPRESSION & H5_HAVE_FILTER_GZIP flags in
favor of H5_HAVE_FILTER_DEFLATE.
Cleaned up formatting & error reporting a bit.
H5Zshuffle.c:
Rewrote shuffling algorithm to be more efficient.
Added error checking & reporting.
Added standard Pablo information.
Added standard function header comment.
Added FUNC_ENTER & FUNC_LEAVE macros.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir)
Code cleanup, Feature enhancement
Description:
Improve hashing algorithm to not generate as many clashes.
Avoid using H5MD_realloc when changing the size of a chunk on disk.
Instead, use H5MF_free followed by H5MF_alloc, which avoids copying the
information from the space for the previous chunk to the space for the
new chunk, since we are going to overwrite the chunk with new data anyway.
This change should both improve I/O performance in situations where
compressed chunks are being overwritten as well as reduce the space used
in the file during that situation.
Cleaned up error handling in a few cases.
Removed old debugging printf()s.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir)
Bug Fix
Description:
Free blocks of space in the file which were merged with a block before them
were not updating the free list information correctly, allowing space in
the file to over-allocated and potentially corrupted.
Solution:
Correct address of free block during merging.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
FreeBSD 4.7 (sleipnir)
New feature
Description:
Added TIMESTAMP and event markers. Easier to tell the chronical events.
Turned of echo mode. Added an option to turn it on.
Platforms tested:
Only in eirene.
Purpose:
add "shuffle" filter note
Description:
Solution:
Platforms tested:
Misc. update:
Update MANIFEST if you add or remove any file.
Update release_docs/RELEASE for bug fixes, new features, etc.
Update applicable document files too.
Purpose:
Add a testing case for shuffling algorithm.
Description:
A control test:
Since shuffling 8-bit array should not change the original result; so we use a
8-bit array to test whether after shuffling the array keeps the same values.
Solution:
Platforms tested:
eirene,arabica,modi4
Misc. update:
Update MANIFEST if you add or remove any file.
Update release_docs/RELEASE for bug fixes, new features, etc.
Update applicable document files too.
Purpose:
Adding internal shuffle filter
Description:
With the combination of shuffling filter with general compression
algorithm, the compression ratio may be improved without adding much
encoding and decoding time for many real NASA datasets(especially
floating data) and other application
datasets(See techNotes).
Solution:
SHuffle the bytes within the data to utilize the locality.
Platforms tested:
arabica , eirene, modi4
Misc. update:
Update MANIFEST if you add or remove any file.
Update release_docs/RELEASE for bug fixes, new features, etc.
Update applicable document files too.
FPHDF5 Fixups
Description:
- Stopped using API calls in the H5FPclient code. It now uses
internal library calls.
- Removed some FIXME comments because they've been fixed.
- Small fix for an enum starting at 37 for no reason :-)
Platforms tested:
Eirene (only affects FPHDF5, so no need to test 3 platforms just yet).
Code cleanup
Description:
Added some comments and made some minor code cleanups
Platforms tested:
minor change, only testing on FreeBSD 4.7 (sleipnir) w/parallel
Update
Description:
Changed some of the asserts to check that a non-NULL H5F_t* is passed
in.
Platforms tested:
Eirene PP
Arabica Fortran
Modi4 PP Fortran
Update
Description:
Added code which performs an update when there's a dataset creation.
Commented on some FIXMEs which were in the code.
Platforms tested:
Eirene PP
Arabica Fortran
Modi4 PP Fortran
Code Movement
Description:
Moved definition of the H5D_t data structure into the H5Dprivate.h
header file. With the FPHDF5 stuff, we need access to this data
structure.
Platforms tested:
Eirene...change small, so no need for all three tests.
New feature.
Description:
Add in '--enable-filters=filter1,filter2' flag to configure script. This
can also be used as '--enable-filters=all' or just '--enable-filters' to
enable all the internal I/O filters in the library.
This flag can also be set to '--disable-filters' to disable all the internal
I/O filters. Individual filters can not be disabled due to the limitations
of autoconf.
Additionally, added "H5_HAVE_FILTER_<foo>" macros to H5pubconf.h header
file, so the presence of each filter can be detected.
This is in preparation for Kent's shuffling filter to be imported shortly.
Platforms tested:
Tested h5committest {arabica (fortran), eirene (fortran, C++)
modi4 (parallel, fortran)}
Tested FreeBSD 4.7 (sleipnir) also
Fix Windows portability bug
Description:
"long long" is not defined on Windows.
Solution:
Use our internal definition of "long_long" instead.
Platforms tested:
eyeballed.
Fix Windows portability bug
Description:
"long long" is not defined on Windows.
Solution:
Use our internal definition of "long_long" instead.
Platforms tested:
eyeballed.
Improvement
Description:
if neither -f option nor $HDF5_PARAPREFIX was set, it exited.
Solution:
Use '.' (current directory) if neither -f option nor $HDF5_PARAPREFIX
is used. Try to proceed as much as possible.
Platforms tested:
only sleipnir since it was a simple fix and was failing in sleipnir
only.
Code Cleanup
Description:
A function was returning "NULL" instead of "FAIL" for an error
condition. Renamed the variable "class" to "h5_class" since class is
a keyword in C++ and might mess up with a C++ compiler...
Platforms tested:
Eirene pp (too small a change for 3 tests)
Code cleanup
Description:
Cleaned up some error values that were incorrect, added some assertions
and refactored the integer & floating-point native conversions some.
Platforms tested:
FreeBSD 4.7 (sleipnir), too small for h5committest
