Commit Graph

437 Commits

Author SHA1 Message Date
jhendersonHDF
2515bbd922
Fix Java JNI warnings (#4229) 2024-03-24 18:09:05 -07:00
bmribler
62a905ae4a
Fix URLs (#4210)
Also removed Copyright.html context because it's no longer valid.
2024-03-22 12:06:09 -05:00
jhendersonHDF
330b80a266
Add support for _Float16 16-bit floating point type (#4065)
Fixed some conversion issues with Clang due to problematic undefined
behavior when casting a negative floating-point value to an integer

Fixed a bug in the library's software integer to floating-point
conversion function where a user's conversion exception function
returning H5T_CONV_UNHANDLED in the case of overflows would result in
incorrect data after conversion

Added configure checks for functions and macros related to _Float16
usage since some compilers expose the datatype but not the functions or
macros

Fixed a dt_arith test failure when H5_WANT_DCONV_EXCEPTION isn't defined

Fixed a few warnings from not explicitly casting some _Float16 variables
upwards
2024-03-18 21:36:46 -07:00
jhendersonHDF
a56675e12a
Fix some minor warnings (#4165) 2024-03-16 19:43:47 -07:00
Sean McBride
f309fcebbd
Issue #1824: Replaced most remaining sprintf with safer snprint (#4003) 2024-02-13 08:22:17 -06:00
Allen Byrne
6b22af7c43
Add abi-complience check and upload to releases (#3996) 2024-02-08 07:58:08 -06:00
Allen Byrne
365e23340c
Fix doxygen errors (#3962)
* Switch warnings as errors to default OFF

* Enable mac docs

* Add doxygen action uses step

* Use html div around snippet

* Allow preset name to be an argument to cmake-ctest.yml
2024-01-29 07:38:54 -06:00
Allen Byrne
6f2d22d86e
Add variable option syncing for examples (#3885) 2023-12-14 12:50:30 -06:00
Allen Byrne
fc88fcde10
Develop merge examples (#3851)
* Merge examples repo into library

* Change grepTest to be more fault-tolerant

* Update examples macro file

* Exclude all Fortran examples from doxygen
2023-11-27 15:30:15 -06:00
Allen Byrne
3ea21ccb3e
Add HDF5_DISABLE_TESTS_REGEX option to skip tests (#3859) 2023-11-22 07:51:30 -06:00
Robert Adam
87b3e7c821
Don't build util tests when HDF5_EXTERNALLY_CONFIGURED=ON (#3781)
Fixes #3780
2023-10-30 12:47:06 -05:00
Dana Robinson
29b27b7761
Clean Java test files on Autotools (#3740)
Removes generated HDF5 and text output files when running `make clean`.
2023-10-21 11:44:16 -07:00
jhendersonHDF
34fcb9c5a4
Fix several spelling/grammar issues (#3621) 2023-10-03 09:01:28 -07:00
Allen Byrne
1529ec0ab3
Develop tools move (#3580)
Reorganizes the tools files to support the VOL tests
2023-09-26 13:46:55 -07:00
jhendersonHDF
e64c946e14
Correct comments about H5Z_FILTER_NONE (#3572) 2023-09-22 08:46:19 -05:00
Dana Robinson
44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00
Allen Byrne
80fe48f2d3
Correct java test dimension (#3482) 2023-09-01 10:52:24 -07:00
Allen Byrne
7ed8dd7813
Windows runtime items go into the bin folder (#3320) 2023-08-02 09:29:20 -07:00
Dana Robinson
560110dbc7
Removes the HD prefix from java C99 calls (#3149)
POSIX calls (HDstrndup, etc.) are unchanged
2023-06-18 21:55:57 -07:00
Dana Robinson
41b474bf4a
Remove hbool_t/TRUE/FALSE from java (#3145)
Replaces with bool/true/false
2023-06-16 07:30:56 -07:00
Sean McBride
68eba3da69
Many clang -Wextra-semi-stmt fixes (#2537)
* Adds semicolons to function-like macros
* Adds a do..while(0) loop to some macros
* Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END
2023-06-15 21:49:02 -07:00
Allen Byrne
57c71cb983
HDF5Array arrayify is missing break statement #3056 (#3060) 2023-06-06 12:38:59 -07:00
Dana Robinson
40324e0c31
Cleans up Java JNI warnings and add java to -Werror checks (#2383) 2023-05-27 09:49:37 -07:00
Dana Robinson
1e52bc27ee
Fix assert in Debug Windows Java JNI (#3012)
Use of an uninitialized H5L_info2_t struct caused some JNI tests to
raise asserts, causing a dialog box to be emitted, which would hang
automated tests.

Initializing the struct fixes the problem.

This change also re-enables tests in the Windows Debug GitHub actions.
2023-05-25 10:47:46 -07:00
Dana Robinson
5c2e434dc6
Fix 'datatype' misspellings ('dataype') (#2984) 2023-05-19 09:05:23 -07:00
Allen Byrne
1c03b7d687
Fix java depends and pdb lib install (#2720)
* Fix java depends and pdb lib install

* Correct end of for loop depends

* fix location of set last_test
2023-04-13 12:11:35 -07:00
Allen Byrne
e94071fe53
Change name of test file to avoid conflict (#2701) 2023-04-12 12:50:46 -07:00
Allen Byrne
fa388e6ba4
Update java logger version (#2643) 2023-04-03 14:36:23 -07:00
Dana Robinson
7fd9a4435f
Fix minor things noted when doing 1.10 merges (#2610)
* Duplicated HDF_RESOURCES_DIR from cmake_ext_mod merge
* Typos in comments
2023-03-23 22:55:18 -05:00
Mark Kittisopikul
f35a99e4e6
Fix 2nd argument of Java H5Fis_accessible (#2535) 2023-03-17 12:25:56 -05:00
Larry Knox
48a3d92d04
Remove duplicated "help@hdfgroup.org" lines in file headers. (#2441) 2023-02-10 19:28:57 -08:00
Allen Byrne
9f5cf0a457
H5F_LIBVER_LATEST changes for move to 1.15 (#2288)
* H5F_LIBVER_LATEST changes for move to 1.15

* Add new default api check

* Format fixes

* Fix default configure

* fix lib version tests

* Fix another version variable

* Add 1.14 doc link
2022-12-21 10:07:25 -08:00
Allen Byrne
c1e44d32e6
Fix doxygen warnings and remove javadocs (#2324)
* Fix doxygen warnings and remove javadocs

* fix typo
2022-12-20 16:59:40 -06:00
Allen Byrne
2376723d4a
Develop jni trans (#2266)
* Add compound and refactor out atomic types

* Add Array String tests back

* Convert Attribute version of compound example

* Update transfer atom8ic read to return object
2022-12-05 22:29:42 -06:00
Allen Byrne
719d800499
Refactor JNI translate functions to a recursive switch on datatype (#2232) 2022-11-15 22:44:33 -06:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Larry Knox
0173706826
Update develop branch version to 1.13.4-1 (#2189)
* Updated version to 1.13.4-1 after creating hdf5_1_13_3 branch for 1.13.3
release.
Added new version to exceptions in lines 74-5 of src/H5.c
2022-10-26 11:07:17 -05:00
Allen Byrne
9c61f7b1e1
JNI: Improve varlen datatype handling in H5A/H5D read/write functions (#2156)
* Improve JNI VL datatype read/write to handle complex combinations

* Implement VL of VL JNI writes and reads

* Add Java VLofVL test for attributtes

* Changes to address review issues

* Fix H5Aread vl blocks
2022-10-25 23:33:30 -05:00
Allen Byrne
ea902f9ace
Implement option for using CMake GNUInstallDirs (#2175)
* Implement option for using CMake GNUInstallDirs

* Add release notes
2022-10-25 08:50:43 -07:00
Allen Byrne
c114bd64b0
Fix mostly java warnings, and cpp cast (#2134) 2022-10-03 13:31:32 -05:00
Allen Byrne
45178c87a3
develop Merge doxygen from 1.12 branch (#2095) 2022-09-14 15:44:24 -05:00
Allen Byrne
c8fdd92cd4
Update CMake code to 3.18 minimum version (#2080)
* Update CMake code to 3.18 minimum version

* Updated release note
2022-09-02 17:31:29 -07:00
jhendersonHDF
5719187a34
Fix Java tests for Developer build modes (#2079) 2022-08-29 09:00:42 -07:00
jhendersonHDF
281db5876e
Cleanup some warnings in Java JNI code (#2034) 2022-08-19 09:05:43 -07:00
Dana Robinson
7f6261a677
Removes cmake_ext_mod (files moved to cmake) (#2041)
At one time this content was a git submodule shared between several
projects but that time has long passed.
2022-08-19 07:54:42 -07:00
Larry Knox
25ef534039
Update version to 1.13.3-1 after creating hdf5_1_13_2 branch for 1.13.2 (#2004)
release.
Added new version to exceptions in line 75 of src/H5.c.
2022-08-12 08:17:25 -05:00
Larry Knox
029cde6111 Revert "Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release"
This reverts commit c58558e872.

H5TEST-tcheck_version-release failed.
2022-08-11 22:45:43 -05:00
Larry Knox
c58558e872 Increment version to 1.13.3-1 after creating hdf5_1_13_2 branch for release
of HDF5 1.13.2.
2022-08-11 22:15:46 -05:00
Allen Byrne
ec5100bf26
Fix Cmake depends prop (#1995) 2022-08-11 09:23:16 -07:00
Allen Byrne
29c8937f60
Remove misnamed java vol clear test (#1990) 2022-08-10 14:20:41 -07:00