Commit Graph

15711 Commits

Author SHA1 Message Date
Allen Byrne
dce6ead200 Merge pull request #2 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '203b2b2e75816bfd0f4d54ecd2cb1f41b1247447':
  Windows returns -1 instaed of 255 as on linux for the test
2016-08-30 12:56:46 -05:00
lrknox
b368f0de8d Removed the -p option from the command to run autogen.sh. It interfered
with running chkmanifest on a machine with the correct autotools
versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh
script says the option is for HDF group use only and is likely to be
removed.  The same effect can be achieved by adding
/usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-30 10:58:12 -05:00
Allen Byrne
203b2b2e75 Windows returns -1 instaed of 255 as on linux for the test 2016-08-30 10:27:07 -05:00
Allen Byrne
3b878ea9d9 Merge pull request #1 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop
* commit 'ba5652ffc27be96fa7275b039ce2c8e249751657':
  Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository.
2016-08-29 17:01:20 -05:00
lrknox
ba5652ffc2 Translate svn commands to git commands for chkmanifest and bbrelease
scripts with source in git repository.
2016-08-29 16:42:53 -05:00
Allen Byrne
b947f7e911 [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.
Verified by user, who reported issue.
2016-08-25 13:57:27 -05:00
Vailin Choi
169014d154 [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310.
Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
2016-08-24 15:12:18 -05:00
Allen Byrne
42d55a0f7d [svn-r30318] whitespace cleanup 2016-08-24 14:50:39 -05:00
Allen Byrne
2d6dd8ea64 [svn-r30317] Whitespace cleanup 2016-08-24 14:47:56 -05:00
Allen Byrne
4b471dea84 [svn-r30316] Use dns name for CDash instead of ip address 2016-08-22 13:31:38 -05:00
Allen Byrne
241dc68b48 [svn-r30315] HDFFV-9972: Fix test reference and change default for H5Iget_name in JNI API. 2016-08-22 13:07:01 -05:00
Allen Byrne
3c331b231a [svn-r30314] HDFFV-9971: Change the usage of a CMake variable for the build type to the recommended variable name. Updated documentation. 2016-08-22 12:22:38 -05:00
Allen Byrne
737bb56735 [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.
Added windows name suffix for debug to CMake cmd_arg for examples and test.
Fix issues discovered under debug testing;
   Create a version of H5Iget_name that correctly returns the name.
   Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return.
   Update example to use new H5Iget_name API.
   
   Tested: windows under debug
2016-08-22 12:05:00 -05:00
Allen Byrne
f14e4b3e20 [svn-r30312] HDFFV-9706: Commit changes as discussed in HDF5-379. 2016-08-22 11:36:59 -05:00
Binh-Minh Ribler
b1c4fd77d9 [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.
trunk:
Description:
    Continued rearranging the classes to model the relationship of HDF5
    objects more accurately.  The changes included:
    - in the baseclass list of Attribute, changed "public IdComponent" to
      "public H5Location", because location sometime can be specified with
      attribute
    - moved H5A wrappers in H5Location to H5Object because H5A functions
      can't be called on attribute id
    - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr
    - removed Attribute::getFileName and Attribute::flush, because
          H5Location has them
    - result of the modified partial class diagram, regarding Attribute

                                IdComponent
                                     |
                                H5Location   AbstractDs
                                /       \   /
                        H5Object     Attribute
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-22 01:29:29 -05:00
Vailin Choi
ae18cf66d8 [svn-r30310] Fix daily test failure for previous checkin #30308.
Tested on platypus and mayll.
2016-08-21 19:21:20 -05:00
Binh-Minh Ribler
c78f1ec882 [svn-r30309] Purpose: Fix bug HDFFR-9920
Description:
    Rearranged the classes to model the relationship of HDF5 objects more
    accurately.  The changes included:
    - moved CommonFG's methods to Group
    - removed CommonFG from Group's base class list
    - removed CommonFG from H5File's base class list and changed
      "public H5Location" to "public Group" in the base class list
    - CommonFG became unused
    - result of the modified partial class diagram:

                                IdComponent
                                     |
                                H5Location
                                /
                        H5Object
                           |
                        /  /  \
                DadaType Group DataSet
                          |
                        H5File
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-19 23:34:26 -05:00
Vailin Choi
c8af99f530 [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute which is a compound datatype consisting of
a variable length string.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-19 15:58:16 -05:00
Dana Robinson
c58ca9e28b [svn-r30306] Updated vfd test to be better about fapls and h5_reset().
Prevents the test from segfaulting in other sub-tests
when a previous test fails.

Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial + direct VFD (vfd test only)
           Also tested with a forced error to ensure
           that the test no longer segfaults and 
           confirmed that all test files are cleaned up.
2016-08-19 11:30:05 -05:00
Dana Robinson
00c508dc68 [svn-r30303] Fixed unbalanced parentheses in H5F_SAME_SHARED macro.
This version of the macro isn't used anywhere in the
HDF5 source.

Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial
2016-08-18 14:09:42 -05:00
Scot Breitenfeld
79b14e8b4d [svn-r30301] Changed the print ordering of the SIZE_OF/KIND program output in order to match what is done in cmake.
Tested: gnu, jelly.
2016-08-18 13:53:24 -05:00
Scot Breitenfeld
5010195435 [svn-r30300] Fixed the ordering for KIND and SIZE_OF in the fortarn program in order to match the sed commands.
Should only matter for the NAG compiler.

Tested: (gnu, jelly)
2016-08-18 13:24:02 -05:00
Dana Robinson
6d7ac8aa15 [svn-r30297] Changed FAIL_STACK_ERROR to TEST_ERROR in test/vfd.c.
Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial, vfd test only
2016-08-18 09:20:03 -05:00
Dana Robinson
9f163e69f5 [svn-r30295] Minor whitespace cleanup in h5test.c.
Tested on: 64-bit Ubuntu 16.04 LTS w/ gcc 5.4.0
           Autotools serial w/ make check-vfd
2016-08-17 13:59:45 -05:00
Quincey Koziol
e10e6721a6 [svn-r30292] Description:
Correct failure on older Windows compilers.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-16 09:02:21 -05:00
Vailin Choi
197b29ced6 [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.
This is the second part of the fix--see crucible review HDF5-383.
Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
2016-08-14 18:02:49 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description:
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-13 04:23:53 -05:00
Binh-Minh Ribler
ae0b749012 [svn-r30279] Purpose: Code improvement (HDFFR-9725)
Description:
    Removed deprecated functions in previous releases due to missing const.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-12 01:55:43 -05:00
Neil Fortner
7ee176d29b [svn-r30275] Rework test_mf_bug1 to work with multi and split drivers.
Tested: ummon
2016-08-09 16:36:01 -05:00
Binh-Minh Ribler
b3017997a8 [svn-r30272] Purpose: Code improvement
Description:
    - Added "const" to arguments that should be const
    - Added "const" to const functions, i.e., function that don't change
      the objects they operate on.
Platforms tested:
    Linux/32 2.6 (jam)
    Linux/64 (platypus)
    Darwin (osx1010test)
2016-08-09 00:29:50 -05:00
Neil Fortner
7de719287a [svn-r30270] Fix an issue that could occur when allocating a chunked dataset in parallel,
with an alignment threshold set to be larger than the chunk size but smaller
than the size of the small data aggregator.

Tested: koala, ostrich (h5committest); jelly, ummon
2016-08-08 16:56:50 -05:00
Neil Fortner
36c595e5ea [svn-r30268] Remove failure causing code in test/mf.c unintentionally added in r30264. 2016-08-08 15:37:56 -05:00
Allen Byrne
67a8c2639a [svn-r30266] Add support for GIT to external filter access 2016-08-08 14:52:13 -05:00
Neil Fortner
297268f238 [svn-r30264] Fixed an issue that could occur when using H5Pset_alignment where a block could
be unaligned, causing an assertion failure.

Tested: koala, ostrich, jelly (h5committest), ummon
2016-08-08 13:46:21 -05:00
Vailin Choi
4d358ef0af [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has no append callback registered.
Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
2016-08-05 15:13:54 -05:00
Scot Breitenfeld
a4e4094c76 [svn-r30259] Fixed: HDFFV-9965: HDF5 Fails to build when sizeof or c_sizeof is not available in Fortran
Added the use of 'storage_size' if 'c_sizeof' is not available.

Tested (jelly, intel)
2016-08-05 13:30:53 -05:00
Allen Byrne
f0365885b4 [svn-r30254] Add missing import 2016-08-03 09:02:45 -05:00
Allen Byrne
b4ceb6c771 [svn-r30251] Ignore dlopen test - created HDFFV-9962 2016-08-02 10:45:38 -05:00
Allen Byrne
f72d425d9c [svn-r30250] Correct position of finally block for test 2016-08-02 10:29:43 -05:00
Allen Byrne
7e49cb802a [svn-r30245] remove incorrect copy 2016-08-01 16:44:43 -05:00
Allen Byrne
90d1a82839 [svn-r30243] Correct spelling 2016-08-01 13:23:09 -05:00
Allen Byrne
092e530f4a [svn-r30242] Cygwin does not implement the getpwuid the same as linux. 2016-08-01 13:22:17 -05:00
Allen Byrne
21cafd9cf4 [svn-r30241] JAVA-1920: new filter for tests. 2016-08-01 13:19:06 -05:00
Allen Byrne
0e99aa203a [svn-r30240] JAVA-1920: Create a filter plugin test that has a filter which calls a HDF5 function. 2016-08-01 13:17:36 -05:00
Allen Byrne
bac4cf8e92 [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h type headers. Also remove duplicated includes when h5private.h is used. 2016-08-01 12:38:34 -05:00
Allen Byrne
e55844b752 [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom commands. Fixes possible overruns on windows command lines. 2016-08-01 12:35:00 -05:00
Allen Byrne
1494413413 [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in h5diff_array.
Also format function block in h5diff_attr to eliminate excessive whitespace
2016-08-01 12:26:41 -05:00
Allen Byrne
4ce65b8585 [svn-r30235] HDFFV-9730: Fix functions for delete to use a specific dir instead of a possibly uninitialized variable. 2016-08-01 12:20:21 -05:00
Allen Byrne
db7a701126 [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests. 2016-08-01 12:03:56 -05:00
Allen Byrne
2bb3a09add [svn-r30231] HDFFV-9944: else statement and braces.
refactored out the assert statement since H5MM_xfree allows null argument.
2016-08-01 11:45:44 -05:00