Commit Graph

2605 Commits

Author SHA1 Message Date
Quincey Koziol
af25c747ad [svn-r27851] Description:
Normalization changes that wouldn't otherwise be necessary if the VDS branch
wasn't coming in shortly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-21 21:11:54 -05:00
Quincey Koziol
8fc9a9ba25 [svn-r27834] Description:
Close FAPL for external link test, to fix infinite loop closing the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial 
    (too minor to require h5committest)
2015-09-20 21:08:56 -05:00
Dana Robinson
944e42d5ea [svn-r27818] Minor warning fixes.
Tested on: h5committest
2015-09-17 12:21:34 -05:00
Quincey Koziol
ee7612be44 [svn-r27811] Description:
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly.  This
cleans up another batch of memory leaks, etc. within the library.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (h5committest forthcoming)
2015-09-16 17:27:49 -05:00
Quincey Koziol
222e7186ea [svn-r27810] Description:
Clean up resources on failure

Tested on:
    Linux/32 2.6.x (jam) w/Purify
2015-09-16 16:57:01 -05:00
Allen Byrne
12d5f2bb3c [svn-r27808] Update CMake files to use updated test files. 2015-09-16 16:38:16 -05:00
Quincey Koziol
81b5e1c51f [svn-r27807] Description:
Close memory leak on failure.

Tested on:
    Linux/32 2.6.x (jam) w/purify
2015-09-16 15:30:26 -05:00
Neil Fortner
d23cc2da70 [svn-r27806] Fix property list serialization for values encoded by H5Pset_chunk_cache to be
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.

Tested: jam, koala, ostrich (h5committest), ummon
2015-09-16 14:55:38 -05:00
Dana Robinson
2385b2b0ad [svn-r27800] Minor warning fixes in the library tests.
Tested on: jam (too minor for h5committest)
2015-09-16 08:54:23 -05:00
Dana Robinson
9af344117c [svn-r27794] Reintegration merge of features/autotools_rework branch with trunk
NOTES:

- Developers will have to run autogen.sh before building with the autotools.

- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.

- The generated error, overflow and version headers have been left in place.

- The generated H5LT parser code has also been left in place.

- There are no changes for CMake users at this time.

Tested on: h5committest
2015-09-15 15:38:57 -05:00
Quincey Koziol
b2f94f9faf [svn-r27774] Description:
Correct test reset code in plugin code and fix typo in testing script.

Tested on:
    Linux 2.6/32 (jam) w/serial
2015-09-14 14:53:47 -05:00
Quincey Koziol
43443b2208 [svn-r27773] Description:
Correct typos in fix.

Tested on:
    Linux 2.6/32 (jam) w/gcc
2015-09-14 14:27:31 -05:00
Quincey Koziol
02ce7e7386 [svn-r27772] Description:
Clean up warnings, address HDFFV-9524

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:39:09 -05:00
Quincey Koziol
050dd02387 [svn-r27771] Description:
Merge in part of Neil's property list fixes:  Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:21:31 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Allen Byrne
4b748365df [svn-r27748] Correct name of target 2015-09-10 09:19:43 -05:00
Allen Byrne
8e3464d2d0 [svn-r27747] Correct name of target 2015-09-10 09:18:54 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Quincey Koziol
26baf1a805 [svn-r27710] Description:
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-09 01:33:03 -05:00
Allen Byrne
7860f3f5b6 [svn-r27668] Increase timeout for objcopy 2015-09-03 09:48:18 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Allen Byrne
81ca9e4c79 [svn-r27627] Change hardcoded HDF5TESTEXPRESS value to use a CMake variable HDF_TEST_EXPRESS. 2015-08-31 15:08:56 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Neil Fortner
1847391fc5 [svn-r27605] Fix potential memory error when using a dataspace that was created with
H5Screate and had its extent set by H5Sextent_copy.

Tested: jam, ostrich (h5committest)
2015-08-28 14:43:03 -05:00
Allen Byrne
c491cf01bf [svn-r27590] Fix typo 2015-08-27 08:41:32 -05:00
Dana Robinson
606c16e111 [svn-r27587] Added a new API call (H5is_library_threadsafe) to the library. This call can
be used to determine at runtime if the library was built with thread-safety.

Fixes HDFFV-9496

Tested on: h5committest
2015-08-26 12:05:57 -05:00
Allen Byrne
6635d4c003 [svn-r27586] HDFFV-9497: Add back ALLOW_UNSUPPORTED OPTION.
Added new option SKIP_HDF5_FORTRAN_SHARED
2015-08-26 11:48:42 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure.
Tested: h5committest
2015-08-17 16:12:03 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk.
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
2015-08-14 14:58:54 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.
Tested: h5committest --PASSED--
2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
415eb5512b [svn-r27488] Merged the F2003_v1.10 branch to the trunk.
Tested: h5committest
2015-08-10 20:00:33 -05:00
Allen Byrne
1900d6a65d [svn-r27485] Change ExpressTest from default of 1 to 2. 2015-08-10 12:34:11 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code.
Tested: local linux with CMake
2015-08-05 16:01:07 -05:00
Allen Byrne
4d0187a483 [svn-r27465] Merge dual-binary CMake changes 2015-08-05 10:56:58 -05:00
Dana Robinson
ec5d13d65b [svn-r27460] Minor code cleanup in test/trefer.c
- Fixed an out-of-range char assignment.

- Added a couple of malloc() casts.

Tested on: jam (minor change, tests only)
2015-08-03 22:00:45 -05:00
Dana Robinson
117b936032 [svn-r27459] Merge of 27411 from revise_chunks.
Renamed a few "h5tri_t extended" variables to "h5tri_t was_extended".
Apparently, "extended" is a typedef name someplace in the headers used
on Solaris, which causes potentially confusing warnings to be emitted.

Tested on: h5committest
           Solaris w/ Solaris Studio (emu)
2015-08-03 21:19:25 -05:00
Albert Cheng
ac5a796db2 [svn-r27428] Bug fix: DAILYTEST-170
Description:
    XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith
    because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in
    r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623).

Solution:
    Reverse revisions
	r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro
	r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro
	r26627: bring back WANT_DATA_ACCURACY configure macro which is
	    used together with the above two macros. This also brings
	    back the enable-dconv-accuracy configure option.

Tested:
    h5committested.
    Also tested in ostrich using the XL compilers.
2015-07-24 02:04:52 -05:00
Scot Breitenfeld
ed0bae78a0 [svn-r27426] svn merge -r27377:27425 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-22 17:09:05 -05:00
Neil Fortner
f550bc0cea [svn-r27415] Fix potential error with H5I_clear_type which could occur when a callback closed
a different ID in the same type.  Added a new skiplist routine,
H5SL_try_free_safe, which iterates over items, freeing some of them, and which
intercepts and defers attempts to remove from the list outside of the main
iteration.  Changed H5I_clear_type to use this function.

Tested: jam, koala, ostrich (h5committest); ummon
2015-07-20 17:21:36 -05:00
Dana Robinson
94a6e02b3d [svn-r27407] Updated the H5_ATTR_* macros.
- Updated the preprocessor logic that defines the H5_ATTR_* macros. The Solaris
  Studio compiler understands __attribute__ but not the specific attributes
  that we use. The H5_ATTR_* macros are now defined as blank with that
  compiler which significantly cleans up the warnings, making debugging
  easier.

- Replaced a few lingering __attribute__ macros with H5_ATTR_* markup.

Tested on: h5committest
           Solaris w/ Solaris Studio (emu)
2015-07-18 00:40:06 -05:00
Scot Breitenfeld
985e8d02a4 [svn-r27327] svn merge -r27208:27326 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-02 14:12:03 -05:00
Quincey Koziol
ad37464819 [svn-r27296] Description:
Correct error with braces around macro (in production builds), also clean
up a few warnings.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
    Linux/32 2.6 (jam) w/serial & parallel
2015-06-29 15:22:30 -05:00
Quincey Koziol
89115b11b0 [svn-r27294] Description:
Clean up parameters to H5C__flush_single_entry: accept cache entry instead
of address, and make new flag for deleting entry from skiplist on destroy
instead of a separate parameter to the routine.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-29 10:19:34 -05:00
Quincey Koziol
8e94745298 [svn-r27293] Description:
Split parallel metadata cache code into separate source code modules.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    (too minor for h5committest)
2015-06-27 11:45:21 -05:00