H. Joe Lee
10450e0491
OESS-168: Remove clang warnings. ( #1280 )
2021-12-13 17:33:49 -06:00
H. Joe Lee
63687f1a12
OESS-168: Remove clang warnings. ( #1283 )
2021-12-13 17:33:32 -06:00
H. Joe Lee
be856f5ad1
OESS-168: Remove clang warnings. ( #1284 )
2021-12-13 17:33:09 -06:00
jhendersonHDF
300a4e2478
Call FUNC_ENTER immediately in H5_init_library ( #1287 )
2021-12-13 17:31:02 -06:00
jhendersonHDF
ca28e3e631
Fix free list tracking and cleanup cast alignment warnings ( #1288 )
...
* Fix free list tracking and cleanup cast alignment warnings
* Add free list tracking code to H5FL 'arr' routines
2021-12-13 17:30:22 -06:00
Gerd Heber
c88aed84ec
Make it easier to find version specific docs. ( #1260 )
...
* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
* Fixes for #1221 .
* Updated overview.
* Fixed image dependencies.
* CMake updates.
* Fixed SET.
* Better?
* Update doxygen/dox/Overview.dox
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-13 15:13:42 -06:00
jhendersonHDF
dd3c61c384
Fixes for async operations ( #1272 )
...
Setup VOL wrapping context for each "request" callback
Set H5ES_event_t "next" pointer to NULL when appending to event list
2021-12-10 22:48:50 -06:00
jhendersonHDF
c0a13fd9d8
Remove duplicate memcpy in chunk_file_cb ( #1285 )
2021-12-10 20:22:49 -06:00
H. Joe Lee
b54c738822
OESS-168: Remove clang warnings. ( #1282 )
...
* OESS-168: Remove clang warnings.
* OESS-168: Remove commented-out code.
* OESS-168: Address @gnuoyd review.
2021-12-10 16:01:25 -06:00
H. Joe Lee
70e70002c3
Remove extra space. ( #1274 )
2021-12-10 09:45:59 -06:00
H. Joe Lee
8c592a2f64
OESS-168: Remove clang warnings. ( #1277 )
2021-12-10 09:45:14 -06:00
Allen Byrne
5580d7ec81
Fix directory variable in shell scripts ( #1273 )
...
* Fix testswmr scripts with utils/test variable
* Change format of configure var assignment
* quote the variable value in configure
* Use sh.in expected var pattern
* Only ref builddir in script
* Create vars for utils/test and test as H5_<path>_BUILDDIR
* Use abs_top_builddir in test scripts
* Change script var to make it easier to read.
* Use @abs_top_builddir@ directly in paths
* Correct typos/comment
2021-12-09 23:06:53 -06:00
jhendersonHDF
364d8cc3e7
Initialize filter mask and chunk nbytes for 'Single' chunk index ( #1261 )
2021-12-09 15:28:52 -06:00
H. Joe Lee
e36aa06950
OESS-168: Remove clang warnings. ( #1269 )
2021-12-08 16:00:19 -06:00
Allen Byrne
83cf2cb15b
Convert vds swmr test script to powershell ( #1245 )
...
* Convert SWMR shell scripts to Windows powershell.
* Use $LastExitCode instead of $? in script
* Prevent execution in a different window
* Github #969 Use stdout instead of file for configure check (#1089 )
* Use stdout instead of file for configure check
* Make change requested by #1157
* Change fortran to use stderr for configure
* Correct typo
* remove obsolete file check
* Fortran statement fix
* Don't allow H5Pset(get)_all_coll_metadata_ops for DXPLs (#1201 )
* Fixes const warnings in H5ES package (#1211 )
* Quiets a 'set but not used' warning in h5diff_array.c (#1210 )
* Convert vds swmr test script to powershell
* Enable vdsswmr powershell test
* Add configure vdsswmr statement
* Correct powershell script vars
* Convert SWMR shell scripts to Windows powershell.
* Use $LastExitCode instead of $? in script
* Prevent execution in a different window
* Github #969 Use stdout instead of file for configure check (#1089 )
* Use stdout instead of file for configure check
* Make change requested by #1157
* Change fortran to use stderr for configure
* Correct typo
* remove obsolete file check
* Fortran statement fix
* Convert vds swmr test script to powershell
* Enable vdsswmr powershell test
* Add configure vdsswmr statement
* Correct powershell script vars
* Cleanup review issues
* Fix variable assignment
* Change the wait function to pass in the path
* Disable actual test execution until programs fixed
* Adjust copyright text
* Fix spelling
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2021-12-08 11:21:15 -06:00
H. Joe Lee
abb05bce6e
OESS-168: Remove clang warnings. ( #1263 )
2021-12-08 08:38:40 -06:00
Larry Knox
40a23b67ea
Correct spelling correction of preceed incorrectly to proceed. Should ( #1268 )
...
* Correct spelling correction of 'preceed' incorrectly to 'proceed'. It should be 'precede'.
2021-12-07 15:07:15 -06:00
Scot Breitenfeld
f859cb732b
Fixed Spelling Errors ( #1166 )
...
* fixed missed closing of a dataset
* fixed missed closing of a dataset
* fixed typo in error return
* Committing clang-format changes
* minor edits
* code format
* Committing clang-format changes
* code format
* minor edit
* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging
* Committing clang-format changes
* changed size_i in printf to reflect the I/O.
* Committing clang-format changes
* Fixed seg fault with xlf on BE with -qintsize=8
* fixed error function string
* spelling corrections via codespell, added new spell check github actions
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* misc
* misc
* misc
* misc
* misc
* Committing clang-format changes
* misc
* work around for https://github.com/codespell-project/codespell/issues/2137
* misc
* added missing file
* misc
* misc.
* misc
* switch to using Codespell with GitHub Actions
* misc.
* misc.
* fixed more sp errors
* Fix new typos found by codespell.
* fixed proceed with precede
* fixed variable in fortran test
* fixed minnum
* updated spelling list
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
Allen Byrne
d7466741ea
change windows os from 2016 to latest ( #1241 )
...
* change windows os from 2016 to latest
* Upgrade the VS version used.
* specify windows VS version
2021-12-01 09:48:29 -06:00
Allen Byrne
5fddfb8016
Fix windows test with floating point rounding issues ( #1237 )
...
* Check windows sdk version for test
* Correct variable reference form
* Use VERSION_LESS in IF check
2021-11-30 13:39:56 -06:00
Larry Knox
89ad105b1c
Update version to 1.13.1-1 after creation of branch for 1.13.0 release. ( #1236 )
2021-11-30 12:53:45 -06:00
Larry Knox
194714abe5
Fix indentation in RELEASE.txt to be consistent. ( #1232 )
2021-11-29 19:11:28 -06:00
Larry Knox
8a80aec36f
Make default to build high-level tools the same as default for ( #1234 )
...
high-level library.
2021-11-29 19:11:01 -06:00
rawarren
720ddb20f3
Add support for parallel tools based on the 3rd party library mpiFileUtils (libMFU) … ( #1177 )
...
Adds tool h5dwalk and configure options to enable building it.
Co-authored-by: Richard Warren <Richard.Warren@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Richard.Warren <richard.warren@jelly.ad.hdfgroup.org>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-11-29 15:25:23 -06:00
Allen Byrne
9cdc6d58bd
Fix Fortran REGEX and newlines ( #1226 )
...
* Fix order of fortran define
* fix typo
* Fix REGEX and newlines
2021-11-29 11:45:22 -06:00
jhendersonHDF
ed92286131
Only check HDF5_DRIVER in MPI I/O VFD if VFD isn't initialized ( #1213 )
2021-11-24 21:14:45 -06:00
jhendersonHDF
b3262c75d5
Fix a few H5CX warnings from recent init changes ( #1224 )
2021-11-24 16:22:09 -06:00
jhendersonHDF
7cf5c29615
Fix a few warnings after recent H5S const-related changes ( #1225 )
2021-11-24 16:20:30 -06:00
Dana Robinson
ca6f9e3716
Fixes an assert in H5Pget_filter_by_id1/2 w/ out-of-range IDs ( #1222 )
...
* Fixes an assert in H5Pget_filter_by_id1/2 w/ out-of-range IDs
Filter IDs < 0 or > H5Z_FILTER_MAX could trip an assert in the
library due to missing ID range checks in H5Pget_filter_by_id1/2.
The library now returns a normal error code when filter IDs are
out of range. Fixes HDFFV-11286.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-24 16:20:13 -06:00
Gerd Heber
5c06121976
Closes #1221 ( #1223 )
...
* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
* Fixes for #1221 .
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-24 08:32:53 -06:00
David Young
462e9a373f
Create 2D arrays on the heap in a different way ( #1169 )
...
* Create 2D arrays on the heap by malloc'ing `struct { TYPE arr[ROWS][COLS];
}`. This avoids the double-indirection through pointers and the
additional memory of H5TEST_ALLOCATE_2D_ARRAY().
This change will safely quiet the cast warning that PR #1129 was
intended to fix.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-23 08:09:05 -06:00
Gerd Heber
b9e4deec10
Next batch of Doxygen updates. ( #1180 )
...
* Sketch of the H5S life cycle.
* Committing clang-format changes
* Fix H5S_UNLIMITED snafu.
* Updated RM template and RM page.
* Added H5S life cycle.
* Committing clang-format changes
* Added H5T life cycle.
* Committing clang-format changes
* Cleaner layout (?)
* Cleaned the H5F life cycle. Called out unfinished biz.
* Committing clang-format changes
* Remaining life cycle skeletons.
* Committing clang-format changes
* Committing clang-format changes
* Added H5Z life cycle.
* Committing clang-format changes
* Added H5G life cycle.
* Committing clang-format changes
* H5 and H5I life cycle updates.
* Committing clang-format changes
* Added H5PL life cycle.
* Committing clang-format changes
* Added H5L life cycle.
* Committing clang-format changes
* Fix for Chris' comment.
* Add a variable for Doxygen pre-processor definitions.
* Forgot to add the H5M API.
* Clarify the H5Z life cycle.
* Committing clang-format changes
* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.
* Committing clang-format changes
* Clarified introduction and fixed missing label declaration.
* Added H5O life cycle.
* Committing clang-format changes
* H5O cleanup, part 1.
* Committing clang-format changes
* Cleaned up some of the endless repetition in H5O.
* Committing clang-format changes
* Cookbook & RFC draft layouts.
* Updated manifest.
* Updated the manifest, the example paths, and sketched the 1st recipe.
* Committing clang-format changes
* Outlined two more recipes.
* Committing clang-format changes
* More recipes and RFCs.
* Committing clang-format changes
* Draft of templatized RFC references.
* Another batch of RFC changes.
* Another batch of RFCs.
* Fixed reference.
* RFCs in reverse chronological order.
* First cut of RFCs.
* Fixed reference.
* Updated recipes.
* Updated recipes.
* More RFCs.
* Updated D*PL comments.
* Added H5P descriptions.
* Committing clang-format changes
* H5R life-cycle snapshot.
* Committing clang-format changes
* H5R life-cycle. Added line numbers to life-cycle examples.
* Committing clang-format changes
* Fixed formatting for H5Dchunk_iter().
* Added comment on collective mode requirement w/ compression.
* Simplified API compat. macro dox.
* More API vers. updates.
* Hide the async macro entrails.
* Latest VFD SWMR RFC.
* Create a tag file for permalinks.
* Added TODOs for metadoc.
* Removed duplication.
* Revised RM landing page.
* Trimmed more duplication.
* Committing clang-format changes
* Revised H5D.
* Committing clang-format changes
* Updated survey link.
* Added Doxygen RM entry template link.
* Added the "Multi-Thread HDF5" RFC.
* Added DOXYGEN_TAG_FILE.
* Added selection I/O RFC.
* Added the VFD Sub-filing RFC.
* Updated meta-documentation and added two old presentations.
* Added a few more RFCs (4).
* Fixed MANIFEST.
* Updated meta-documentation.
* Added Filters technical note.
* Fixed MANIFEST.
* Restore the path stripper.
* Experimental full-text search via Google.
* Better full-text search integration.
* Whoops. Forgot this one.
* Oh boy.
* Make CMake happy.
* Added "Debugging HDF5 Applications" technical note.
* Another batch of RFCs.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-23 08:05:40 -06:00
David Young
4b9ca8e1f6
Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the ( #1171 )
...
* Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the
raw H5R_ref_t bytes to a heap buffer that's known to have the right
alignment.
* Committing clang-format changes
* Use an automatic H5R_ref_t instead of malloc'ing one. Go ahead and
initialize the H5R_ref_t to all-0s so that arbitrary stack content
doesn't foul things up. Bail out with an error if `size` exceeds
`sizeof(H5R_ref_t)`.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-23 08:05:01 -06:00
jhendersonHDF
3f2271364e
Make sure plugin interface is initialized before property list interface phase 2 ( #1216 )
2021-11-23 08:04:11 -06:00
Dana Robinson
3a2b3bb035
Stop lying about H5S_t const-ness ( #1209 )
...
Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
2021-11-20 08:34:50 -06:00
Dana Robinson
49f7e00ebe
Quiets a 'set but not used' warning in h5diff_array.c ( #1210 )
2021-11-18 16:57:30 -06:00
Dana Robinson
56ba9da70b
Fixes const warnings in H5ES package ( #1211 )
2021-11-18 16:56:32 -06:00
jhendersonHDF
cae59a0f11
Don't allow H5Pset(get)_all_coll_metadata_ops for DXPLs ( #1201 )
2021-11-18 10:07:29 -06:00
Allen Byrne
aa2f6735fb
Github #969 Use stdout instead of file for configure check ( #1089 )
...
* Use stdout instead of file for configure check
* Make change requested by #1157
* Change fortran to use stderr for configure
* Correct typo
* remove obsolete file check
* Fortran statement fix
2021-11-17 23:53:00 -06:00
Allen Byrne
b823ddc526
Add javadoc to packages - HDFFV-11285 ( #1197 )
2021-11-16 23:13:59 -06:00
Larry Knox
28e92647f0
Move -Werror=int-conversion from error-general to error-5 in ( #1194 )
...
gnu-warnings (unrecognized command line option for gcc 4.85/4.93.
2021-11-13 22:11:25 -06:00
Dana Robinson
d224f98dbc
Quiets most const warnings in the fractal heap code ( #1188 )
2021-11-12 22:36:32 -06:00
David Young
08b1c6ac3c
Make it an error if the library implicitly converts from integer to ( #1165 )
...
pointer or from pointer to integer (-Werror=int-conversion). Also,
make it an error if the library explicitly converts to pointer from an
integer of a different size (-Werror=int-to-pointer-cast).
2021-11-12 21:25:14 -06:00
Dana Robinson
4475a12b5f
Fixes unused parameter warnings in the null VFD ( #1179 )
2021-11-12 20:11:23 -06:00
jhendersonHDF
b9da39d19f
Fix MPI Comm and Info leak in H5FD__mpio_delete ( #1189 )
2021-11-12 11:28:47 -06:00
Dana Robinson
e4956cdba9
Cleans up pointer and ID reset code in H5Pint.c ( #1182 )
2021-11-10 15:06:24 -06:00
Dana Robinson
f12228c9f2
Quiets const warning in H5RS code ( #1181 )
2021-11-10 15:04:19 -06:00
jhendersonHDF
a777e3075e
Fix H5DS warnings related to new H5DSwith_new_ref and H5VLobject_is_native APIs ( #1184 )
2021-11-10 12:09:38 -06:00
Dana Robinson
b488eb4ecc
Fixes FUNC_ENTER warnings in VFDs due to recent init changes ( #1178 )
2021-11-09 22:40:46 -06:00
Dana Robinson
25fe28eb04
Fixes const issues in the version 2 B-trees ( #1172 )
...
The operations that were changed are fundamentally not const since the
shadow operation can modify the node structure when SWMR is in use.
2021-11-09 12:31:00 -06:00
