* commit '7924eee0e5ee0745b784c635042b8633886fb799':
(1) Address the feedback from the PR review (2) Add release notes
Fix for HDFFV-10585 investigate hyperslab slowness: 1) Improve hyperslab performance when doing I/O from 1-d disjoint file dataspace to 1-d contiguous memory dataspace. 2) Move coding in H5D__chunk_io_init() that is constructing the chunk mappings to a separate routine.
* commit '0ea77179d507bd2c29f3b9b357a0c35d4077b29c': (39 commits)
Fix the errors when updating the versions in the new 1.13 develop branch.
add missing version to list
Add new versioned filename to list
Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND.
Remove file script
Update versioning to next major version
Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
Update to current external file population.
Revert else-if to single line.
Fix missing option and incorrect close
Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."
Revert "Fix for H5EA debug package when built in release mode."
Change print calls to HD-wrapped. Minor formatting tweaks (inc. regressions and in-file style-matching).
Refactor h5repackgentest to have more modular internals, for easier addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files.
Remove obsolete symbol
small syntax changes
Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
Change unused variable to generic form
Whitespace cleanup
...
1) Improve hyperslab performance when doing I/O from 1-d disjoint file dataspace
to 1-d contiguous memory dataspace.
2) Move coding in H5D__chunk_io_init() that is constructing the chunk mappings to
a separate routine.
Description:
Fixed tests to handle the case when a requested compression filter
is not available.
Platform tested
Linux/64 (jelly)
Darwin (osx1011test)
- Added new chunk query functions: H5Dget_num_chunks(), H5Dget_chunk_info(), and H5Dget_chunk_info_by_coord()
- Fixed iterator issue in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate()
* commit '96dab622e3bbe75d85b0cef3ca2bd5288cf4ac32':
Fixed error code and error messages Tested on Jelly (very minor)
Changed H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COOR to H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD per a review comment.
Updated comments
Updated based on reviews and refactored test code
Code cleanup and refactor
Re-ordered items w.r.t. date.
Fixed typo
Added notes about HDFFV-10677 and HDFFV-10661
HDFFV-10677 and HDFFV-10661
Description:
- Added functions to query chunk information:
H5Dget_num_chunks(dset_id, fspace_id, *nchunks)
Gets the number of written chunks that intersect with the given
dataspace. However, in this version, the intersection is not
yet completed. Thus, the number of all written chunks will be
returned.
H5Dget_chunk_info_by_coord(dset_id, *offset, *filter_mask, *addr, *size)
Given a chunk's logical coordinates, returns the chunk's filter,
address, and size.
H5Dget_chunk_info(dset_id, fspace_id, index, *offset, *filter_mask, *addr, *size)
Given a chunk's index, returns the chunk's logical coordinates, filter,
address, and size. The chunk belongs to a set of chunks that have
nonempty intersection with the specified dataspace. However, in
this version, the intersection is not yet completed, and the index
is of all the written chunks.
These functions comply with VOL.
- Fixed some oversights found in the library for the tests in chunk_info.c
to work correctly. The returned value from a callback function was not
checked in H5EA_iterate(), H5FA_iterate(), and H5D__none_idx_iterate().
This oversight caused a callback function to continue iterating even though
it's supposed to stop.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
* commit '2e5cd3d2b2d953420252c80ab5e32ac95ac0c5b3':
Fix compiler warnings with diabled ROS3 and HDFS VFDs. Fix misuse of [HD]strncpy and [HD]snprintf. Minor formatting changes. Fix test cleanup issue with java groups example.
* commit '0b868668bac0d268120844adb9ad216a9a8e1395':
Changed the directory name left out from the previous commit.
Changed the name of the temporary directory from 'tmp' to a special name to avoid possible conflicts.
* commit 'aeb145428f5e6bc51742fff031b0cf8cf6fbefbb':
Updated h5trav.c to emit output that doesn't require ddl changes for map support.
Fixed Map API CMake option
Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.
Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers.
Added the map (H5M) API
