Commit Graph

67 Commits

Author SHA1 Message Date
Scot Breitenfeld
def21b1e33
Added Fortran Async APIs (#2715)
H5A, H5D, H5ES, H5G, H5F, H5L and H5O async APIs were added.
2023-04-21 11:07:48 -05:00
Scot Breitenfeld
d2345e9f0c
Addressed various Doxygen grammar issues. (#2524)
* reviewed H5A

* Addressed various grammar issues.

* remove double words, spelling fixes

* replace the use of rawdata with raw data
2023-03-13 11:53:08 -05:00
mattjala
4b7bdfec69
Update ReferenceManual.dox (#2517) 2023-03-08 15:08:04 -06:00
Mark Kittisopikul
04682f2788
Fix H5Dchunk_iter doxygen example, cherry-pick of ef3bed6 (#2519) 2023-03-08 15:06:17 -06:00
Mark Kittisopikul
5d3d43b1ee
Fix new codespell issues (#2521)
* Fix new codespell issues

* Have codespell ignore ./config/sanitizer/sanitizers.cmake
2023-03-08 14:42:47 -06:00
Allen Byrne
877e4a67c5
Missing or misplaced entries in API reference tables #2470 (#2472)
* Missing or misplaced entries in API reference tables #2470

* Doxy corrections
2023-03-01 06:07:37 -08:00
Allen Byrne
2c9de7a9ae
Port VOL connector Guide to doxygen (#2333)
* Port VOL connector Guide to doxygen

* Fix spelling

* Updated VOL UG ref and added release note
2023-01-18 01:04:41 -08:00
Allen Byrne
9f5cf0a457
H5F_LIBVER_LATEST changes for move to 1.15 (#2288)
* H5F_LIBVER_LATEST changes for move to 1.15

* Add new default api check

* Format fixes

* Fix default configure

* fix lib version tests

* Fix another version variable

* Add 1.14 doc link
2022-12-21 10:07:25 -08:00
Allen Byrne
c1e44d32e6
Fix doxygen warnings and remove javadocs (#2324)
* Fix doxygen warnings and remove javadocs

* fix typo
2022-12-20 16:59:40 -06:00
Scot Breitenfeld
70cf2c390b
Removed idioms and misc. text clean-up (#2320)
* removed idioms and misc. text clean-up, Issue #2135

* removed idioms and misc. text clean-up, Issue #2135
2022-12-16 19:56:52 -08:00
Scot Breitenfeld
8102fa8c97
Only document Fortran functions (#2319)
* Only document Fortran functions

* Only document Fortran functions

* Only document Fortran functions

* Only document Fortran functions
2022-12-16 19:52:08 -08:00
Gerd Heber
10c693a04f
Update hdf5_header.html
Use less awkward language.
2022-12-15 08:49:19 -06:00
Allen Byrne
169896aedb
Remove hard-coded version text (#2260)
* Remove hard-coded version text

* Use macOS 11 until accum test is fixed see #2261
2022-11-16 15:13:46 -06:00
Gerd Heber
2025d047e2
Multidataset RFC updates (#2238) 2022-11-08 17:46:52 -08:00
Larry Knox
11dfa25910
Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Scot Breitenfeld
7d1997ff7b
Removed the file, func, line args in the _async APIs fpr doxygen (#2179)
* Removed the: file, func, line args in the _async APIs from the doxygen arguments. Documented H5ESclean.

* format fixes

* fixed DOXYGEN_PREDEFINED

* Fixed the #ifdet logic for doxygen, added missing multi-dataset va_args

* format fixes

* Use H5_DOXYGEN instead of H5_DOXYGEN_FORTRAN

* reordered multidataset declarations

* alt. for H5Aclose_async and H5Acreate_async

* made doxgyen API into seperate blocks

* updated codespell

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-10-25 10:41:38 -07:00
Allen Byrne
23e237e728
Port VOL User Guide to doxygen (#2165)
* Port VOL User Guide to doxygen

* Fix spelling

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-10-25 08:51:08 -07:00
Allen Byrne
ea902f9ace
Implement option for using CMake GNUInstallDirs (#2175)
* Implement option for using CMake GNUInstallDirs

* Add release notes
2022-10-25 08:50:43 -07:00
Allen Byrne
dcd332d231
Restructure ref manual presentation (#2123) 2022-09-26 22:49:29 -05:00
Allen Byrne
a9d8b469f4
Use doxygen snippets for common tables (#2104) 2022-09-16 12:45:06 -05:00
Allen Byrne
45178c87a3
develop Merge doxygen from 1.12 branch (#2095) 2022-09-14 15:44:24 -05:00
Scot Breitenfeld
99f17c7271
Doxygen Fortran (#2062) 2022-09-07 17:11:20 -05:00
Allen Byrne
c8fdd92cd4
Update CMake code to 3.18 minimum version (#2080)
* Update CMake code to 3.18 minimum version

* Updated release note
2022-09-02 17:31:29 -07:00
Gerd Heber
e1d6157c5d
Added VOL connector feature flag RFC. (#2064) 2022-08-24 10:30:15 -05:00
luzpaz
174505ca3c
Fix typos found in the rest of the hdf5 code-base (#1985)
* Fix typos found in the rest of the hdf5 code-base

* Typo in tool.cmake

* Revert "Typo in tool.cmake"

This reverts commit 06b8403d99.

* Fix clang-format styling
2022-08-10 13:57:26 -07:00
jhendersonHDF
bf07e0f2c9
Subfiling updates for release (#1963)
* Remove generated file h5fuse.sh

* Link pthreads library when Subfiling VFD is built

* Switch to MPI I/O driver for Subfiling HDF5 stub file

* Rough first implementation for Subfiling file deletion

* Subfiling VFD - get file dirname for file deletion

* Subfiling VFD - set lock callback to NULL for now to avoid performance
issues

* Committing clang-format changes

* Minor tidying up of Subfiling testing

* Fixups for Subfiling VFD support in tools

* Tidy up Subfiling public interface and add Doxygen

* Respect Subfiling configuration settings from application

* Add release note for Subfiling VFD

* Committing clang-format changes

* Committing clang-format changes

* Shorten some Subfiling environment variable names

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-08-04 10:56:48 -07:00
Gerd Heber
33f6ade6e7
Fixes #1946 (#1947) 2022-07-29 05:20:55 -07:00
Allen Byrne
ae414872f5
Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
Dana Robinson
96edaa304c
Removes padding-right from Doxygen href tags (#1934) 2022-07-26 09:23:11 -07:00
vchoi-hdfgroup
c835d16a59
Remove superfluous dot from hl doxygen. (#1891)
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
2022-07-14 09:32:09 -07:00
Dana Robinson
ff089f8e36
Updates the patterns in Doxyfile.in to accept H5*develop.h (#1865) 2022-07-11 06:35:46 -07:00
Gerd Heber
7e1bde1cb5
Merge pull request #1857 from gheber/fix-doxy-warnings-and-cosmetics
Fix Doxygen warnings and cosmetics
2022-07-08 20:16:43 -05:00
Gerd Heber
6bc41fb11c
Resolve Allen's comment. 2022-07-08 12:48:48 -05:00
Gerd Heber
52d6626254
Cosmetic changes to RM front 2022-07-08 06:06:47 -05:00
Gerd Heber
fe413fc6ff
Updated vfd swmr and reference rfcs (#1854)
* Add PDFs

* Update RFC table
2022-07-07 15:59:48 -07:00
Gerd Heber
9cd0d042f0
Update Doxyfile.in (#1849) 2022-07-06 13:01:36 -07:00
vchoi-hdfgroup
9e97a22b8b
Add doxygen for high level modules. (#1839)
* Add doxygen for high level modules.

* Committing clang-format changes

* Correct spelling based on spelling check.

* Committing clang-format changes

Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-07-01 08:42:15 -07:00
Allen Byrne
8b54201509
Develop sync (#1793)
* Synch update

* Branch sync changes
2022-06-09 08:35:33 -05:00
Scot Breitenfeld
e8ea850004
spelling fixes (#1561) 2022-03-31 10:42:30 -05:00
Gerd Heber
cfe4198b6c
Updated reference for Multi Dataset RFC. (#1442) 2022-02-18 08:02:10 -06:00
Scot Breitenfeld
8b3c09f780
Updated README.txt to README.md (#1375)
* H5Lexists docs: Removed reference to 1.8.16 since the change is the 1.8.x releases, HDFFV-11289

* H5Oget_info_by_name, name can be any object, not just a group

* Converted README.txt to README.md and updated files referring to README.txt to README.md.

* removed references to README.txt

* updated MANIFEST
2022-01-14 17:28:04 -06:00
Gerd Heber
e56b0a3d50
Documentation fixes right in time for the holidays (#1321)
* Sketch of the H5S life cycle.

* Committing clang-format changes

* Fix H5S_UNLIMITED snafu.

* Updated RM template and RM page.

* Added H5S life cycle.

* Committing clang-format changes

* Added H5T life cycle.

* Committing clang-format changes

* Cleaner layout (?)

* Cleaned the H5F life cycle. Called out unfinished biz.

* Committing clang-format changes

* Remaining life cycle skeletons.

* Committing clang-format changes

* Committing clang-format changes

* Added H5Z life cycle.

* Committing clang-format changes

* Added H5G life cycle.

* Committing clang-format changes

* H5 and H5I life cycle updates.

* Committing clang-format changes

* Added H5PL life cycle.

* Committing clang-format changes

* Added H5L life cycle.

* Committing clang-format changes

* Fix for Chris' comment.

* Add a variable for Doxygen pre-processor definitions.

* Forgot to add the H5M API.

* Clarify the H5Z life cycle.

* Committing clang-format changes

* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.

* Committing clang-format changes

* Clarified introduction and fixed missing label declaration.

* Added H5O life cycle.

* Committing clang-format changes

* H5O cleanup, part 1.

* Committing clang-format changes

* Cleaned up some of the endless repetition in H5O.

* Committing clang-format changes

* Cookbook & RFC draft layouts.

* Updated manifest.

* Updated the manifest, the example paths, and sketched the 1st recipe.

* Committing clang-format changes

* Outlined two more recipes.

* Committing clang-format changes

* More recipes and RFCs.

* Committing clang-format changes

* Draft of templatized RFC references.

* Another batch of RFC changes.

* Another batch of RFCs.

* Fixed reference.

* RFCs in reverse chronological order.

* First cut of RFCs.

* Fixed reference.

* Updated recipes.

* Updated recipes.

* More RFCs.

* Updated D*PL comments.

* Added H5P descriptions.

* Committing clang-format changes

* H5R life-cycle snapshot.

* Committing clang-format changes

* H5R life-cycle. Added line numbers to life-cycle examples.

* Committing clang-format changes

* Fixed formatting for H5Dchunk_iter().

* Added comment on collective mode requirement w/ compression.

* Simplified API compat. macro dox.

* More API vers. updates.

* Hide the async macro entrails.

* Latest VFD SWMR RFC.

* Create a tag file for permalinks.

* Added TODOs for metadoc.

* Removed duplication.

* Revised RM landing page.

* Trimmed more duplication.

* Committing clang-format changes

* Revised H5D.

* Committing clang-format changes

* Updated survey link.

* Added Doxygen RM entry template link.

* Added the "Multi-Thread HDF5" RFC.

* Added DOXYGEN_TAG_FILE.

* Added selection I/O RFC.

* Added the VFD Sub-filing RFC.

* Updated meta-documentation and added two old presentations.

* Added a few more RFCs (4).

* Fixed MANIFEST.

* Updated meta-documentation.

* Added Filters technical note.

* Fixed MANIFEST.

* Restore the path stripper.

* Experimental full-text search via Google.

* Better full-text search integration.

* Whoops. Forgot this one.

* Oh boy.

* Make CMake happy.

* Added "Debugging HDF5 Applications" technical note.

* Another batch of RFCs.

* Fixes for #1221.

* Updated overview.

* Fixed image dependencies.

* CMake updates.

* Fixed SET.

* Better?

* Update doxygen/dox/Overview.dox

* Fixed documentation errors. Added missing version info.

* Callback documentation updates.

* Fixed indexing errors in the outline.

* Doxygen-ized the HDF5 glossary.

* Fix a few minor typos
.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2022-01-13 22:11:39 -06:00
Gerd Heber
c88aed84ec
Make it easier to find version specific docs. (#1260)
* Sketch of the H5S life cycle.

* Committing clang-format changes

* Fix H5S_UNLIMITED snafu.

* Updated RM template and RM page.

* Added H5S life cycle.

* Committing clang-format changes

* Added H5T life cycle.

* Committing clang-format changes

* Cleaner layout (?)

* Cleaned the H5F life cycle. Called out unfinished biz.

* Committing clang-format changes

* Remaining life cycle skeletons.

* Committing clang-format changes

* Committing clang-format changes

* Added H5Z life cycle.

* Committing clang-format changes

* Added H5G life cycle.

* Committing clang-format changes

* H5 and H5I life cycle updates.

* Committing clang-format changes

* Added H5PL life cycle.

* Committing clang-format changes

* Added H5L life cycle.

* Committing clang-format changes

* Fix for Chris' comment.

* Add a variable for Doxygen pre-processor definitions.

* Forgot to add the H5M API.

* Clarify the H5Z life cycle.

* Committing clang-format changes

* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.

* Committing clang-format changes

* Clarified introduction and fixed missing label declaration.

* Added H5O life cycle.

* Committing clang-format changes

* H5O cleanup, part 1.

* Committing clang-format changes

* Cleaned up some of the endless repetition in H5O.

* Committing clang-format changes

* Cookbook & RFC draft layouts.

* Updated manifest.

* Updated the manifest, the example paths, and sketched the 1st recipe.

* Committing clang-format changes

* Outlined two more recipes.

* Committing clang-format changes

* More recipes and RFCs.

* Committing clang-format changes

* Draft of templatized RFC references.

* Another batch of RFC changes.

* Another batch of RFCs.

* Fixed reference.

* RFCs in reverse chronological order.

* First cut of RFCs.

* Fixed reference.

* Updated recipes.

* Updated recipes.

* More RFCs.

* Updated D*PL comments.

* Added H5P descriptions.

* Committing clang-format changes

* H5R life-cycle snapshot.

* Committing clang-format changes

* H5R life-cycle. Added line numbers to life-cycle examples.

* Committing clang-format changes

* Fixed formatting for H5Dchunk_iter().

* Added comment on collective mode requirement w/ compression.

* Simplified API compat. macro dox.

* More API vers. updates.

* Hide the async macro entrails.

* Latest VFD SWMR RFC.

* Create a tag file for permalinks.

* Added TODOs for metadoc.

* Removed duplication.

* Revised RM landing page.

* Trimmed more duplication.

* Committing clang-format changes

* Revised H5D.

* Committing clang-format changes

* Updated survey link.

* Added Doxygen RM entry template link.

* Added the "Multi-Thread HDF5" RFC.

* Added DOXYGEN_TAG_FILE.

* Added selection I/O RFC.

* Added the VFD Sub-filing RFC.

* Updated meta-documentation and added two old presentations.

* Added a few more RFCs (4).

* Fixed MANIFEST.

* Updated meta-documentation.

* Added Filters technical note.

* Fixed MANIFEST.

* Restore the path stripper.

* Experimental full-text search via Google.

* Better full-text search integration.

* Whoops. Forgot this one.

* Oh boy.

* Make CMake happy.

* Added "Debugging HDF5 Applications" technical note.

* Another batch of RFCs.

* Fixes for #1221.

* Updated overview.

* Fixed image dependencies.

* CMake updates.

* Fixed SET.

* Better?

* Update doxygen/dox/Overview.dox

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-13 15:13:42 -06:00
Scot Breitenfeld
f859cb732b
Fixed Spelling Errors (#1166)
* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

* Fixed seg fault with xlf on BE with -qintsize=8

* fixed error function string

* spelling corrections via codespell, added new spell check github actions

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* misc

* misc

* misc

* misc

* misc

* Committing clang-format changes

* misc

* work around for https://github.com/codespell-project/codespell/issues/2137

* misc

* added missing file

* misc

* misc.

* misc

* switch to using Codespell with GitHub Actions

* misc.

* misc.

* fixed more sp errors

* Fix new typos found by codespell.

* fixed proceed with precede

* fixed variable in fortran test

* fixed minnum

* updated spelling list

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-12-07 08:27:29 -06:00
Gerd Heber
5c06121976
Closes #1221 (#1223)
* Sketch of the H5S life cycle.

* Committing clang-format changes

* Fix H5S_UNLIMITED snafu.

* Updated RM template and RM page.

* Added H5S life cycle.

* Committing clang-format changes

* Added H5T life cycle.

* Committing clang-format changes

* Cleaner layout (?)

* Cleaned the H5F life cycle. Called out unfinished biz.

* Committing clang-format changes

* Remaining life cycle skeletons.

* Committing clang-format changes

* Committing clang-format changes

* Added H5Z life cycle.

* Committing clang-format changes

* Added H5G life cycle.

* Committing clang-format changes

* H5 and H5I life cycle updates.

* Committing clang-format changes

* Added H5PL life cycle.

* Committing clang-format changes

* Added H5L life cycle.

* Committing clang-format changes

* Fix for Chris' comment.

* Add a variable for Doxygen pre-processor definitions.

* Forgot to add the H5M API.

* Clarify the H5Z life cycle.

* Committing clang-format changes

* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.

* Committing clang-format changes

* Clarified introduction and fixed missing label declaration.

* Added H5O life cycle.

* Committing clang-format changes

* H5O cleanup, part 1.

* Committing clang-format changes

* Cleaned up some of the endless repetition in H5O.

* Committing clang-format changes

* Cookbook & RFC draft layouts.

* Updated manifest.

* Updated the manifest, the example paths, and sketched the 1st recipe.

* Committing clang-format changes

* Outlined two more recipes.

* Committing clang-format changes

* More recipes and RFCs.

* Committing clang-format changes

* Draft of templatized RFC references.

* Another batch of RFC changes.

* Another batch of RFCs.

* Fixed reference.

* RFCs in reverse chronological order.

* First cut of RFCs.

* Fixed reference.

* Updated recipes.

* Updated recipes.

* More RFCs.

* Updated D*PL comments.

* Added H5P descriptions.

* Committing clang-format changes

* H5R life-cycle snapshot.

* Committing clang-format changes

* H5R life-cycle. Added line numbers to life-cycle examples.

* Committing clang-format changes

* Fixed formatting for H5Dchunk_iter().

* Added comment on collective mode requirement w/ compression.

* Simplified API compat. macro dox.

* More API vers. updates.

* Hide the async macro entrails.

* Latest VFD SWMR RFC.

* Create a tag file for permalinks.

* Added TODOs for metadoc.

* Removed duplication.

* Revised RM landing page.

* Trimmed more duplication.

* Committing clang-format changes

* Revised H5D.

* Committing clang-format changes

* Updated survey link.

* Added Doxygen RM entry template link.

* Added the "Multi-Thread HDF5" RFC.

* Added DOXYGEN_TAG_FILE.

* Added selection I/O RFC.

* Added the VFD Sub-filing RFC.

* Updated meta-documentation and added two old presentations.

* Added a few more RFCs (4).

* Fixed MANIFEST.

* Updated meta-documentation.

* Added Filters technical note.

* Fixed MANIFEST.

* Restore the path stripper.

* Experimental full-text search via Google.

* Better full-text search integration.

* Whoops. Forgot this one.

* Oh boy.

* Make CMake happy.

* Added "Debugging HDF5 Applications" technical note.

* Another batch of RFCs.

* Fixes for #1221.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-24 08:32:53 -06:00
Gerd Heber
b9e4deec10
Next batch of Doxygen updates. (#1180)
* Sketch of the H5S life cycle.

* Committing clang-format changes

* Fix H5S_UNLIMITED snafu.

* Updated RM template and RM page.

* Added H5S life cycle.

* Committing clang-format changes

* Added H5T life cycle.

* Committing clang-format changes

* Cleaner layout (?)

* Cleaned the H5F life cycle. Called out unfinished biz.

* Committing clang-format changes

* Remaining life cycle skeletons.

* Committing clang-format changes

* Committing clang-format changes

* Added H5Z life cycle.

* Committing clang-format changes

* Added H5G life cycle.

* Committing clang-format changes

* H5 and H5I life cycle updates.

* Committing clang-format changes

* Added H5PL life cycle.

* Committing clang-format changes

* Added H5L life cycle.

* Committing clang-format changes

* Fix for Chris' comment.

* Add a variable for Doxygen pre-processor definitions.

* Forgot to add the H5M API.

* Clarify the H5Z life cycle.

* Committing clang-format changes

* Add H5Zdevelop.h to Doxygen.in. Added H5I life cycle.

* Committing clang-format changes

* Clarified introduction and fixed missing label declaration.

* Added H5O life cycle.

* Committing clang-format changes

* H5O cleanup, part 1.

* Committing clang-format changes

* Cleaned up some of the endless repetition in H5O.

* Committing clang-format changes

* Cookbook & RFC draft layouts.

* Updated manifest.

* Updated the manifest, the example paths, and sketched the 1st recipe.

* Committing clang-format changes

* Outlined two more recipes.

* Committing clang-format changes

* More recipes and RFCs.

* Committing clang-format changes

* Draft of templatized RFC references.

* Another batch of RFC changes.

* Another batch of RFCs.

* Fixed reference.

* RFCs in reverse chronological order.

* First cut of RFCs.

* Fixed reference.

* Updated recipes.

* Updated recipes.

* More RFCs.

* Updated D*PL comments.

* Added H5P descriptions.

* Committing clang-format changes

* H5R life-cycle snapshot.

* Committing clang-format changes

* H5R life-cycle. Added line numbers to life-cycle examples.

* Committing clang-format changes

* Fixed formatting for H5Dchunk_iter().

* Added comment on collective mode requirement w/ compression.

* Simplified API compat. macro dox.

* More API vers. updates.

* Hide the async macro entrails.

* Latest VFD SWMR RFC.

* Create a tag file for permalinks.

* Added TODOs for metadoc.

* Removed duplication.

* Revised RM landing page.

* Trimmed more duplication.

* Committing clang-format changes

* Revised H5D.

* Committing clang-format changes

* Updated survey link.

* Added Doxygen RM entry template link.

* Added the "Multi-Thread HDF5" RFC.

* Added DOXYGEN_TAG_FILE.

* Added selection I/O RFC.

* Added the VFD Sub-filing RFC.

* Updated meta-documentation and added two old presentations.

* Added a few more RFCs (4).

* Fixed MANIFEST.

* Updated meta-documentation.

* Added Filters technical note.

* Fixed MANIFEST.

* Restore the path stripper.

* Experimental full-text search via Google.

* Better full-text search integration.

* Whoops. Forgot this one.

* Oh boy.

* Make CMake happy.

* Added "Debugging HDF5 Applications" technical note.

* Another batch of RFCs.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-11-23 08:05:40 -06:00
Allen Byrne
b58f8540ac
Fix various warnings and issues in doxygen doc generation (#994)
* Fix various warnings and issues in doxygen doc generation

* Add new file to list
2021-09-10 07:40:27 -05:00
Gerd Heber
cf25524474
A batch of life-cycle examples for different modules (#654)
* Create a tag file for permalinks.

* Added DOXYGEN_TAG_FILE.

* Added Doxygen life-cycle examples for different modules.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-09-01 16:09:27 -05:00
Dana Robinson
f0e0c7ed2a
Fixes parallel issues from recent C99 changes (#809)
* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Even more missed FUNC --> __func__ macros
2021-06-30 10:17:35 -05:00
Allen Byrne
2f79e3f2df
doygen adjustments (#614)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

* Fix perl and doxygen CMake code

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

* Add stamp files to BYPRODUCTS

* Only one copy of file exists

* Fix custom cmmand depends targets

* Fix fortran custom command DEPENDS

* Add LD_LIBRARY_PATH to tests

* Add custom target for DEPENDS

* Add h5detect conditionaly to generated target DEPENDS

* Correct DEPENDS targets

* Parallel builds need the mpi compiler for pkgconfig scripts.

* install only if MPI build

* Fortran target depends

* Remove incorrect source attribute

* doxygen adjustments

* doxygen build updates

* Correct version

* Correct function version - function has been merged to 1.12

* Correct version string for map functions

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-04 17:43:19 -05:00