Commit Graph

753 Commits

Author SHA1 Message Date
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Dana Robinson
72dd01b76b Added a warning summary script for gcc to bin 2019-06-17 13:35:08 -07:00
Larry Knox
3dfc80a28a Moved h5cc.in and h5redeploy.in from tools/misc to bin directory. They
should always be built and installed whether tools are enabled or
disabled.  Also added Makefile.am to bin to build h5redeploy and
to install and uninstall them.  h5cc is created from h5cc.in by
configure.
2019-06-14 10:47:09 -05:00
M. Scot Breitenfeld
6546c764d3 updated -E option 2019-05-10 16:07:12 -05:00
M. Scot Breitenfeld
44fdc3bf96 remove -M option 2019-05-10 15:45:47 -05:00
M. Scot Breitenfeld
19d2cea9ae added -M HPC to ctest command 2019-05-10 14:34:56 -05:00
M. Scot Breitenfeld
cf6f2f039d Adding cross-compilation for theta (ANL) and qsub (COBALT) batch controls. 2019-05-09 16:45:22 -05:00
Larry Knox
df35529e3d Putting ctest command in variable CMD did not work for skipping failing
tests.
2019-05-06 16:38:38 -05:00
Dana Robinson
ff51724bdb Renamed the autotools check-vol target to check-passthrough-vol. 2019-04-11 10:46:22 -07:00
Dana Robinson
32ea4e72f1 Merge branch 'develop' into c_stdlib_posix_call_cleanup 2019-02-19 14:49:20 -08:00
Larry Knox
f69e11efa8 Remove ' ' (typo). 2019-02-16 19:02:44 -06:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
edcbc9966f Refactor parallel test names 2019-02-11 12:01:25 -06:00
Larry Knox
6c2a4b728f Add LOCAL_BATCH_SCRIPT_ARG variable for submitting account information
and other batch command variations with ctest command.
2019-02-04 08:46:57 -06:00
Larry Knox
c348d453b5 Correct H5DIFF to PH5DIFF in *ctestS.sl.in.cmake list of parallel tests
reserved for *ctestP.sl.cmake.
Revise options to run batch tests and alternative options for cross
compile in HPC/*-HDF5options.cmake.
2019-02-02 08:02:48 -06:00
Larry Knox
cc7ce0eb8b Change examples file to zip for CMake zip file. 2019-02-01 12:19:28 -06:00
Larry Knox
eb84f922c8 Update bin/release for filename changes and HPC-CMake tar file
corrections.
2019-02-01 10:21:53 -06:00
Larry Knox
5352bf4971 Add new files to MANIFEST.
Update permissions for raybsub to 755.
2019-02-01 08:57:52 -06:00
Larry Knox
bae744199b Add more specific batch scripts.
Add script raybsub to handle submitting .lsf files on ray with bsub <
script.lsf syntax that we couldn't handle with CMake.
Add hpc-cmake-tgz option for bin/release.
2019-01-31 14:22:52 -06:00
Larry Knox
252beb50b6 Account info can be submitted as an argument to run the batch scripts.
Special versions for sandia are not needed.
2019-01-28 12:52:14 -06:00
Larry Knox
cee36ca40d Remove knl configuration from ctestS.sl.in.cmake.
Add sandia batch files with account info.
2019-01-27 17:55:44 -06:00
Larry Knox
b91cb20c69 Add batch files with batch parameters specific to cori and ray.
Release.txt entry for skipping long double dt_arith tests on ppc64.
2019-01-26 16:44:09 -06:00
Dana Robinson
536a32c59b C and POSIX call cleanup 2019-01-10 17:51:42 -08:00
Larry Knox
25fe692c5c Configure build directory in batch scripts. 2019-01-05 07:49:19 -06:00
Larry Knox
72124031ec Add libhdf5_hl_fortran symlinks for libhdf5hl_fortran files.
Set ctest*.lsf.in.cmake scripts for sierra.
Correct src/CMakelists.txt syntax error.
2018-12-31 09:20:27 -06:00
Larry Knox
126d1e6176 Add .lsf batch scripts and insert the build directory into the scripts
during configuration.
2018-12-28 16:50:48 -06:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
Quincey Koziol
2db4b6df13 Update API tracing info for VOL functions and regenerate trace macros for VOL
API calls.
2018-11-28 10:22:29 -06:00
Quincey Koziol
f9b625ef5d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-21 23:13:04 -06:00
Larry Knox
6cbd463d41 Add script and changes to wait for H5Tinit.c
Add more sample batch scripts, specifically for sbatch, not for knl
cross compile.
Don't run parallel tests when no parallel test script is configured in
HDF5options.cmake.
2018-11-14 11:19:28 -06:00
Quincey Koziol
ca1b9025fe Switch switch remainder of API routines to use VOL callbacks. 2018-11-10 11:54:20 -06:00
Quincey Koziol
ef9ffc630a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-06 10:44:17 -06:00
hdftest
be0d6b206a Update HDF5-Examples version to be included in CMake-* tar/zip files. 2018-11-05 12:40:04 -06:00
Quincey Koziol
deb75622ca Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-04 00:25:36 -05:00
Larry Knox
f031cc7b7a Add script to run tests with sbatch when not cross compiling.
Add new files to MANIFEST.
2018-10-29 16:17:10 -05:00
Larry Knox
b24259ed8c Add files and changes to cross compile with CrayLinuxEnvironment and run
ctest tests with a batch job on knl compute nodes.
2018-10-29 14:24:08 -05:00
Quincey Koziol
50dd616eb5 Correct error with parsing of "FUNC_ENTER_API_NOINIT" 2018-10-27 17:38:32 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Allen Byrne
12adeedf6b HDFFV-10552 fix version script (missed when 1.11 created) 2018-08-16 15:06:29 -05:00
Larry Knox
ac5871c39c Update HDF5 examples to correct version. 2018-07-24 16:10:33 -05:00
Larry Knox
208ff1410d Correct a few typos. 2018-07-24 15:48:29 -05:00
Larry Knox
076ae17a5d Update bine/release to create batch scripts and build-unix-sh, and to
put files in a subdirectory.
2018-07-24 14:47:07 -05:00
Larry Knox
77fa93e07b Add cmakehdf5 command line option to turn on shell script testing.
Option is on by default but can be disabled with --disable-shell-testing.
2018-07-19 09:49:32 -05:00
Allen Byrne
47780cb4e0 TRILAB-31 Working locally 2018-07-16 13:01:53 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
lrknox
725d6cbbf0 Clear RELEASE.txt after HDF5 1.10.2 release
Bring README.txt and INSTALL* updates from hdf5_1_10_2 branch to
hdf5_1_10 branch.
Bring bin/release changes to hdff5_1_10 branch.
2018-04-03 11:54:18 -05:00
M. Scot Breitenfeld
59e7c7703e Merge branch 'develop' into hdf5_1_10 2017-10-26 10:13:33 -05:00
Larry Knox
34a31e7e13 Merge pull request #686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'fded10f0815f593301ac88d08d05343c8077746a':
  Add note to bin/release script with hint for situations where files generated by autogen.sh are missing, causing chkmanifest to fail.
2017-10-05 16:47:46 -05:00
lrknox
fded10f081 Add note to bin/release script with hint for situations where files
generated by autogen.sh are missing, causing chkmanifest to fail.
2017-09-26 09:37:43 -05:00
Allen Byrne
c1afe1c21a Correct VS2017 references 2017-09-05 13:29:59 -05:00
Allen Byrne
073f524247 HDFFV-10284 Add VS2017 support 2017-08-31 13:37:50 -05:00
Dana Robinson
d4234d0a98 Major rework of H5PL package code before bringing VOL changes
over.

Brings coding standards in line with the rest of the library,
enforces better software engineering principles, and makes
everything more maintainable.
2017-07-14 09:18:33 -07:00
Dana Robinson
14bc39bcb5 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 17:10:11 -04:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Dana Robinson
b1a5ba4053 Updated bin/trace to emit errors and reordered autogen.sh processing
so that script failures leave the library in a non-compilable state,
making it harder to ignore errors.
2017-04-25 02:09:55 -04:00
lrknox
49cded79ce Add new files in release_docs to MANIFEST.
Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running
autogen.sh.

Conflicts:
	README.txt
	c++/src/Makefile.in
	fortran/src/Makefile.in
	hl/c++/src/Makefile.in
	hl/fortran/src/Makefile.in
	hl/src/Makefile.in
	java/src/jni/Makefile.in
	release_docs/RELEASE.txt
	src/Makefile.in
2017-04-15 08:17:10 -05:00
lrknox
25ec07450a Change copyright headers to replace url referring to file to be removed
and replace it with new url for COPYING file.

Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
2017-04-14 11:54:16 -05:00
lrknox
00a19eebf0 Update RELEASE.txt Remove "currently under development" from h5vers for
HDF5Config.cmake that causes cmake not to find HDF5.
2017-03-24 13:42:30 -05:00
lrknox
972344e231 Merge bin/h5vers changes from develop.
Pull version from configure for version test in h5repack_plugin.sh.in
Update version to 1.10.2-snap0 for hdf5_1_10 branch.
2017-03-23 20:03:27 -05:00
lrknox
fa5ca5272d Remove extra space added by h5vers to version string in H5.java, which
then failed to match the pattern after the first run.
2017-03-21 11:40:11 -05:00
lrknox
7e7121fec6 Remove incorrect " marks added to java files by bin/h5vers.
Pull version from configure for version test in h5repack_plugin.sh.in
2017-03-21 10:57:40 -05:00
lrknox
cd8ec2cc44 Extend h5vers to update version strings in java files and h5repack
version test expected output file.

Update version on develop branch to 1.11.0.

 Please enter the commit message for your changes. Lines starting
2017-03-20 17:14:16 -05:00
lrknox
98567db192 output_filter.sh:
Comment added to address HDFFV-8270.  The sample ontput in the
        file's comments are not up-to-date with the scripts in the file
        that remove output unique to certain systems when running test
        scripts.  This output doesn't match expected output files for
        the tests, causing them to fail.  Ther output_filter.sh file
        removes such output.  Currently we don't have access to these
        systems to update the comments.

testflushrefresh.sh.in:
        flushrefresh and other SWMR tests have been failing
        occasionally but regularly since bringing them to the develop
        branch.  The logs and debugging point to unexpected deletion of
        signal files as the point of failure, and John Mainzer suggests
        that two such tests running simultaneously in the same directory
        may lead to the operating system deleting the other test's
        signal file. Running the flushrefresh test in its own directory
        seems to solve the problem.
2017-03-15 12:49:19 -05:00
Quincey Koziol
0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
lrknox
be6e9282f6 Make release script fail and return failing exit code when any of the steps for creating the docs.tar file fails. 2017-02-21 16:34:05 -06:00
lrknox
6924e1f9f8 h5vers:
Added code to update version strings in
    config/cmake/scripts/HDF5config.cmake.

release:
    Added options to create CMake tar.gz and zip files containing the
    HDF5 source and scripts to build and test HDF5 with cmake and ctest
    by running a single command.  These were previously assembled
    manually.

    Added a call to h5vers to set the version being released where it
    occurs in files.  In particular, the sub-release version string
    "currently under development" was not being removed from
    cpp_doc_config or HDF5config.cmake.
2017-02-21 15:18:17 -06:00
lrknox
92f4153a86 Resolve missed conflicts. 2017-02-17 15:32:07 -06:00
lrknox
4b0de5860f Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2017-02-17 15:29:41 -06:00
lrknox
a22a9fe733 Remove references to SVN. 2017-02-17 15:16:15 -06:00
lrknox
f37f35245d Check in changes to snapshot script from hdfdts repository to copy in
HDF5 develop branch.  Most of the changes are for the switch from
subversion to it repositories.  This copy is not used for THG daily
tests, but is available for testing on remote machines.
2017-02-13 09:18:12 -06:00
Dana Robinson
422fc7cc9c Whitespace changes in bin/trace. 2017-02-07 14:26:56 -05:00
Quincey Koziol
a28b65bb9e Clean up whitespace 2017-02-07 09:18:57 -08:00
Quincey Koziol
1949d5756d Cache image feature and testing 2017-01-28 23:19:37 -08:00
lrknox
a659d6ed5a AM_MAINTAINER_MODE should be set to "disable" for releases. Check to
see if it's enabled, and if it is, call switch_maint_mode -disable
before creating release files, then set it back to enable afterward.
2016-12-23 13:54:05 -06:00
lrknox
8abd022971 Add --docver option to relesae on develop branch. 2016-12-16 17:04:56 -06:00
Dana Robinson
57a8bb6081 Adds a script to undo the action of autogen.sh. Useful
when git complains about Makefile.in clobbers, etc.
2016-11-08 12:47:36 -05:00
lrknox
db9b0cb100 Translate SVN commands and references to GIT. 2016-10-24 16:27:17 -05:00
lrknox
62232e9120 Translate svn commands and references to git. 2016-10-24 14:17:24 -05:00
lrknox
4a2669d51f Correct typo: add ' ' 2016-10-01 09:47:31 -05:00
lrknox
6cb0d90338 Snapshot release: increment version. 2016-10-01 09:41:26 -05:00
lrknox
03169f5b19 Restrict git commit hash in tar file names to first 7 characters with
--short option.
2016-09-06 13:14:45 -05:00
lrknox
78096ab08a Removed -p option from invocation of autogen.sh by h5vers script to
allow running h5vers on machines without /usr/hdf/bin/AUTOTOOLS.
2016-09-02 15:40:53 -05:00
lrknox
96e9dccf3e dd bin/pkgscrpts directory with scripts to package deployed unix binaries
into tarfiles.
2016-09-02 11:02:10 -05:00
Larry Knox
5372b04bab Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8
* commit '5aee5213190f145b5a734f5dc76a67c82f7d6b82':
  emoved .gitattributes and .gitignore, as the manual migration did not create them. Corrected bbrelease script  to create new release version with revision hash.
  Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository. Removed the -p option from the command to run autogen.sh.  It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh script says the option is for HDF group use only and is likely to be removed.  The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
  Removed the -p option from the command to run autogen.sh.  It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh script says the option is for HDF group use only and is likely to be removed.  The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-31 12:17:06 -05:00
lrknox
b368f0de8d Removed the -p option from the command to run autogen.sh. It interfered
with running chkmanifest on a machine with the correct autotools
versions but without access to /usr/hdf/bin/AUTOTOOLS.  The autogen.sh
script says the option is for HDF group use only and is likely to be
removed.  The same effect can be achieved by adding
/usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
2016-08-30 10:58:12 -05:00
lrknox
ba5652ffc2 Translate svn commands to git commands for chkmanifest and bbrelease
scripts with source in git repository.
2016-08-29 16:42:53 -05:00
Dana Robinson
710d1caf54 [svn-r29531] Normalization w/ revise_chunks in preparation for big merge.
hl and bin directories

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java, Fortran, & C++
2016-03-23 11:50:42 -05:00
Larry Knox
f5234cd194 [svn-r29379] Add individual LT_VERS_* variables for wrapper libraries: c++, fortran, java, hl, hl/c++, hl/fortran to so that the shared object version numbers can be incremented independently.
Disabled auto-increment of shared object version numbers by h5vers.

Files modified:
    config/lt_vers.am
    java/src/jni/Makefile.am
    hl/src/Makefile.am
    hl/c++/src/Makefile.am
    hl/fortran/src/Makefile.am
    c++/src/Makefile.am
    bin/h5vers
    fortran/src/Makefile.am
2016-03-09 13:55:31 -05:00
Larry Knox
d380f20a0d [svn-r29350] Revert h5check_version change to check LT_VERS_XXXX numbers rather than HDF5 library version numbers.
Svn revisions reverted:  29341, 29326
Branch features/h5check_version was created for further development.

Files changed
     test/tcheck_version.c
     test/testcheck_version.sh.in
     src/H5public.h
     src/H5.c
     config/lt_vers.am
     bin/h5vers

Tested with h5committest.new
2016-03-08 12:49:38 -05:00
Albert Cheng
2c36685010 [svn-r29326] HDFFV-9536: Changed H5check_version() to use libtool shared library version numbers instead of the library version numbers.
bin/h5vers: 
    Changed to copy the shared lib version from lt_vers.am to H5public.h
    (Thanks to Larry who made the changes.)
config/lt_vers.am:
    cosmetic change, nothing material.

src/H5public.h:
    Changed by bin/h5vers.

src/H5.c:
    Changed H5check_version() to use shared library version for compatibility
    checking.

test/tcheck_version.c:
test/testcheck_version.sh.in:
    Changed to use shared library version numbers instead of the HDF5 library
    version numbers for testing.

Tested: tested in Jam (C only), platypus and osx1010dev (enable fortran and C++).
2016-03-07 17:03:57 -05:00
Albert Cheng
8ca4c2f44b [svn-r28949] HDFFV-9660: add an option to enable threadsafe feature in cmakehdf5
Tested: platypus.

There are still something strange messages during the configure step.
Waiting for Allen to response.
2016-01-21 17:11:25 -05:00
Dana Robinson
b29d6174e1 [svn-r28881] Merged r28880 from revise_chunks. Adds a script to flip maint mode.
Tested on: linux VM
2016-01-13 11:25:11 -05:00
Albert Cheng
67570ce476 [svn-r28853] HDFFV-9649: cmakehdf5 needs a proper implementation to verify the installation images created for Mac OSX.
The current implementation for Mac OSX platform is a kludge that sometimes left behind mounted volumes.
Temporary screen out the checking of installtion_check step (so that daily test may pass).

Tested: by hand running cmakehdf5 in platypus and osx1010test.
2016-01-11 11:16:38 -05:00
Albert Cheng
74fbe507ae [svn-r28841] indentations were messed up by some previous commit.
Restored them to more readable spacing. No code change.

Test: visual inspection.
2016-01-07 15:27:37 -05:00
Dana Robinson
064b2f6dd8 [svn-r28788] Added extern C block to H5Epubgen.h (via bin/make_err).
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2016-01-04 12:21:05 -05:00
Albert Cheng
322816c966 [svn-r28638] HDFFV-9273: cmakehdf5 --script failed in linux platypus
Solution: remove --script option from cmakehdf5.

Tested: platypus
2015-12-14 12:42:26 -05:00
Dana Robinson
fe938a0d71 [svn-r28565] Normalization of bin/trace with revise_chunks in preparation
for merge.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64)
           bin/trace run only
2015-12-10 20:09:28 -05:00
Albert Cheng
bb2cdb9283 [svn-r28563] HDFFV-9612: added ability to run multiple make commands.
Added --njobs option to special number of jobs (-j N) to allow multiple
commands during build (cmamke) and testing (ctest).

Tested: platypus.
2015-12-10 18:01:27 -05:00