them H5D calls.
* Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*.
* Moved the hl/test/test_dset_opt test to test/ and renamed to
direct_chunk.
* Moved the hl/test/dectris_hl_perf test to tools/test/perform
and renamed to direct_write_perf.
* Updated autotools and CMake files.
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* commit '089afc48561ba8838d6a515c6b00fc6f7032ca13':
Updated the developer flags so that they respect gcc versions.
Description: Added data files from the packet table vlen tests to the CHECK_CLEANFILES list. Platforms tested: Linux/64 (jelly)
- Removed calls to H5Tget_native_type in the PT code. The application would
need to do that if desired.
- Added Abhi's program to tests to verify the fix.
- This fix might have fixed HDFFV-9927, HDFFV-9042, and the issue reported
by Barbara Jones from Ametek as well.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (jelly)
Darwin (osx1010test)
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
More warning cleanups. This brings us down to ~1300 warnings in 167 files
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Bring object/dataset/group/named datatype features from revise_chunks
branch to trunk. Also CMake support for h5format_convert and a bunch of
misc. cleanups.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring H5LD* routines from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk. Brings along updated metadata cache
entry tagging, and the internal object flush routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Description:
Added several tests for packet table that were missing from the
previous update.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Description:
The Packet Table API used to have fixed-length and variable-length functions
(i.e., H5PTcreate_fl and H5PTcreate_vl), but in 2006, the vlen functions
were ifdef'ed out with VLPT_REMOVED, see HDFFV-442. The majority of this
revision includes removing unused vlen stuff, adding various vlen tests,
initial code cleanup, and first pass of commenting.
Details:
- Removed the VLPT_REMOVED ifdef, but keep H5PTis_varlen and the free
function because they are useful or even needed, but the free
function's name is changed to be more appropriate for both
read/write buffers, i.e., H5PTfree_vlen_buff.
- The new test file, test_packet_vlen.c, contains tests showing packet
tables, containing various types of vlen data, can be created with
the fixed-length function
- Two accessor functions were added per HDFFV-8623/patch 003.
/* Returns the ID of the dataset associated with the packet table */
hid_t H5PTget_dataset(hid_t table_id);
/* Returns the ID of the datatype the packet table uses */
hid_t H5PTget_type(hid_t table_id);
- Various cleanup: replacing 0/-1 with SUCCEED/FAIL and H5I_BADID with
H5I_INVALID_HID, and removing many warnings.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
Tested w/ h5committest
NOTES: - The manifest may still be messed up.
- Cmake fails since the dual binary work needs to be merged with
this repo's CMake externals.
- Adds 'F' suffixes for most float constants.
- A few constants MUST be of type double. These now receive the long
double L suffix and are then cast to double. I do this via a new
H5_DOUBLE() macro which was added to H5private.h.
Fixes: HDFFV-9148
Tested on: h5committest
branch.
Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).
This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.
Part of: HDFFV-9086
Tested on: h5committest
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.
tested with h5committest.
Developers will now have to run bin/reconfigure (deprecated, will be removed
soon) or autogen.sh after checking out code.
Part of: HDFFV-9120
Tested on: jam with Fortran and C++
Change AC_TRY_RUN TO AC_TRY_COMPILE
Changed all the instances of AC_TRY_RUN for the Fortran and C++ tests to use
AC_COMPILE_IFELSE and moved all the tests to new files in m4 directory:
aclocal_cxx.m4 (for C++ tests)
aclocal_fc.m4 (for Fortran tests)
tested: jam
Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups
that aren't on the branch)
Tested on:
Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
(h5committested on branch already for a week)
Bring changes from hdf5_1_8_coverity branch back to trunk:
r20878:
Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check.
r20880:
Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom.
r20882:
Fixes for coverity:
1) bug #1679: remove dead code in test/mf.c
2) bug #1680: remove dead code in tools/lib/h5diff_dset.c
r20883:
Fix coverity issue 585
Description:
Changed variable "c" in processStrData in h5import.c to an int, to match fgetc
return value, and removed call to feof, instead checking if c == EOF.
Tested on:
MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel
(too minor to require h5committest)
ib files. The fix also removed dependencies on libhdf5, etc. when the --disable-sharedlib-rpath co
nfigure option was invoked.
Added instead configure variable hardcode_into_lib=no. This removes rpath from lib files on Linux
and solaris machines.
Tested with h5committest on jam, koala, ostrich and platypus (cmake), and with configure option --disable-sharedlib-rpath on emu, platypus and quail.
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.
Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551
Tested on:
64-bit Windows 7 w/ VS2012
32-bit LE linux w/ parallel and fortran (jam)
32-bit LE linux w/ fortran and C++ (jam)
