Commit Graph

56 Commits

Author SHA1 Message Date
Alessandro Felder
8e06298ecf
Add high-level set/get for unsigned long long attributes. (#973)
* add ULL attr set/get signatures to LT public API

* add LT implementation of ULL set/get attribute

* fix copy-paste typo in test comment

* add ULL test data

* define ullong attr name global variable

* add LT tests for ULL attr set/get

* Committing clang-format changes

* correct type passed to lt get attr test for ULL

* update RELEASE.txt with added ULL set/get functionality

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-09-08 15:53:15 -05:00
Sean McBride
d7b40604ef
Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-03-10 12:42:35 -06:00
Larry Knox
2ea165efd0
Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
Allen Byrne
b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Dana Robinson
5ce2a17804 Removes staff email addresses from the repository
Removes redundant C library headers from hl library
2020-08-06 17:58:07 -07:00
Allen Byrne
96bf97f534 Update HD prefix and reconcile hl/cpp test 2019-08-16 13:23:29 -05:00
Allen Byrne
27af9a7922 HD prefix and whitespace 2018-08-28 10:54:54 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Scot Breitenfeld
e45885dea9 [svn-r29603] HDFFV-9746 Add test for "/" for H5LTpath_valid
Tested: jam (gnu)
2016-04-01 16:30:24 -05:00
Mohamad Chaarawi
3444e46ea0 [svn-r28017] mem leak fix. 2015-10-09 15:25:50 -05:00
Dana Robinson
cc0165a973 [svn-r27799] Minor warning fixes in the high-level library.
Tested on: jam (too minor for h5committest)
2015-09-16 05:34:25 -05:00
Quincey Koziol
adbb64c6cd [svn-r27204] Description:
Clean up compiler warnings before merging in v3 metadata cache changes
from branch.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-15 11:07:38 -05:00
Scot Breitenfeld
04a3b2a458 [svn-r26417] Removed compiler warnings from HL. HDF5-237
Tested: h5committest
2015-03-10 14:02:41 -05:00
Scot Breitenfeld
48d9c30923 [svn-r26294] Fix for HDFFV-9132.
tested: h5committest
2015-02-24 15:30:07 -05:00
Scot Breitenfeld
17893b24ea [svn-r25629] Fix for hdffv-8855. 2014-09-29 10:31:40 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Quincey Koziol
308c378ccd [svn-r24020] Description:
Clean up compiler warnings

Tested on:
    Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-08-17 15:05:27 -05:00
Jerome Soumagne
345e57b0b1 [svn-r23985] Merge commit 23937 from reduce_warning branch
Remove unused param (src) and unused var (hl) warnings

Tested on koala
2013-08-09 16:06:46 -05:00
Raymond Lu
b7041a91cd [svn-r23017] I added a prototype function H5DOwrite_chunk in HL library for Dectris people to test performance. The library's API function H5PSIdirect_write
is still in.  I reorganized the internal library by adding H5D__pre_write function.

Tested on koala.
2012-11-07 12:08:46 -05:00
Raymond Lu
0cf58a4755 [svn-r22987] ported revisions from 22742 to 22986 from the trunk 2012-10-29 13:59:05 -05:00
Allen Byrne
eb5b8163f9 [svn-r22411] reduce compiler warnings by removing unreferenced variables and adding cast
Tested: local linux
2012-05-25 12:39:07 -05:00
Scot Breitenfeld
5e202882c9 [svn-r22096] Desciption: Added cyclic path test for H5LTpath_valid.
Tested: jam (gnu and intel)
2012-03-19 23:23:10 -05:00
Scot Breitenfeld
18a18f7f10 [svn-r22082] Description: replaced strncopy with passing path name directly. 2012-03-16 10:13:46 -05:00
Scot Breitenfeld
e37a9c67d8 [svn-r22081] Description:
Changed H5G*() to H5G*2() APIs for compatability.

Tested: (jam intel, --with-default-api-version=v16)
2012-03-16 09:54:18 -05:00
Scot Breitenfeld
29e7e2890b [svn-r22078] New API: H5ltpath_valid
REF: HDFFV-1233

A high-level "H5LTpath_valid" routine for checking if a path is correct
Both Fortran and C version.

Tested: jam (gnu and intel)
2012-03-15 19:53:56 -05:00
Allen Byrne
058f9c2056 [svn-r22024] Add HD prefix to tools library based tests. Cleaned allocation/free in tests.
Tested: local linux/ changes h5committetest against 1.8 version
2012-03-05 09:17:14 -05:00
Raymond Lu
b7f8909a58 [svn-r21436] Issue 7701 - H5LTdtype_to_text had memory corruption while being querried about the size of the buffer needed. The problem happened when the internal buffer is reallocated, the new address got lost. I revised the code to pass the new address as the return value of functions. I also added two new test cases.
Tested on jam, linew, and koala.
2011-09-30 10:51:15 -05:00
Quincey Koziol
b9ca2f8f6f [svn-r18650] Description:
Bring back various minor tweaks & cleanups from the revise_chunks
branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2010-04-27 17:15:14 -05:00
Quincey Koziol
1809f040c9 [svn-r18419] Description:
Clean up srcdir querying code more, extracting it into single header file,
to avoid compiler warnings.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug & prod
    Linux/32 2.6 (jam)
2010-03-18 07:23:04 -05:00
Quincey Koziol
fd547cd11f [svn-r18413] Description:
Unify srcdir handling for test executables and allow them to use the srcdir
setting from configure time without requiring the 'srcdir' environment variable
be set (although you still can, to override the built in setting).  Attempted
to get this right for Windows builds also.

    Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so
that the test/testcheck_version.sh script works correctly.

Tested on:
    Linux/32 2.6 (jam)
    Mac OS X/32 10.6.2 (amazon)
2010-03-17 16:38:20 -05:00
Quincey Koziol
fd70b2afa8 [svn-r18197] Description:
Trim trailing whitespace from source code files with this command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:29:13 -05:00
Quincey Koziol
bb25c85e79 [svn-r18159] Description:
Bring Coverity fixes from 1/22/10 session to trunk:

r18137:
219: Initialized hid_t to -1 and added close to error block.
189-191: Initialized line to NULL and added free line, and close fp to error block.

r18138:
19: Moved code block for printing that the number of enums is empty to the error block. (Would never have been executed otherwise)

r18139:
Fix coverity item 58.  Moved code related to displaying the parent of a repeated
group to the else(isRoot) section, as the root group has no parent.

r18140:
218: Initialized ret_value variable to -1. Because of throw Exception in default case of switch, the coverity problem would not have executed anyway. Good pratice is to initialize variables.

r18141:
Fix coverity item 92.  Added code to H5E_register_class to free cls in case of
an error.

r18142:
Fix coverity item 91.  Added code to H5E_create_msg to free msg in case of an
error.

r18143:
fixed issue 14,
took away "if" and used #ifndef_xxx.

r18144:
Fix coverity item 110.   Added code to H5Eget_minor to free msg_str in case of
an error.

r18145:
fixed coverity #18 removed "aligned", it is always NULL.

r18146:
Fix coverity item 109.   Added code to H5Eget_major to free msg_str in case of
an error.

r18147:
Fixed coverity #81 and #82, Check for bad pointer(s), but can't issue error, just leave

r18148:
Fix coverity item 97.   Added code to H5FD_fapl_open to free copied_driver_info
in case of an error.

r18149:
Fix coverity item 96.   Added code to H5FD_dxpl_open to free copied_driver_info
in case of an error.

r18150:
Fix Coverity issue #29: Protected cache_ptr dereferences with "if(pass)"
block

r18151:
Fix coverity item 93.   Added code to H5FL_fac_init to free factory and new_node
in case of an error.

r18152:
Fix coverity items 98 and 99.   Added code free allocated space in case of
error.

r18155:
124: Freed head pointer before jumping to done. There was no error handling block and normal exit used same path out.
120-123: Freed list of lists in error handling block.

r18156:
Fix coverity issues 179, 180, 181, 182, 183, 184, 186, 320, 407.  These were resource leak issues where allocated memory was not freed, generally in the case of tests that failed.

Tested on:
    Mac OS X/32 10.6.2 (amazon) debug & production
2010-01-23 02:00:00 -05:00
Raymond Lu
71b49b0f9b [svn-r16880] Fixed a bug in H5LTtext_to_dtype. When the data type is enumerate and the super type is different from
the native integer, the value wasn't converted.  I fixed it and corrected the test, too.

Tested with h5committest.
2009-04-28 16:42:33 -05:00
Raymond Lu
cdcd4a7305 [svn-r16859] I fixed some memory leak of H5LTdtype_to_text in the HL library. I fixed some test
verification, too.

Tested on jam - simple change.
2009-04-24 16:13:20 -05:00
Pedro Vicente Nunes
c8f6207556 [svn-r16719] clean linux warnings
tested: linux
2009-04-09 14:56:54 -05:00
Quincey Koziol
a5984f59f7 [svn-r14212] Description:
Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the
"perm" parameter from the '2' versions.

	Shift internal library usage to '2' versions.

	Add simple regression tests for '1' versions.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-18 17:02:19 -05:00
Quincey Koziol
d9e5ca72f3 [svn-r14199] Description:
Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2

	Fix thread-safe error stack initialization for API versioned error
stack printing routines.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-11 11:24:11 -05:00
Quincey Koziol
16683943c6 [svn-r14193] Description:
Make H5Dopen versioned and change all internal usage to use H5Dopen2

	Add simple regression test for H5Dopen1

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-08 14:59:36 -05:00
Quincey Koziol
63eb5b9ebb [svn-r14104] Description:
Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments.  ;-)

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
2007-08-23 15:25:25 -05:00
Albert Cheng
ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice.
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00
Quincey Koziol
25d1056dbf [svn-r12734] Description:
Clean up some compiler warnings.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/enable-1.6-compat
2006-10-08 22:51:03 -05:00
Quincey Koziol
7be3afb278 [svn-r12440] Purpose:
Code cleanup

Description:
    Trim trailing whitespace in Makefile.am and C/C++ source files to make
diffing changes easier.

Platforms tested:
    None necessary, whitespace only change
2006-06-27 09:45:06 -05:00
Raymond Lu
0f98d2009b [svn-r12351] Purpose: Follow-up what's committed yesterday.
Description: Yesterday, a definition of the macro YY_BUF_SIZE of 256KB
was committed in, but copper complained it can't be redefined.

Solution: Added #ifdef and #undef to make sure the macro is undefined
first.  Also integrated a complicated compound type test.  It reads
input from a text file.  The datatype is unusually large, of 101 member
fields.

Platforms tested: h5committest and fuss.
2006-05-17 13:09:12 -05:00
Quincey Koziol
cc5b2ff93b [svn-r12314] Purpose:
Code cleanup

Description:
    Big clean up on high-level library code, including:
        - Removing include of HDF5 private header file(!)
        - Reduce number of compiler warnings
        - Untangle header files, etc.

Platforms tested:
    FreeBSD 4.11 (sleipnir) w/C++
    Linux 2.4/64 (mir) w/C++ & FORTRAN
2006-04-29 01:20:50 -05:00
Pedro Vicente Nunes
bc66efc788 [svn-r12229] Purpose:
new feature

Description:
1) separated the HL library into "public" and "private" header files, with the same caracteristics as the basic library
2) added the public headers to hdf5.h (with a conditional include macro, defined in configure.in)
3) added the path to HL in all Makefile.am 's , because of the inclusion in hdf5.h

Solution:

Platforms tested:
linux 32, 64
AIX
solaris
with fortran and c++

(one packet table example fails)

Misc. update:
2006-04-12 16:21:38 -05:00
Raymond Lu
da37fca10b [svn-r11882] Purpose: Revision
Description: Revise a few details of H5LTtext_to_dtype() and H5LTdtype_to_text(),
1. changed the DDL definition of string, opaque, and compound types.
2. added a new parameter of H5LT_lang_t type to these two functions.


Platforms tested: h5committest and fuss.
2006-01-16 12:27:07 -05:00
Raymond Lu
617d2704c4 [svn-r11832] Purpose: Rename files and change grammar rule.
Description: Renamed lex.yy.c to H5LTanalyze.c, y.tab.c to H5LTparse.c, and
y.tab.h to H5LTparse.h in hl/src.  Changed definition of opaque type to ommit the tag.
Changed the test for opaque type in hl/test, too.


Platforms tested: h5committest, fuss, and sleipnir.

Misc. update: MANIFEST
2005-12-22 17:27:17 -05:00
Raymond Lu
29ed3345e1 [svn-r11830] Purpose: A new function and its test.
Description: This is the second step of conversion between data type and
text, H5LTdtype_to_text().

Solution: Similar to h5dump, this function print the DDL description of
a data type into a string.

Platforms tested: h5committest and fuss.
2005-12-21 16:25:38 -05:00
Quincey Koziol
88c15b1617 [svn-r11771] Purpose:
Code cleanup

Description:
    Fix a bunch of warnings flagged by Windows compilers.


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-12-08 13:34:51 -05:00
Raymond Lu
370d940cd0 [svn-r11689] Purpose: Bug fix
Description: The g++ on sleipnir had troubles to compile the H5LTtext_to_dtype()
code.

Solution: Fixed problems at different places.

Platforms tested: h5committest and g++ on sleipnir.
2005-11-07 17:14:02 -05:00