* Enable usage of new-style references with dimension scale APIs
* Add API to check if an object ID represents a native connector object
* Modified code to use new function H5DSwith_new_ref to determine if new references should be used with
Dimension Scales. The new function return TRUE if non-native connector is used or if H5_DIMENSION_SCALES_WITH_NEW_REF
varible is define at configure time (--enable-dimension-scales-with-new-ref).
Tested on jelly.
ToDo: generate testing file on BE system and enable the test; add flag to CMake; test netCDF-4 with the new references.
* Adding new test files generated on BE system (hedgehog) created by 32 and 64-bit library.
test_ds chokes on test_ds_le_new_ref.h5 on BE system; test passes for test_ds_be_new_ref-32bit.h5
for the 32-bit library and fails for the 64-bit library, and vice versa. I am checking the files for further
investigation; but current implementation of the new references is not portable between LE and BE systems,
and 32 and 64-bit systems.
* Minor fixes for testing issues
* Update test_ds.c
Enabled broken test; tests pass now.
* Update RELEASE.txt
Documented new option to use new references with the HDF5 dimension scales APIs (H5DS*).
* Update MANIFEST for new 32-bit new-style references test file for H5DS APIs
* Update 'dimension scales w/ new-style refs' feature based on review
Co-authored-by: Elena <epourmal@hdfgroup.org>
* add ULL attr set/get signatures to LT public API
* add LT implementation of ULL set/get attribute
* fix copy-paste typo in test comment
* add ULL test data
* define ullong attr name global variable
* add LT tests for ULL attr set/get
* Committing clang-format changes
* correct type passed to lt get attr test for ULL
* update RELEASE.txt with added ULL set/get functionality
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Pacify clang-analyzer-unix.cstring.NullArg
* Apply some bugprone-suspicious-string-compare
* Apply some readability-simplify-boolean-expr
* Apply some readability-make-member-function-const
* Apple some bugprone-macro-parentheses
* Changed an f suffix to L for `long double`
* Applied some readability-uppercase-literal-suffix automatically
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Cleans up POSIX/C bits in H5private.h
* Assume difftime exists (C89)
* Reorg AC_CHECK_HEADERS so headers are in alphabetical order
* Split off networking-related AC_CHECK_HEADERS
* Remove unused UNAME_CYGWIN from configure.ac
* Remove checks for unused sys/timeb.h
* Tidying pass over H5private.h HD prefix macros
* Tidy H5win32defs.h
* Add HD prefix to various scanf calls
* Committing clang-format changes
* Fixes to the alarm(2) code used in the tests to make Windows happy
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed use of null pointer identified by UBSan
UBSan warned:
runtime error: member access within null pointer of type 'named_dt_t' (aka 'struct named_dt_t')
with these two tests:
H5REPACK-committed_dt_DFF
H5REPACK-committed_dt
Reformulated per @gnuoyd suggestion.
* Fixed undefined float -> unsigned char conversion in HL_test_image
* Removed dead skip_overflow_tests_g global
The global `skip_overflow_tests_g` was being set but never read.
* Don't treat 2d array as 1d array, fixing UBSan complaint in `CPP_testhdf5`
* Committing clang-format changes
* Remove extra ']' in line 730.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING (license) file.
* Add release_docs/code-conventions.md file.
* Add script to test h5py.
* Fix script error.
* Add file h5pytest.yml.
* Test declaration of counter variables in for loops.
* Committing clang-format changes
* Committing clang-format changes
* Added [] to line 126 of H5LTanalyze.l.
Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly.
* Revert "Added [] to line 126 of H5LTanalyze.l."
This reverts commit e4a9cee441.
* Revert extra commits to match canonical develop.
* Update top-level COPYING file and remove COPYING files from
subdirectories.
* Remove subdirectory COPYING files from MANIFEST.
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Update clang config to put H5E_BEGIN_TRY / H5E_END_TRY on separate lines, empty C++ methods on separate lines, understand that ALL_MEMBERS / UNIQUE_MEMBERS are foreach macros, and properly skip the 'config' directory in the find command without emiting a warning
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings
This change was generated entirely by clang-tidy itself.
* Reformat code with clang v10.0.1.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes
Removes useless const declarations.
* Fixed most readability-non-const-parameter warnings
These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.
* Reformat source with clang v10.0.1.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fixed -Wunused-local-typedef warning
* Fixed -Wformat warnings
In one case also removed a `z` character. There was a `z%d` that I think was supposed to be `%zd`
* Fixed -Wshorten-64-to-32 warnings
* Fixed -Wself-assign warnings
* Fixed -Wreserved-id-macro warnings
* Commit format changes from clang-format, clang version 10.0.1.
* Fixed -Wself-assign warnings
* Fixed -Wunused-local-typedef warning
* Fixed -Wformat warnings
In two cases also removed a `z` character. There was a `z%d` that was supposed to be `%zd`.
* Fixed -Wshorten-64-to-32 warnings
* Fixed -Wreserved-id-macro warnings
* Fixed -Wself-assign warnings
* Format source.
* Remove blank lines to pass format check.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling
Removed leading underscore(s) from header guard spelling. Used 2 regexes:
` _H5(.*)_H`
` __H5(.*)_H`
Applied case-insensitively to only .h files.
* Modified scripts that generate header files to not use underscore prefix
Interestingly, there was already no leading underscore in the trailing comment at the end of the file
* Fixed remaining -Wreserved-id-macro warning not caught by regex
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - files not in src or test.
* OESS-98 convert plugin option to FetchContent, add tests
* Fixes for pkcfg files because of plugin option
* OESS-98 fix tools test for plugins
* Keep doxygen comments under 100 chars long - format hint
* Whitespace
* HDFFV-11144 - Reclassify CMake messages
* HDFFV-11099/11100 added help text
* Reworked switch statement to compare string instead
* Fix typo
* Update CDash mode
* Correct name of threadsafe
* Correct option name
* Undo accidental commit
* Note LLVM 10 to 11 format default changes
* Update format plugin
* Undo clang-format version 11 changes
* One more correction
* Update supported platforms
* Revert whitespace changes
* Correct whitespace
* Changes from PR#3
* commit '1da9c5545c013ebc540ba3044810889d4acfa5be':
Restored some unused #defines to the deprecated section of H5Dpublic.h.
Added deprecated symbol wrappers for the H5DOwrite/read_chunk wrappers.
Updated commenting in the H5DO compat test.
Stripped out most of the duplicated functionality in the H5DO compat test.
* Added H5DO compatibility functions. * Changed the offset copy to use an array on the stack. * Yanked some unused #defines.
* Fixed the error tests * Moved common functionality into helper functions
Normalize with trunk prior to update merge
Fixed a warning.
Finished move of H5DOread/write_chunk calls to H5D.
First stage of moving H5DOread/write_chunk() to src/ and making them H5D calls. * Moved H5DOread/write_chunk() to H5Dio.c and renamed to H5D*. * Moved the hl/test/test_dset_opt test to test/ and renamed to direct_chunk. * Moved the hl/test/dectris_hl_perf test to tools/test/perform and renamed to direct_write_perf. * Updated autotools and CMake files.
