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Author SHA1 Message Date
Allen Byrne
9cdf806eec [svn-r26383] Add MAPPING to VDS output 2015-03-06 12:53:56 -05:00
Elena Pourmal
802fac804d [svn-r26376] Added new examples for fixed-size Excalibur and for Eiger use cases. Fixed several typos. 
Tested on jam.
 2015-03-05 18:04:57 -05:00
Allen Byrne
b3c3c8ea72 [svn-r26361] Added check for unlimited to count/block print selection 2015-03-04 14:14:50 -05:00
Elena Pourmal
e2175fd0ca [svn-r26360] Modified CMake files to accomodate new h5_vds-exc.c example. 2015-03-04 12:29:29 -05:00
Elena Pourmal
3c9c263e5a [svn-r26359] Added h5_vds-exc.c to misc. files and ran bin/reconfigure. 
Tested on jam.
 2015-03-04 12:26:33 -05:00
Elena Pourmal
026cf21de8 [svn-r26357] Added mapping example for the Excalibur detector use case. 2015-03-04 12:03:32 -05:00
Allen Byrne
1aa5cd4fa5 [svn-r26353] Add VDS selection defines for ALL and NONE 2015-03-04 09:08:58 -05:00
Allen Byrne
f1c4d0ff3f [svn-r26352] Update h5dump to latest BNF - reg vs irreg hyperslabs. 2015-03-04 08:34:24 -05:00
Neil Fortner
79771d3fac [svn-r26346] Add more test cases, refactor test code to reduce code duplication. Minor 
fixes in src.
Note make check still fails in h5ls test.

Tested: ummon
 2015-03-03 12:32:22 -05:00
Elena Pourmal
56f7406671 [svn-r26343] Improved output. 2015-03-02 16:34:39 -05:00
Elena Pourmal
a726992cd8 [svn-r26342] Added usage of the new H5S*_regular_hyperslab functions. 
Tested on jam.
 2015-03-02 16:32:27 -05:00
Allen Byrne
45df14138d [svn-r26318] Update virtual layout to latest changes 2015-02-26 10:59:15 -05:00
Neil Fortner
952d00e7f0 [svn-r26306] Merge r26296 through 26304 from trunk to vds branch. 
It should no longer be necessary to use --enable-using-memchecker
make check fails due to an issue with h5ls apparently unrelated to the merge

Tested: ummon
 2015-02-25 17:06:18 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Quincey Koziol
3550004b20 [svn-r26302] Description: 
Revise dataspace encode/decode routines to make them work better with
future virtual dataset feature.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 13:03:52 -05:00
Quincey Koziol
0ce8fddc73 [svn-r26301] Description: 
Bring Neil's fix for error in H5S_extent_copy() back to the trunk.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 12:29:30 -05:00
Quincey Koziol
2dae075569 [svn-r26300] Description: 
Add H5Sis_regular_hyperslab() and H5Sget_regular_hyperslab() API routines,
along with tests.

Tested on:
    Mac OSX/64 10.10.2 (amazon) w/serial
    (h5committest forthcoming)
 2015-02-25 12:05:16 -05:00
Elena Pourmal
99a3f4d8d4 [svn-r26297] Changed example and h5dump according to suggestions at today's code review VDS-176. 
BNF has been updated too. Now h5dump displays VDS like this:

HDF5 "vds.h5" {
GROUP "/" {
   DATASET "VDS" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 4, 6 ) / ( 4, 6 ) }
      STORAGE_LAYOUT {
         VIRTUAL {
             HYPERSLAB { (0,0)-(0,5) };
             a.h5;
             A;
             ALL;
             HYPERSLAB { (1,0)-(1,5) };
             b.h5;
             B;
             ALL;
             HYPERSLAB { (2,0)-(2,5) };
             c.h5;
             C;
             ALL;
            }
         }
      }
      FILTERS {
.......
I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow.

Tested on jam
 2015-02-24 23:19:41 -05:00
Neil Fortner
2ca5b16a9f [svn-r26296] Merge r26050 through 26295 from trunk to vds branch. 
Tested: ummon
 2015-02-24 16:53:56 -05:00
Allen Byrne
3f72ec11cd [svn-r26295] add space before end bracket of selection 2015-02-24 15:39:08 -05:00
Scot Breitenfeld
48d9c30923 [svn-r26294] Fix for HDFFV-9132. 
tested: h5committest
 2015-02-24 15:30:07 -05:00
Neil Fortner
2811133914 [svn-r26293] Implement patching of virtual dataspace extent in mapping dataspaces when 
opening virtual dataset.  Add tests for this.

Tested: ummon
 2015-02-24 14:54:48 -05:00
Allen Byrne
80e77e7d77 [svn-r26290] Add H5S prefix to selection name 2015-02-23 16:52:03 -05:00
Allen Byrne
bc888966a9 [svn-r26288] remove extra set of brackets 2015-02-23 15:30:53 -05:00
Allen Byrne
b1251c915e [svn-r26287] Rename point and block str functions generically. 
Add info arg to print virtual selection function.
 2015-02-23 15:23:56 -05:00
Allen Byrne
a0ead57cad [svn-r26286] Print selection types - no values 2015-02-23 14:19:19 -05:00
Allen Byrne
cd9b96a887 [svn-r26285] add virtual mapping output blank selections but actual file and dataset names. 2015-02-23 13:41:02 -05:00
Allen Byrne
46074defaa [svn-r26284] Add VIRTUAL layout to h5dump - still need a tools testfile created 2015-02-23 12:07:40 -05:00
Allen Byrne
8e48921d90 [svn-r26283] Correct test folder handling (merge from trunk) 2015-02-23 11:54:39 -05:00
Allen Byrne
c5da9e3270 [svn-r26282] Update source file list and test list 2015-02-23 11:20:53 -05:00
Scot Breitenfeld
e171ee01f1 [svn-r26280] Removed tab indenting for Fortran source, tab indenting is not F2003 standard compliant. 2015-02-23 10:58:12 -05:00
Mohamad Chaarawi
0c29ac42cd [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of functions to work with v16 default API. 2015-02-23 10:14:43 -05:00
Allen Byrne
f175fd25c8 [svn-r26277] remove filename extension 2015-02-23 08:54:40 -05:00
Dana Robinson
7e220930da [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch. 
Cleans up time functions in the autotools input files. Removed deprecated
gettimeofday() time zone code and configure processing. Also removed
some unused time function configure checks and defines.

Fixes: HDFFV-9083 and HDFFV-9085

Tested on: 32-bit linux, serial and parallel (jam)
           OS X (kite)
           Solaris (emu)
 2015-02-23 01:56:16 -05:00
Dana Robinson
7c13406814 [svn-r26275] Merge of r26042, 26083, 26084, 26085 from features/autotools_rework 
- Updated configure.ac so that the direct VFD can now be built
  without specifying _GNU_SOURCE, etc. on the command line.

- The direct VFD is now disabled by default. It was previously
  enabled, but the configuration script couldn't configure it
  properly, making it a moot point.

Fixes: HDFFV-9057, HDFFV-7567, HDFFV-9088, HDFFV-7566

Tested on: h5committest
           jam w/ direct VFD (*very* slow!)

NOTE: platypus cmake fails, but this is not a new error.
 2015-02-22 10:09:26 -05:00
Dana Robinson
bfc0395507 [svn-r26272] Merge of r26071 from features/autotools_rework 
Removes the --with-default-vfd option from configure. This was basically
useless and only allowed selecting the stdio VFD. Since this is a demo
VFD and not really a production VFD, we decided to retire this option.

Fixes: HDFFV-9081

Tested on: h5committest

NOTE: platypus cmake fails, but this is not a new error.
 2015-02-22 05:44:41 -05:00
Dana Robinson
f634105bdb [svn-r26271] Reverse merge of r26260 which was causing daily test failures. 
Tested on: jam w/ parallel and fortran
 2015-02-22 03:38:18 -05:00
Elena Pourmal
7556f179c3 [svn-r26269] Minor cleanup in the comments. 2015-02-21 22:38:00 -05:00
Elena Pourmal
7881deb15e [svn-r26268] Added VDS example. 
I ran bin/reconfigure on jam and it modified test/Makefile.in. May be Neil fixed Makefile.am,
but didn't run reconfigure?

Tested on jam.
 2015-02-21 22:26:08 -05:00
Neil Fortner
88b7d8d34c [svn-r26261] Commit working but incomplete prototype. Does not perform I/O. 
Tested: ummon
 2015-02-20 16:53:35 -05:00
Mohamad Chaarawi
fcd77ffe7e [svn-r26260] - add an attribute callback to call H5_term_library when MPI_COMM_SELF is destroyed. 
- add tests for above.
- this is a fix for HDFFV-883.

tested h5committest
 2015-02-20 16:33:48 -05:00
Allen Byrne
734f168225 [svn-r26259] Remove file 2015-02-20 15:52:56 -05:00
Allen Byrne
fef1ffe690 [svn-r26256] Remove file - obsoleted by cmake 3.1 minimum 2015-02-20 14:01:32 -05:00
Allen Byrne
42a97ddeff [svn-r26255] Remove file - obsoleted by cmake 3.1 minimum 2015-02-20 14:01:19 -05:00
Scot Breitenfeld
57a1c0b93b [svn-r26254] Changed mpi test to use include 'mpif.h' 2015-02-20 13:30:47 -05:00
Allen Byrne
f679b9006d [svn-r26253] Update CMake with fortran source properties and defines, correct name of hl fortran examples option check 2015-02-20 12:25:56 -05:00
Dana Robinson
54a36600c0 [svn-r26249] Removed warnings about NO TRACE from bin/trace script. 
Fixes: HDFFV-9098

Tested on: jam (bin/trace only - causes no source changes)
 2015-02-20 09:48:18 -05:00
Scot Breitenfeld
6ce3158da7 [svn-r26247] Reverted back from using 'USE MPI' to include 'mpif.h' since windows does not seem to support 'USE MPI'. 2015-02-20 08:59:18 -05:00
Dana Robinson
5867b6db9e [svn-r26246] Corrects a regular expression in the bin/trace Perl script that did not 
match API calls which return a pointer.

Fixes: HDFFV-9141

Tested on: h5committest
 2015-02-20 08:04:19 -05:00
Scot Breitenfeld
3eeed2f1d5 [svn-r26241] Fixed issue with default 8 byte integers using xlf compilers. 2015-02-19 11:17:16 -05:00