16752 Commits

Author SHA1 Message Date
M. Scot Breitenfeld
57ab1e7d69 add linking flag to cmake, does not fix the issue, still disabled shared with fortran 2017-05-23 17:14:21 -05:00
Frank Willmore
364fe58fea cleanup 2017-05-23 10:20:37 -07:00
Frank Willmore
8f25e21e10 enabled MPI error handling 2017-05-23 10:14:35 -07:00
M. Scot Breitenfeld
69ccaee00a add documention comments for shared Fortran Fix on OSX 2017-05-23 09:53:59 -05:00
M. Scot Breitenfeld
6301d5a6cb Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 16:03:56 -05:00
M. Scot Breitenfeld
97ac37592b Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-22 15:45:17 -05:00
Allen Byrne
0f81f23d69 HDFFV-8611 add autotools test 2017-05-22 13:55:15 -05:00
Allen Byrne
60cfdf138c Remove obsolete function 2017-05-22 13:24:53 -05:00
Allen Byrne
cdcef539a3 HDFFV-8611 change h5repack to save the root group creation order
Added test and new arguments to control the the input file parsing.
2017-05-22 13:10:40 -05:00
Dana Robinson
f36174b750 Merge branch 'develop' into compat_feature_flag 2017-05-19 19:18:09 -04:00
Dana Robinson
14c286d51a Fixed HDFFV-10214:
* Updated comments in the library to accurately reflect the semantics
  of the H5FD_FEAT_POSIX_COMPAT_HANDLE flag.
* Removed the check for the POSIX compatible handle feature flag
  when determining if a VFD supports SWMR.
Partial work for HDFFV-10197:
* Added a new H5FD_FEAT_DEFAULT_VFD_COMPATIBLE feature flag that is
  set when a VFD creates output that is compatible with the default
  VFD. Will be used in the testing but might also be generally useful
  to users.
2017-05-19 14:58:34 -07:00
Allen Byrne
8861b5a494 Merge pull request #527 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '973aebe25f87b84ff6dd3d9eca51b76643090564':
  Add  debug trace commands
  HDFFV-9055 Correct file generator
  Added note about 9055 and 10128, 9995 not needed
2017-05-19 13:39:46 -05:00
Allen Byrne
973aebe25f Add debug trace commands 2017-05-19 11:35:07 -05:00
M. Scot Breitenfeld
2b2a1d605e Fix for shared fortran libraries on mac (HDFFV-2772). 2017-05-18 16:32:26 -05:00
Allen Byrne
e60bf13c76 HDFFV-9055 Correct file generator 2017-05-18 16:29:52 -05:00
Allen Byrne
9b8ffee145 Added note about 9055 and 10128, 9995 not needed 2017-05-18 09:12:47 -05:00
Allen Byrne
13bedd4c4a Merge pull request #521 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'fcc56184f1699fc1d35b042acb1388cc76b8ea16':
  Whitespace
  Move execeutable command after declaration
  HDFFV-9055 add test files
  HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates
2017-05-17 15:11:14 -05:00
Allen Byrne
fcc56184f1 Whitespace 2017-05-17 15:09:13 -05:00
Allen Byrne
71c223c082 Move execeutable command after declaration 2017-05-17 13:09:13 -05:00
Allen Byrne
23d9fe2649 HDFFV-9055 add test files 2017-05-17 10:06:17 -05:00
Allen Byrne
3ee87f72ad HDFFV-9055 Handle H5T_ARRAY types
Create variables just for diff_array function
Whitespace updates
2017-05-16 15:58:17 -05:00
Allen Byrne
858155c19b Merge pull request #519 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '71637634ac96b6167b384ebb461ce3b9ea66b4f8':
  HDFFV-9995 Clarify help text
  HDFFV-10128 Fixed string length with no null fixed
2017-05-16 14:54:53 -05:00
Allen Byrne
71637634ac HDFFV-9995 Clarify help text 2017-05-16 10:16:44 -05:00
Allen Byrne
4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Dana Robinson
2e6d95a1a1 Updated the gnu-flags config file to remove gcc 3.x and 4.0 configurations
as well as other minor rework and cleanup.
2017-05-16 00:27:30 -04:00
Larry Knox
3e1a06e649 Merge pull request #516 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '56c3ec98207bb6c4b3e6a7b9523c2a1e849879c3':
  HDFFV-10128 add test to check null term Test is another dataset
  HDFFV-10128 Fix null term strings
2017-05-15 17:12:57 -05:00
Vailin Choi
8e8a30bdd4 Merge pull request #515 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '54dff331778a660824961fdf6359e4eae998a13c':
  Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 13:31:47 -05:00
Allen Byrne
56c3ec9820 HDFFV-10128 add test to check null term
Test is another dataset
2017-05-15 12:33:58 -05:00
Vailin Choi
54dff33177 Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934)
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
2017-05-15 10:25:15 -05:00
Allen Byrne
7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Dana Robinson
5e60a0e10e Merge pull request #512 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop
* commit 'f95ef72a5e9827dfa63e4722938a58a8c9d686c0':
  Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch.
2017-05-11 23:26:06 -05:00
Dana Robinson
f95ef72a5e Merged HDFFV-10187 direct chunk overwrite bugfix to develop from 1.10 branch. 2017-05-11 23:31:57 -04:00
Allen Byrne
a23da99bdb Merge pull request #506 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '0cb8152b8e97d659e076b42340509c41b3919754':
  HDFFV-10186 Need to pull the flag into the script
2017-05-11 09:12:11 -05:00
Allen Byrne
0cb8152b8e HDFFV-10186 Need to pull the flag into the script 2017-05-11 09:03:21 -05:00
Allen Byrne
fcdf2ace7d Merge pull request #503 in HDFFV/hdf5 from ~BYRN/hdf5_adb:bugfix/HDFFV-10186-tbitnopaque-test to develop
* commit 'ec0935a924a84b18b29473b4fcec7c3f4e1aca76':
  HDFFV-10186 xml test also needs endianess aware files
  HDFFV-10186 - h5tools_str_append is not printf
  HDFFV-10186 braces formatting
  Fix reference file contents
  HDFFV-10186 Add endianess to bitfield and fix tests
2017-05-10 16:38:36 -05:00
Larry Knox
46937e9032 Merge pull request #505 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit 'c8a5520d3aa3a526460c81507f2f985dc534b14f':
  Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
2017-05-10 16:10:41 -05:00
lrknox
c8a5520d3a Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-10 14:44:58 -05:00
Allen Byrne
ec0935a924 HDFFV-10186 xml test also needs endianess aware files 2017-05-10 12:45:06 -05:00
Allen Byrne
7dc0c79c54 HDFFV-10186 - h5tools_str_append is not printf 2017-05-10 12:20:15 -05:00
Allen Byrne
dd45c3694f HDFFV-10186 braces formatting 2017-05-10 11:09:55 -05:00
Allen Byrne
772e6e9a7f Fix reference file contents 2017-05-10 11:00:37 -05:00
Allen Byrne
445c805a4c HDFFV-10186 Add endianess to bitfield and fix tests 2017-05-10 10:59:13 -05:00
Allen Byrne
9d50ed5287 Merge pull request #501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'e4e261173f85de6f83651abd6950793d7b930a20':
  HDFFV-10186 more whitespace formatting
2017-05-10 10:46:37 -05:00
Allen Byrne
e4e261173f HDFFV-10186 more whitespace formatting 2017-05-10 10:12:19 -05:00
Allen Byrne
900a110c89 Merge pull request #497 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4f36f613a6de09d8ec197b7e5a4a72dbdb9417a2':
  HDFFV-10186 Whitespace change Mostly tabs to spaces Remove Modifications comments
2017-05-10 08:48:46 -05:00
Vailin Choi
dc0276a81c Merge pull request #498 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '8482314d7db83c47947af8ca50457cdb1ddae366':
  Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
2017-05-09 17:34:15 -05:00
Vailin Choi
8482314d7d Fix for HDFFV-10051
Fix missing declaration for H5D__layout_compact_dirty_test().
Tested on mayll and osx1010test.
2017-05-09 17:30:20 -05:00
Allen Byrne
4f36f613a6 HDFFV-10186 Whitespace change
Mostly tabs to spaces
Remove Modifications comments
2017-05-09 16:52:05 -05:00
Vailin Choi
e062a77e0e Merge pull request #494 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'd436db6c6efdfe7e9dbe06a642715116ef0eb5e3':
  Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
  Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-09 13:18:26 -05:00
Allen Byrne
850a5956c0 Merge pull request #496 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '5263bc9029dcf06779a0ec2b89688912443a4bfa':
  HDFFV-10186 Whitespace changes Mostly replacing tabs with spaces Removed empty mod sections
2017-05-09 12:41:38 -05:00