Commit Graph

2947 Commits

Author SHA1 Message Date
Allen Byrne
a1a1840d6e Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '6d353f8ccc908d494a4ea8e1a56c9fb8e973e908':
  Snapshot version 1.10 release 2 (snap2)
  Merge pull request #703 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
2017-10-19 12:32:15 -05:00
Larry Knox
a6fdf1bb0e Merge pull request #703 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '4a3998ac308c2bf24201e470c0b23f7f83f063e1':
  Correct indentation in h5diff/Makefile.am.
  Add "-rpath /nowhere" to *_la_LDFLAGS for plugin test libraries. This allows them to be successfully linked but not installed.  The change was added for the HDF5 1.8.20 release, but is also needed for all other HDF5 branches.
2017-10-16 15:45:14 -05:00
Allen Byrne
6029b679a3 Fix test step 2017-10-11 10:25:01 -05:00
Allen Byrne
f92ccce1f9 HDFFV-10297 merge from develop 2017-10-10 14:46:59 -05:00
Vailin Choi
b9f294a944 Modifications based on comments from pull request review
(1) Remove unnecessary asserts
(2) Add code to insert bad offset values to the test file in gen_bad_offset.c
2017-08-30 10:27:03 -05:00
Vailin Choi
f6c94f3ba6 Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file
Fix H5HL_offset_into() to return error when offset exceeds heap data block size.
Also fix other places that call this routine to detect error return.
2017-08-30 10:26:19 -05:00
Vailin Choi
d4e75f6a50 Skip test in test/fheap.c when:
a) multi/split drivers and
b) persisting free-space or using paged aggregation strategy
because the library will fail file creation (temporary) for the above conditions.
2017-08-02 17:04:15 -05:00
Vailin Choi
d7bfd458c4 Changes made based on RFC review comments
Test the changes in a branch via daily testing.
2017-08-02 17:00:13 -05:00
Vailin Choi
8eaef34ef0 Merge pull request #608 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to hdf5_1_10
* commit 'fc76c7785251482a26f31efabb10d38725facb6a':
  Fix for HDFFV-10217 infinite loop in H5VM_power2up(). The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
2017-07-27 17:38:18 -05:00
Allen Byrne
fab0a6e6f1 Add check for plugin initialize 2017-07-26 10:48:15 -05:00
Vailin Choi
fc76c77852 Fix for HDFFV-10217 infinite loop in H5VM_power2up().
The function H5VM_power2up() returns the next power of 2 for n.
When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping.
The fix ensures that the function checks for n >= 2^63 and returns 0.
2017-07-19 18:03:18 -05:00
Vailin Choi
201af70c24 Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers
Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-07-18 01:21:54 -05:00
Dana Robinson
63647cd363 Merge of recent develop work to 1.10 branch.
Fixes for:
* HDFFV-10247 (autotools Fortran long double bug)
* HDFFV-10248 (autotools deprecated debug/production tweak)
* HDFFV-10250 (-fno-omit-frame-pointer w/ symbols)
* Disabled missing parameter warnings in Java constant code
* Added H5I_VFL ID checks to tmisc.c
* Added 'get a dummy VFD' call to h5test library
2017-07-05 11:35:03 -07:00
Dana Robinson
fb5c13d59c Merge of recent develop work to 1.10 branch:
* H5FD_FEAT_DEFAULT_VFD_COMPATIBLE VFD feature flag (HDFFV-10214)
* H5FDdriver_query() API call (HDFFV-10215)
* Fix to skip SWMR tests that when the current VFD is not compatible
  with the default VFD (HDFFV-10197)
* Removed obsolete compiler versions from config/gnu-flags (HDFFV-9937)
* Many warning fixes
2017-05-31 17:45:41 -04:00
lrknox
228939e731 Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -
changed to H5Dopen2 to fix failure with --with-default-api-version=v16
configure option.
2017-05-11 12:11:20 -05:00
Vailin Choi
10a3bbe680 Fix for the two issues reported in HDFFV-10051
Modifications made based on the review comments from pull request #494
Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-10 01:04:03 -05:00
Vailin Choi
f1c9163c91 Fix for the two issues reported in HDFFV-10051:
(1) Repeated open/close of a compact dataset fails due to the
increment of ndims in the dataset structure for every open.
--This is done only for chunked dataset via H5D__chunk_set_sizes().
(2) layout "dirty" flag for a compact dataset is not reset
properly after flushing the data at dataset close.
--Reset the "dirty" flag before flushing the message to the object header
via H5O_msg_write().
Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
2017-05-10 01:03:23 -05:00
Allen Byrne
b3fb91a932 HDFFV-10173 revert and add dynlib flags 2017-04-25 15:46:03 -05:00
Allen Byrne
2599c23164 Change signature of H5PLget_size 2017-04-25 09:40:54 -05:00
Dana Robinson
cbab16c8f2 The cache_image test shows a skipped message about EoC in parallel. 2017-04-20 16:59:05 -04:00
Dana Robinson
2b936c79e2 Added code to disable the evict-on-close feature in
the parallel library.
2017-04-20 16:58:34 -04:00
Allen Byrne
0bab6fb76c HDFFV-10170 undo patch 2017-04-18 14:13:56 -05:00
Allen Byrne
d5da45e168 Add plugin options for libs 2017-04-18 14:13:22 -05:00
Larry Knox
dcd18f8684 Merge pull request #431 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'b67e626ba9095f35dd9a8f9e8ca906320f85914c':
  HDFFV-10173 remove hook for noinst libs
  HDFFV-10170 fix noinst for test libs
  HDFFV-10173 fix compile on VS2008
  Due to HDFVIEW-19 add read VL as string function
2017-04-17 16:28:25 -05:00
Allen Byrne
b67e626ba9 HDFFV-10173 remove hook for noinst libs 2017-04-17 16:25:34 -05:00
Allen Byrne
a447dd64cc HDFFV-10170 fix noinst for test libs 2017-04-17 13:58:14 -05:00
lrknox
49cded79ce Add new files in release_docs to MANIFEST.
Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running
autogen.sh.

Conflicts:
	README.txt
	c++/src/Makefile.in
	fortran/src/Makefile.in
	hl/c++/src/Makefile.in
	hl/fortran/src/Makefile.in
	hl/src/Makefile.in
	java/src/jni/Makefile.in
	release_docs/RELEASE.txt
	src/Makefile.in
2017-04-15 08:17:10 -05:00
lrknox
b9a27fddaa Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
* commit '0d05cb607e5951f3a28a101be56ca194022a7fa1':
  Reverted addition of The HDF Group copyright headers to 3rd party CMake files for Java.
  Add Copyright headers to 90 files (mostly .cmake files) without Copyright headers.
  Add "Copyright by The HDF Group."" to copyright header.
2017-04-14 16:40:52 -05:00
lrknox
25ec07450a Change copyright headers to replace url referring to file to be removed
and replace it with new url for COPYING file.

Fix 2 lines in java error test expected output file where messages
include line numbers changed by reducing the copyright header by 2
lines.
2017-04-14 11:54:16 -05:00
Vailin Choi
3d1b227a67 Skip tests for page buffering in test/fheap.c for parallel build
Skip the two tests for page buffering in test/fheap.c because this feature is disabled in parallel.
Activate full testing when this feature is re-enabled in the future for parallel build.
2017-04-13 02:47:23 -05:00
Vailin Choi
7eda1e3c6a Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2821b8bd768138db6b5f917a5b7325f878f8f7d0':
  Fix URL name
  DAILYTEST-250 change test props to reduce timeout
2017-04-11 18:09:03 -05:00
Allen Byrne
a79ab2d39e DAILYTEST-250 change test props to reduce timeout 2017-04-11 12:57:19 -05:00
Vailin Choi
9742792f8c Fix for H5Dset_extent test failure with extensive array indexing (HDFFV-9771)
1) Calculate chunk index for extensive array index based on swizzled max chunks when unlim_dim > 0
2) Minor fixes to test/fheap.c that somehow were missed from last check in.  See pull request #396 review comments.
2017-04-11 11:59:27 -05:00
Vailin Choi
b3ff39585c Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '4a05d27c6fcef81612e005b6f6429ab362247492':
  HDFFV-10143 add missing javadoc param
  Add missing test status
  Fix CMake regex commands
2017-04-06 21:32:23 -05:00
Allen Byrne
177a8ba30e Add missing test status 2017-04-06 14:29:47 -05:00
Vailin Choi
ad2963de60 Modify test/fheap.c to run with various file space strategies and/or page buffering
Modify test/fheap.c to run with different combinations of file space strategies and page buffering
only when ExpressMode is 0 (HDF5TestExpress is 0).
Tested on ostrich, platypus, mayll, emu, osx1010test, quail, kite, kituo.
2017-04-05 15:43:00 -05:00
Allen Byrne
857f515325 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '60bb3fd1108e2006a79b008d031a0f68a1e6b393':
  Re-enabled fixed array index testing in the test_random_rank4_vl() test in test/set_extent. This was fixed some time ago, but the test was never re-enabled for that index type.
2017-04-05 09:41:32 -05:00
Dana Robinson
f060e05999 Re-enabled fixed array index testing in the test_random_rank4_vl() test
in test/set_extent. This was fixed some time ago, but the test was
never re-enabled for that index type.
2017-04-04 20:20:12 -04:00
Allen Byrne
c2941faa66 Fix typo deletion 2017-04-04 10:15:56 -05:00
Allen Byrne
cbdc1250ce HDFFV-10143 clean up format and function return 2017-04-04 09:53:42 -05:00
Allen Byrne
1f88a34fa7 Update with checks for index bounds 2017-04-03 12:34:17 -05:00
Allen Byrne
87e8da6600 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2412158ed8326a3f3d62fbd947e470667d0b5951':
  Add new file COPYING_LBNL_HDF5.
  Revert "Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries"
  Add LBNL license file and modify COPYING file accordingly.
  Omnibus checkin for several relatively minor modifications:
  Clear hdf5 1.10 entries from RELEASE.txt in the develop branch.  Entries in this branch version of RELEASE.txt should be intended for the future 1.12.0 release.
  Fix HDFFV-8089 Description:     Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated     data structure but not caught because the case of H5D_CHUNK_DEBUG being     defined was never tested.  It was commented out.     I defined H5D_CHUNK_DEBUG, tested, and commented out again. Platforms tested:     Linux/32 2.6 (jam)     Linux/64 (platypus)     Darwin (osx1010test)
2017-04-03 09:23:27 -05:00
Allen Byrne
1eb4693aa8 HDFFV-10143 surround will fail with try block 2017-03-30 17:11:50 -05:00
Allen Byrne
8e66383393 HDFFV-10143 typo cleanup 2017-03-30 17:03:08 -05:00
Allen Byrne
e40a33f74d HDFFV-10143 typo removed 2017-03-30 16:55:33 -05:00
Allen Byrne
b46aa5aff7 Fix code error and use H5PL_MAX_PATH_NUM in test 2017-03-30 16:48:10 -05:00
Allen Byrne
51412aa48c HDFFV-10143 Cleanup due to comments 2017-03-30 15:03:31 -05:00
Allen Byrne
e51c624ac0 HDFFV-10143 remove debugging output 2017-03-30 14:47:38 -05:00
Allen Byrne
d29548351f HDFFV-10143 change h5PLget to use buffer like H5Iget_name 2017-03-30 14:40:03 -05:00
Allen Byrne
af4d79cbb6 HDFFV-10143 change put to replace and add const 2017-03-30 13:22:43 -05:00