Fix for HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree
Description:
This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement."
From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir.
It's addressed by skipping if cp's src dir and dest dir is same.
Also this applied for all other tools under src/tools dir.
No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools
Stage2 working for h5copy tool.
Description:
Update cmake script to fetch test files from anywhere.
Also keep the apperance similiar to shell script for better maintainance.
some updated shell script.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE), Cmake (jam)
Purpose:
Work for HDFFV-7602 - HDF5 command tools: Provide framework for reusable
test files among tools
Description:
Provide framework to share test files among tools for tools test.
Tested:
jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
Test scripts sometimes need to filter some system-specific messages from the
actual output so that it can match the correct expected output. These filtering
functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being
repeated in individual test scripts. This becomes a maintenance problem and
is error prone.
Solution:
Extract the two filter functions code to bin/output_filter.sh and then each
test script sources it in. This allows reuse of coding and is much easier to
maintain and to add new filtering.
Tested:
LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial
mode only.
--This line, and those below, will be ignored--
M tools/misc/testh5mkgrp.sh
M tools/h5dump/testh5dump.sh.in
M tools/h5diff/testh5diff.sh
M tools/h5copy/testh5copy.sh
M tools/h5ls/testh5ls.sh.in
M MANIFEST
A bin/output_filter.sh
h5ls is used to verify for the result, so change the two tests not to run
h5diff like others.
This is related to the previous checkin SVN r18398 for Bug#1733.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
Fix Bug 2120 - h5copy: improve to copy an object into same HDF file
Description:
Before the fix users can't copy an object (dataset or group) with
different name if input file (-i) and output file (-o) is same.
This feature would be useful to clone any object with different name and
reuse contents.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.
Description:
Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed.
Tested:
jam, amani, heiwa
Backout the previous changes (r19598):
(Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.)
Description:
Some failure occurred on talwit, so backout the changes and will put it back
after the fix.
(Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed.
Merged from hdf5 trunk r19598.)
Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.
Description:
Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. Expected to be failed.
Tested:
jam, amani, heiwa
Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object
Description:
Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly.
Tested:
jam, amani, heiwa
Problem: some launching command like yod (and sometimes mpirun), do not pass
back the exit code of the executables back to the shell. It always returns 0
if it can launch the executable. This cause tests that expect non-zero exit
code to fail incorrectly.
Short term Solution:
Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not
test conditions that rely on non-zero exit code.
Tests:
dove-linux using RUNSERIAL=thgyod to see the failures and using
$RUNSERIAL_NOEXITCODE=yes to bypass the errors.
Also h5committested.
Bug1727 - h5copy: add test cases for object and region references
File added:
tools/h5copy/testfiles/h5copy_ref.out.ls
tools/h5copy/testfiles/h5copy_ref.h5
Tested:
jam, linew
Mask off the storage utilization for the h5ls output, so that the
h5ls output is more portable (VL datatype size is reported as the memory size
instead of the file size, making the storage utilization incorrect - entered
in bugzilla)
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Blank out the modification time, to eliminate another portability issue.
Tested on:
Linux/32 2.6 (chicago)
FreeBSD/32 6.2 (duty)
Mac OS X/32 10.4.8 (amazon)
Add '-p' flag to h5copy tool, to create intermediate "parent" groups
that don't exist in destination file yet.
Add more tests to h5copy script.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Put paths to testfile input & output directories in one place, making it
easier to modify them if we choose to re-arrange our testfile locations in
the future (this should probably be carried over to other test scripts).
Make h5copy exit more cleanly if no command line parameters are given.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Add small 'h5mkgrp' tool to create groups in an HDF5 file from the command
line, allowing the group structure for a file to be created in a script. This
tool closely follows the 'mkdir' command line tool in UNIX/Linux.
Allow tool library applications to pass a FAPL to the h5tool_fopen() call,
giving some additional flexibility to tools which are adding objects to an
existing HDF5 file (like h5copy & h5mkgrp).
Fix missing files in MANIFEST from previous checkin(s).
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Add empty & "full" groups to source HDF5 file and test copying them.
Test renaming objects during copy
Test specifying root group path for source & destination objects
Tested on:
Linux/32 2.6 (chicago)
Too minor to require more tests
Refactor h5copy testing script to abstract out some of the common behavior,
obey the "HDF5_NOCLEANUP" environment variable, delete any output file left
over from a previous run, add a "test variation" parameter to output file name
for adding next sequence of test variations, etc.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
Add feature to h5copy to allow it to add an object to an existing file,
instead of blowing away existing file.
Modify h5tools_fopen() routine to take access flags, so it can be used
to open an existing file for writing.
Added check to h5copy test script that verifies it has produced a file
with the correct structure.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
the $srcdir properly. It is not right to chdir into testfiles and write
files there because in real srcdir mode, one should not changes things
in the srcdir area which could be shared by multiple builds simultanteously.
Solution: added the proper $srcdir components to the source file name.
Also clean up the indentation by cb.
Tested: only by hand in heping.
bug fix
calling h5tools_get_fapl running the mpio driver caused H5FD_pl_copy to
fail silently in some conditions. a MPI call was made before MPI_Init.
solution: corrected the MPI call to be made after MPI_Init and added error return
conditions to H5FD_pl_copy and h5tools_get_fapl
tested on copper parallel, mir, shanti
it uses the API function H5Gcopy to copy groups and datasets from file
to file, read from a command line
note: the test script is not finished yet
tested on heping, copper, shanti
